Wall clock time and date at job start Fri Apr 10 2020 23:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47234 * 239.99454 * 2 1 3 5 5 C 1.50707 * 109.47256 * 119.99792 * 2 1 3 6 6 O 1.21285 * 119.99582 * 353.34788 * 5 2 1 7 7 N 1.34766 * 120.00354 * 173.34995 * 5 2 1 8 8 C 1.47605 * 122.43022 * 354.68252 * 7 5 2 9 9 S 1.84072 * 102.63811 * 155.21293 * 8 7 5 10 10 C 1.84215 * 93.91059 * 33.44076 * 9 8 7 11 11 C 1.45502 * 122.43436 * 174.71091 * 7 5 2 12 12 H 1.09006 * 108.75222 * 302.02424 * 11 7 5 13 13 C 1.50700 * 108.75449 * 60.08304 * 11 7 5 14 14 O 1.21282 * 119.99894 * 0.02562 * 13 11 7 15 15 N 1.34775 * 120.00144 * 180.02562 * 13 11 7 16 16 C 1.46504 * 120.00089 * 179.97438 * 15 13 11 17 17 C 1.52997 * 109.47249 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47304 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99578 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00074 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99919 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00005 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47060 * 90.00352 * 22 20 18 24 24 H 1.48501 * 109.47154 * 210.00355 * 22 20 18 25 25 H 1.48502 * 109.47245 * 330.00423 * 22 20 18 26 26 H 1.09002 * 109.46916 * 300.00333 * 1 2 3 27 27 H 1.08998 * 109.46670 * 60.00493 * 1 2 3 28 28 H 1.08996 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46923 * 171.74877 * 3 2 1 30 30 H 1.09006 * 109.46547 * 291.74088 * 3 2 1 31 31 H 1.08997 * 109.47581 * 51.74497 * 3 2 1 32 32 H 1.08996 * 109.47376 * 300.00076 * 4 2 1 33 33 H 1.09004 * 109.46837 * 60.00533 * 4 2 1 34 34 H 1.08997 * 109.46928 * 180.02562 * 4 2 1 35 35 H 1.09005 * 110.78142 * 273.50318 * 8 7 5 36 36 H 1.09005 * 110.77479 * 36.92665 * 8 7 5 37 37 H 1.09003 * 111.04970 * 209.73049 * 10 9 8 38 38 H 1.08993 * 111.08648 * 85.76769 * 10 9 8 39 39 H 0.96997 * 119.99711 * 359.97438 * 15 13 11 40 40 H 1.09000 * 109.46830 * 299.99556 * 16 15 13 41 41 H 1.09006 * 109.46922 * 59.99240 * 16 15 13 42 42 H 1.09003 * 109.46879 * 300.00429 * 17 16 15 43 43 H 1.09002 * 109.47188 * 59.99571 * 17 16 15 44 44 H 0.97000 * 119.99872 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2509 -1.0647 2.0877 7 7 3.3499 -0.9519 1.3785 8 6 4.3340 -0.6484 0.3211 9 16 5.8950 -0.4346 1.2729 10 6 5.4420 -1.6916 2.5411 11 6 3.9056 -1.5312 2.5921 12 1 3.6479 -0.8911 3.4359 13 6 3.2841 -2.8866 2.8106 14 8 2.4636 -3.3112 2.0249 15 7 3.6399 -3.6268 3.8792 16 6 3.0352 -4.9442 4.0919 17 6 3.6088 -5.5690 5.3653 18 6 2.9872 -6.9243 5.5838 19 1 2.2566 -7.3024 4.8841 20 6 3.3514 -7.6816 6.6769 21 7 2.8093 -8.8646 6.8672 22 14 4.6157 -7.0279 7.8866 23 1 3.9271 -6.2638 8.9577 24 1 5.3586 -8.1642 8.4886 25 1 5.5665 -6.1361 7.1754 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1200 1.4460 0.1475 30 1 1.8022 1.9119 -0.9547 31 1 1.5613 1.9972 0.8069 32 1 1.6767 -1.7490 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 4.4186 -1.4799 -0.3787 36 1 4.0699 0.2717 -0.2003 37 1 5.8926 -1.4552 3.5050 38 1 5.7205 -2.6941 2.2165 39 1 4.2964 -3.2873 4.5074 40 1 1.9555 -4.8360 4.1944 41 1 3.2568 -5.5874 3.2402 42 1 4.6885 -5.6771 5.2624 43 1 3.3876 -4.9258 6.2171 44 1 3.0652 -9.3972 7.6365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330864578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:11 Heat of formation + Delta-G solvation = -82.649691 kcal Electronic energy + Delta-G solvation = -25008.078757 eV Core-core repulsion = 21472.216074 eV Total energy + Delta-G solvation = -3535.862682 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.07031 -40.39953 -37.43346 -36.94136 -36.52849 -34.87871 -32.96804 -31.47680 -28.93272 -28.29487 -27.92515 -27.04483 -25.64521 -23.43825 -22.59846 -21.38932 -20.25955 -19.05884 -18.69591 -18.40137 -17.63321 -16.78556 -16.59012 -16.50750 -16.22646 -15.99118 -15.67439 -15.43204 -15.20164 -14.85843 -14.75247 -14.58694 -14.25671 -13.96725 -13.52298 -13.38559 -13.20019 -13.11260 -13.03756 -12.93897 -12.83825 -12.63061 -12.29896 -12.18488 -12.06663 -11.96570 -11.76961 -11.60504 -11.53751 -10.98874 -10.81085 -10.67583 -10.13427 -9.95474 -8.96182 -8.32154 -6.40247 0.49589 0.81590 1.34726 1.38076 1.41131 1.50846 1.52338 1.66389 2.23244 2.35558 3.01685 3.02916 3.33903 3.53916 3.72166 3.83836 3.86239 3.91632 4.12003 4.18200 4.30098 4.33931 4.36930 4.42083 4.63628 4.65838 4.69634 4.75231 4.85278 4.90471 4.93323 5.00239 5.09221 5.17044 5.28435 5.33259 5.36462 5.37351 5.60596 6.03092 6.19177 6.50608 6.67675 7.01356 7.21148 7.24536 8.84960 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019867 B = 0.003288 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.065738 B = 8513.918088 C = 9462.059635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.156 4.156 5 C 0.532 3.468 6 O -0.561 6.561 7 N -0.602 5.602 8 C 0.141 3.859 9 S -0.255 6.255 10 C -0.062 4.062 11 C 0.120 3.880 12 H 0.121 0.879 13 C 0.497 3.503 14 O -0.566 6.566 15 N -0.712 5.712 16 C 0.150 3.850 17 C -0.010 4.010 18 C -0.542 4.542 19 H 0.024 0.976 20 C 0.003 3.997 21 N -0.952 5.952 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.231 1.231 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.156 0.844 37 H 0.163 0.837 38 H 0.108 0.892 39 H 0.415 0.585 40 H 0.031 0.969 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.034 0.966 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.506 26.784 -15.699 32.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.083 4.083 3 C -0.197 4.197 4 C -0.214 4.214 5 C 0.321 3.679 6 O -0.437 6.437 7 N -0.338 5.338 8 C -0.091 4.091 9 S -0.028 6.028 10 C -0.210 4.210 11 C 0.010 3.990 12 H 0.138 0.862 13 C 0.281 3.719 14 O -0.444 6.444 15 N -0.365 5.365 16 C 0.026 3.974 17 C -0.048 4.048 18 C -0.581 4.581 19 H 0.042 0.958 20 C -0.194 4.194 21 N -0.592 5.592 22 Si 0.783 3.217 23 H -0.192 1.192 24 H -0.212 1.212 25 H -0.154 1.154 26 H 0.068 0.932 27 H 0.113 0.887 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.173 0.827 37 H 0.181 0.819 38 H 0.126 0.874 39 H 0.252 0.748 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.476 26.883 -15.868 32.347 hybrid contribution -1.001 -1.625 1.274 2.294 sum 7.475 25.259 -14.594 30.114 Atomic orbital electron populations 1.21667 0.92262 1.01479 1.02917 1.20865 0.97808 0.97669 0.91923 1.22014 1.01604 0.91368 1.04702 1.22321 1.03008 0.99897 0.96155 1.21294 0.80058 0.77655 0.88888 1.90723 1.55268 1.51940 1.45815 1.48227 1.07336 1.62900 1.15298 1.25191 0.85569 1.06952 0.91375 1.88392 1.27529 1.54057 1.32854 1.24611 0.90755 1.01712 1.03942 1.21280 0.94585 0.91892 0.91232 0.86183 1.21362 0.82067 0.87361 0.81153 1.90690 1.34327 1.72811 1.46575 1.45956 1.44973 1.18656 1.26876 1.20966 0.96050 0.82181 0.98242 1.19636 0.97405 0.94285 0.93441 1.21252 1.24664 1.02230 1.09922 0.95764 1.26130 0.98705 0.94665 0.99908 1.70084 1.45472 1.13061 1.30559 0.85506 0.79118 0.78569 0.78483 1.19178 1.21166 1.15371 0.93174 0.88691 0.94760 0.90825 0.88092 0.92335 0.94259 0.88197 0.89610 0.87616 0.82734 0.81880 0.87392 0.74826 0.95020 0.93786 0.93797 0.94739 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 7.78 71.98 0.56 -1.94 16 2 C -0.08 -1.42 0.75 -52.92 -0.04 -1.46 16 3 C -0.14 -1.47 8.23 71.98 0.59 -0.88 16 4 C -0.16 -2.14 8.07 71.98 0.58 -1.56 16 5 C 0.53 14.47 5.64 87.66 0.49 14.97 16 6 O -0.56 -21.45 14.35 17.07 0.24 -21.20 16 7 N -0.60 -13.35 2.76 -807.46 -2.23 -15.58 16 8 C 0.14 1.99 5.24 127.56 0.67 2.66 16 9 S -0.26 -3.65 23.43 -56.49 -1.32 -4.97 16 10 C -0.06 -0.90 6.68 72.51 0.48 -0.42 16 11 C 0.12 2.70 2.91 44.96 0.13 2.83 16 12 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 13 C 0.50 16.39 6.43 87.66 0.56 16.95 16 14 O -0.57 -24.55 14.42 17.08 0.25 -24.31 16 15 N -0.71 -22.58 5.42 -463.05 -2.51 -25.09 16 16 C 0.15 6.33 5.61 86.38 0.48 6.82 16 17 C -0.01 -0.44 4.16 29.85 0.12 -0.32 16 18 C -0.54 -31.51 9.66 25.60 0.25 -31.27 16 19 H 0.02 1.59 7.99 -2.91 -0.02 1.57 16 20 C 0.00 0.17 5.47 84.65 0.46 0.63 16 21 N -0.95 -60.07 13.96 21.45 0.30 -59.78 16 22 Si 0.96 42.24 27.47 68.60 1.88 44.12 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 24 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.23 -8.79 6.54 99.48 0.65 -8.14 16 26 H 0.05 1.12 8.03 -2.39 -0.02 1.10 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.62 5.31 -2.39 -0.01 0.61 16 30 H 0.10 0.52 8.13 -2.38 -0.02 0.50 16 31 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 0.87 3.78 -2.39 -0.01 0.86 16 35 H 0.11 1.44 7.24 -2.38 -0.02 1.42 16 36 H 0.16 1.35 3.98 -2.38 -0.01 1.34 16 37 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.11 1.70 7.85 -2.39 -0.02 1.68 16 39 H 0.41 9.66 8.23 -92.71 -0.76 8.90 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.04 1.79 7.20 -2.39 -0.02 1.78 16 43 H 0.03 1.44 7.57 -2.39 -0.02 1.43 16 44 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -84.74 356.07 2.16 -82.58 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.19 Total: 17.21 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 5.35 Total: 7.01 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -4.44 Total: -100.44 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: 0.49 Total: -45.51 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.88 Total: 44.12 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.32 Total: -4.97 kcal Total: -84.74 2.16 -82.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330864578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.068 kcal (2) G-P(sol) polarization free energy of solvation -84.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds