Wall clock time and date at job start Fri Apr 10 2020 23:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47234 * 239.99454 * 2 1 3 5 5 C 1.50707 * 109.47256 * 119.99792 * 2 1 3 6 6 O 1.21285 * 119.99582 * 353.34788 * 5 2 1 7 7 N 1.34766 * 120.00354 * 173.34995 * 5 2 1 8 8 C 1.47605 * 122.43022 * 354.68252 * 7 5 2 9 9 S 1.84072 * 102.63811 * 155.21293 * 8 7 5 10 10 C 1.84215 * 93.91059 * 33.44076 * 9 8 7 11 11 C 1.45502 * 122.43436 * 174.71091 * 7 5 2 12 12 H 1.09006 * 108.75222 * 302.02424 * 11 7 5 13 13 C 1.50700 * 108.75449 * 60.08304 * 11 7 5 14 14 O 1.21282 * 119.99894 * 0.02562 * 13 11 7 15 15 N 1.34775 * 120.00144 * 180.02562 * 13 11 7 16 16 C 1.46504 * 120.00089 * 179.97438 * 15 13 11 17 17 C 1.52997 * 109.47249 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47304 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99578 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00074 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99919 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00005 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47060 * 90.00352 * 22 20 18 24 24 H 1.48501 * 109.47154 * 210.00355 * 22 20 18 25 25 H 1.48502 * 109.47245 * 330.00423 * 22 20 18 26 26 H 1.09002 * 109.46916 * 300.00333 * 1 2 3 27 27 H 1.08998 * 109.46670 * 60.00493 * 1 2 3 28 28 H 1.08996 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46923 * 171.74877 * 3 2 1 30 30 H 1.09006 * 109.46547 * 291.74088 * 3 2 1 31 31 H 1.08997 * 109.47581 * 51.74497 * 3 2 1 32 32 H 1.08996 * 109.47376 * 300.00076 * 4 2 1 33 33 H 1.09004 * 109.46837 * 60.00533 * 4 2 1 34 34 H 1.08997 * 109.46928 * 180.02562 * 4 2 1 35 35 H 1.09005 * 110.78142 * 273.50318 * 8 7 5 36 36 H 1.09005 * 110.77479 * 36.92665 * 8 7 5 37 37 H 1.09003 * 111.04970 * 209.73049 * 10 9 8 38 38 H 1.08993 * 111.08648 * 85.76769 * 10 9 8 39 39 H 0.96997 * 119.99711 * 359.97438 * 15 13 11 40 40 H 1.09000 * 109.46830 * 299.99556 * 16 15 13 41 41 H 1.09006 * 109.46922 * 59.99240 * 16 15 13 42 42 H 1.09003 * 109.46879 * 300.00429 * 17 16 15 43 43 H 1.09002 * 109.47188 * 59.99571 * 17 16 15 44 44 H 0.97000 * 119.99872 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2509 -1.0647 2.0877 7 7 3.3499 -0.9519 1.3785 8 6 4.3340 -0.6484 0.3211 9 16 5.8950 -0.4346 1.2729 10 6 5.4420 -1.6916 2.5411 11 6 3.9056 -1.5312 2.5921 12 1 3.6479 -0.8911 3.4359 13 6 3.2841 -2.8866 2.8106 14 8 2.4636 -3.3112 2.0249 15 7 3.6399 -3.6268 3.8792 16 6 3.0352 -4.9442 4.0919 17 6 3.6088 -5.5690 5.3653 18 6 2.9872 -6.9243 5.5838 19 1 2.2566 -7.3024 4.8841 20 6 3.3514 -7.6816 6.6769 21 7 2.8093 -8.8646 6.8672 22 14 4.6157 -7.0279 7.8866 23 1 3.9271 -6.2638 8.9577 24 1 5.3586 -8.1642 8.4886 25 1 5.5665 -6.1361 7.1754 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1200 1.4460 0.1475 30 1 1.8022 1.9119 -0.9547 31 1 1.5613 1.9972 0.8069 32 1 1.6767 -1.7490 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 4.4186 -1.4799 -0.3787 36 1 4.0699 0.2717 -0.2003 37 1 5.8926 -1.4552 3.5050 38 1 5.7205 -2.6941 2.2165 39 1 4.2964 -3.2873 4.5074 40 1 1.9555 -4.8360 4.1944 41 1 3.2568 -5.5874 3.2402 42 1 4.6885 -5.6771 5.2624 43 1 3.3876 -4.9258 6.2171 44 1 3.0652 -9.3972 7.6365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330864578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:12 Heat of formation + Delta-G solvation = -57.337531 kcal Electronic energy + Delta-G solvation = -25006.981139 eV Core-core repulsion = 21472.216074 eV Total energy + Delta-G solvation = -3534.765065 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05177 -39.14728 -36.37579 -36.00233 -34.96113 -32.93596 -31.73819 -29.86510 -28.16112 -27.72049 -27.12794 -25.47085 -24.49206 -22.25470 -20.84738 -20.28461 -19.24394 -17.63327 -17.52561 -16.87552 -16.76094 -15.69709 -15.38069 -15.29815 -14.94183 -14.84183 -14.44829 -14.21262 -14.10000 -14.01912 -13.37358 -13.24611 -12.93606 -12.78846 -12.60935 -12.54666 -12.39894 -12.18911 -12.00471 -11.95870 -11.51010 -11.31132 -11.24696 -11.18827 -10.87952 -10.41292 -10.27461 -9.98748 -9.84430 -9.62507 -9.35473 -8.91056 -8.66028 -8.55764 -8.29561 -6.12144 -4.12445 1.18268 1.53694 2.29698 2.56775 2.80184 3.24189 3.31210 3.32486 3.49825 3.86065 4.15200 4.36317 4.38257 4.46685 4.48800 4.57947 4.73992 4.84572 4.94520 5.00505 5.15580 5.20625 5.22665 5.27744 5.35713 5.48347 5.60712 5.62544 5.70443 5.85323 5.91866 6.07971 6.11109 6.18731 6.53867 6.69718 6.95589 7.10673 7.20950 7.64918 7.80385 8.00774 8.41691 8.50511 8.92270 9.47705 11.00980 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019867 B = 0.003288 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.065738 B = 8513.918088 C = 9462.059635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 C -0.147 4.147 4 C -0.160 4.160 5 C 0.543 3.457 6 O -0.502 6.502 7 N -0.601 5.601 8 C 0.146 3.854 9 S -0.268 6.268 10 C -0.065 4.065 11 C 0.114 3.886 12 H 0.111 0.889 13 C 0.501 3.499 14 O -0.517 6.517 15 N -0.724 5.724 16 C 0.133 3.867 17 C -0.021 4.021 18 C -0.523 4.523 19 H 0.075 0.925 20 C 0.069 3.931 21 N -0.898 5.898 22 Si 0.883 3.117 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.266 1.266 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.110 0.890 39 H 0.394 0.606 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.022 0.978 43 H 0.018 0.982 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 23.316 -15.329 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.084 4.084 3 C -0.204 4.204 4 C -0.218 4.218 5 C 0.329 3.671 6 O -0.373 6.373 7 N -0.338 5.338 8 C -0.087 4.087 9 S -0.042 6.042 10 C -0.214 4.214 11 C 0.005 3.995 12 H 0.129 0.871 13 C 0.282 3.718 14 O -0.392 6.392 15 N -0.375 5.375 16 C 0.011 3.989 17 C -0.059 4.059 18 C -0.562 4.562 19 H 0.093 0.907 20 C -0.133 4.133 21 N -0.536 5.536 22 Si 0.710 3.290 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.128 0.872 39 H 0.227 0.773 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.036 0.964 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.118 23.365 -15.467 28.484 hybrid contribution 0.123 -0.484 1.246 1.343 sum 5.242 22.881 -14.221 27.446 Atomic orbital electron populations 1.21667 0.91440 1.03255 1.02090 1.20761 0.98383 0.96029 0.93221 1.22025 1.01266 0.93789 1.03317 1.22312 1.02040 1.01453 0.95972 1.20403 0.79910 0.78358 0.88386 1.90758 1.53659 1.49385 1.43540 1.48087 1.07125 1.63937 1.14617 1.24922 0.86339 1.05409 0.91990 1.88377 1.28018 1.54520 1.33243 1.24543 0.93464 1.01425 1.01979 1.21211 0.92766 0.95181 0.90344 0.87148 1.20475 0.82967 0.86047 0.82288 1.90706 1.32199 1.71373 1.44914 1.46253 1.44836 1.20307 1.26133 1.21508 0.97651 0.80160 0.99604 1.19789 0.96780 0.97047 0.92257 1.20911 1.25173 0.99476 1.10592 0.90656 1.25003 0.96065 0.94660 0.97557 1.69905 1.43263 1.11100 1.29382 0.86745 0.82021 0.78719 0.81539 1.20202 1.21260 1.19088 0.91741 0.91894 0.91672 0.91827 0.90974 0.91607 0.91410 0.91137 0.91184 0.88170 0.85335 0.85056 0.87177 0.77251 0.91924 0.92011 0.96014 0.96414 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 7.78 37.16 0.29 -0.96 16 2 C -0.08 -0.76 0.75 -155.65 -0.12 -0.88 16 3 C -0.15 -0.99 8.23 37.16 0.31 -0.68 16 4 C -0.16 -1.24 8.07 37.16 0.30 -0.94 16 5 C 0.54 7.34 5.64 -10.99 -0.06 7.28 16 6 O -0.50 -9.11 14.35 -15.48 -0.22 -9.33 16 7 N -0.60 -7.01 2.76 -169.15 -0.47 -7.48 16 8 C 0.15 1.23 5.24 60.45 0.32 1.55 16 9 S -0.27 -2.38 23.43 -107.50 -2.52 -4.90 16 10 C -0.07 -0.58 6.68 37.97 0.25 -0.33 16 11 C 0.11 1.37 2.91 -68.80 -0.20 1.17 16 12 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 13 C 0.50 8.24 6.43 -10.99 -0.07 8.17 16 14 O -0.52 -10.72 14.42 -15.48 -0.22 -10.94 16 15 N -0.72 -11.74 5.42 -60.29 -0.33 -12.06 16 16 C 0.13 2.74 5.61 -4.04 -0.02 2.71 16 17 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 18 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 19 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 22 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 26 H 0.06 0.69 8.03 -51.93 -0.42 0.27 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.39 5.31 -51.93 -0.28 0.11 16 30 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.45 3.78 -51.93 -0.20 0.26 16 35 H 0.10 0.80 7.24 -51.93 -0.38 0.43 16 36 H 0.13 0.81 3.98 -51.93 -0.21 0.60 16 37 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.11 1.02 7.85 -51.93 -0.41 0.62 16 39 H 0.39 5.11 8.23 -40.82 -0.34 4.77 16 40 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 43 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -35.77 356.07 -8.64 -44.41 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.79 Total: 1.98 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 0.45 Total: 3.32 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.02 Total: -46.22 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.45 Total: -20.28 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 16 Polarization: -2.38 SS G_CDS: -2.52 Total: -4.90 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.77 -8.64 -44.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330864578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.932 kcal (2) G-P(sol) polarization free energy of solvation -35.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds