Wall clock time and date at job start Fri Apr 10 2020 23:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.46448 * 2 1 4 4 C 1.38329 * 120.35090 * 124.72567 * 3 2 1 5 5 C 1.39464 * 118.53963 * 180.29239 * 4 3 2 6 6 O 1.35517 * 120.45483 * 179.97438 * 5 4 3 7 7 N 1.32679 * 119.08616 * 359.97438 * 5 4 3 8 8 C 1.32690 * 120.62784 * 0.02562 * 7 5 4 9 9 C 1.48073 * 119.20409 * 179.97438 * 8 7 5 10 10 C 1.41654 * 119.92555 * 179.75010 * 9 8 7 11 11 C 1.35568 * 119.52919 * 179.71823 * 10 9 8 12 12 C 1.41624 * 119.39885 * 0.54953 * 11 10 9 13 13 N 1.31550 * 120.07268 * 179.73620 * 12 11 10 14 14 C 1.46497 * 119.99846 * 353.02291 * 13 12 11 15 15 C 1.52997 * 109.47279 * 113.94890 * 14 13 12 16 16 C 1.50707 * 109.47028 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99663 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99954 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99976 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00033 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47065 * 60.00599 * 20 18 16 22 22 H 1.48500 * 109.47229 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47190 * 300.00631 * 20 18 16 24 24 N 1.37493 * 119.85973 * 359.71463 * 12 11 10 25 25 H 0.96998 * 119.77643 * 179.97438 * 24 12 11 26 26 C 1.35806 * 120.45579 * 0.02562 * 24 12 11 27 27 N 1.32336 * 120.36264 * 304.99802 * 3 2 1 28 28 H 1.09004 * 109.46659 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46936 * 299.99342 * 1 2 3 30 30 H 1.08997 * 109.47055 * 60.00052 * 1 2 3 31 31 H 1.08996 * 109.46653 * 240.00520 * 2 1 3 32 32 H 1.08997 * 109.47055 * 119.99948 * 2 1 3 33 33 H 1.07997 * 120.73010 * 0.24811 * 4 3 2 34 34 H 0.96703 * 114.00372 * 269.99516 * 6 5 4 35 35 H 1.07996 * 120.23832 * 359.97438 * 10 9 8 36 36 H 1.08003 * 120.29484 * 180.26521 * 11 10 9 37 37 H 1.08999 * 109.47229 * 233.94854 * 14 13 12 38 38 H 1.09002 * 109.47303 * 353.95069 * 14 13 12 39 39 H 1.08994 * 109.47460 * 299.99621 * 15 14 13 40 40 H 1.09001 * 109.47233 * 60.00519 * 15 14 13 41 41 H 0.96997 * 120.00013 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.69374 * 180.02562 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.9063 1.8533 0.9811 5 6 3.3423 3.1776 0.9484 6 8 4.1982 3.6424 1.8907 7 7 2.9074 3.9762 -0.0178 8 6 2.0689 3.5247 -0.9418 9 6 1.6033 4.4434 -2.0056 10 6 0.7122 3.9762 -3.0027 11 6 0.2865 4.8257 -3.9696 12 6 0.7499 6.1640 -3.9725 13 7 0.3494 6.9982 -4.9075 14 6 -0.4524 6.5085 -6.0316 15 6 -1.8547 7.1163 -5.9609 16 6 -2.6792 6.6129 -7.1177 17 1 -2.2464 5.9278 -7.8315 18 6 -3.9864 7.0264 -7.2640 19 7 -4.5135 7.8604 -6.3944 20 14 -5.0086 6.4020 -8.6973 21 1 -5.1062 4.9218 -8.6280 22 1 -6.3696 6.9919 -8.6288 23 1 -4.3624 6.7961 -9.9750 24 7 1.6189 6.5897 -2.9958 25 1 1.9358 7.5064 -2.9991 26 6 2.0375 5.7351 -2.0268 27 7 1.6377 2.2698 -0.9354 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2431 1.1804 1.7557 34 1 3.7618 4.0153 2.6689 35 1 0.3711 2.9515 -2.9904 36 1 -0.3963 4.4837 -4.7334 37 1 0.0220 6.7975 -6.9694 38 1 -0.5243 5.4221 -5.9805 39 1 -2.3291 6.8272 -5.0232 40 1 -1.7828 8.2027 -6.0121 41 1 -5.4330 8.1515 -6.4975 42 1 2.7199 6.0826 -1.2653 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343587754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:25 Heat of formation + Delta-G solvation = 56.151344 kcal Electronic energy + Delta-G solvation = -24361.246502 eV Core-core repulsion = 20728.251484 eV Total energy + Delta-G solvation = -3632.995018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.46854 -40.04481 -38.06269 -35.79776 -35.02595 -33.62930 -32.90072 -32.02670 -31.22629 -30.05054 -28.17448 -25.38136 -25.14432 -24.01230 -23.39888 -22.10836 -21.75272 -20.09175 -19.32511 -18.04726 -17.86895 -16.52216 -16.29835 -16.15880 -15.73549 -15.36602 -15.05882 -14.70239 -14.55749 -14.51405 -14.35976 -14.09339 -13.92994 -13.00182 -12.83329 -12.42905 -12.36104 -12.21716 -11.90173 -11.67030 -11.49317 -11.41691 -10.95774 -10.89720 -10.80395 -10.57282 -10.53929 -10.22108 -10.01088 -9.59576 -9.49668 -9.18431 -9.12801 -8.50443 -8.27476 -6.86463 -5.95895 -3.99409 0.35044 0.71692 1.27170 2.09734 2.89523 2.98033 3.35978 3.39923 3.42407 3.46348 3.65695 3.93783 3.98748 4.48479 4.60250 4.63818 4.71513 4.76347 4.91462 5.05245 5.06732 5.18579 5.22786 5.39249 5.44939 5.54506 5.55962 5.68961 5.71453 5.87502 6.01830 6.23360 6.37987 6.48820 6.58658 6.72132 6.79018 6.98335 7.02349 7.07123 7.35173 7.73582 7.86508 7.86786 8.04708 8.42040 8.62438 9.07899 9.64125 11.15211 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.002514 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.646094 B =11134.814687 C =12324.621267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C 0.203 3.797 4 C -0.267 4.267 5 C 0.372 3.628 6 O -0.478 6.478 7 N -0.557 5.557 8 C 0.426 3.574 9 C -0.186 4.186 10 C -0.017 4.017 11 C -0.206 4.206 12 C 0.363 3.637 13 N -0.587 5.587 14 C 0.066 3.934 15 C 0.031 3.969 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 N -0.587 5.587 25 H 0.421 0.579 26 C 0.217 3.783 27 N -0.520 5.520 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.407 0.593 35 H 0.136 0.864 36 H 0.152 0.848 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.013 0.987 40 H 0.022 0.978 41 H 0.261 0.739 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.773 -14.120 19.764 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C 0.057 3.943 4 C -0.291 4.291 5 C 0.184 3.816 6 O -0.286 6.286 7 N -0.283 5.283 8 C 0.164 3.836 9 C -0.199 4.199 10 C -0.042 4.042 11 C -0.229 4.229 12 C 0.092 3.908 13 N -0.309 5.309 14 C -0.063 4.063 15 C -0.006 4.006 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 N -0.199 5.199 25 H 0.259 0.741 26 C 0.080 3.920 27 N -0.236 5.236 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.166 0.834 34 H 0.266 0.734 35 H 0.154 0.846 36 H 0.169 0.831 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.031 0.969 40 H 0.040 0.960 41 H 0.071 0.929 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 16.684 -12.664 18.327 27.832 hybrid contribution -0.657 -1.041 0.454 1.312 sum 16.027 -13.705 18.781 28.239 Atomic orbital electron populations 1.21688 0.93294 1.02213 1.03150 1.20581 0.97634 0.89291 1.03756 1.21607 0.89054 0.96242 0.87429 1.22679 1.03804 0.97965 1.04675 1.19290 0.85778 0.88376 0.88169 1.84714 1.32150 1.81306 1.30427 1.67835 1.14398 1.40262 1.05803 1.20640 0.86085 0.87670 0.89217 1.16895 1.10538 0.92118 1.00306 1.20942 0.92298 1.00002 0.90934 1.21787 1.05454 0.92799 1.02858 1.18871 0.91296 0.90407 0.90218 1.72306 1.19707 1.33452 1.05427 1.22330 0.95933 0.97468 0.90567 1.19079 0.87946 0.96749 0.96869 1.21164 0.96795 1.27661 1.10492 0.92647 1.25015 0.97891 0.95113 0.96340 1.69974 1.14465 1.33056 1.35803 0.86633 0.79265 0.79079 0.82870 1.20204 1.21293 1.20194 1.41415 1.40469 1.14264 1.23758 0.74145 1.21913 0.91902 0.89502 0.88675 1.68183 1.27025 1.03128 1.25281 0.91900 0.92833 0.90993 0.89089 0.89880 0.83433 0.73359 0.84616 0.83054 0.91322 0.94510 0.96860 0.95963 0.92945 0.80897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.78 37.16 0.36 -0.63 16 2 C -0.07 -0.48 6.36 -27.88 -0.18 -0.65 16 3 C 0.20 1.88 6.20 -82.34 -0.51 1.37 16 4 C -0.27 -2.19 9.75 -39.09 -0.38 -2.57 16 5 C 0.37 3.55 7.83 -16.73 -0.13 3.42 16 6 O -0.48 -3.50 13.57 -18.25 -0.25 -3.74 16 7 N -0.56 -6.38 9.40 -11.22 -0.11 -6.48 16 8 C 0.43 5.29 7.55 -156.88 -1.18 4.11 16 9 C -0.19 -2.40 5.84 -105.26 -0.61 -3.01 16 10 C -0.02 -0.24 9.56 -39.23 -0.38 -0.62 16 11 C -0.21 -3.39 9.16 -39.24 -0.36 -3.75 16 12 C 0.36 6.28 7.65 -156.24 -1.20 5.09 16 13 N -0.59 -12.24 10.68 -60.31 -0.64 -12.88 16 14 C 0.07 1.52 6.11 -4.05 -0.02 1.49 16 15 C 0.03 0.87 5.30 -27.88 -0.15 0.72 16 16 C -0.52 -15.26 9.11 -34.44 -0.31 -15.58 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 20 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 N -0.59 -7.56 5.37 -11.94 -0.06 -7.63 16 25 H 0.42 4.49 8.92 -40.82 -0.36 4.12 16 26 C 0.22 2.42 10.71 -16.50 -0.18 2.25 16 27 N -0.52 -6.13 9.06 -7.49 -0.07 -6.20 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.62 7.98 -51.93 -0.41 0.21 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.34 7.93 -51.93 -0.41 -0.07 16 33 H 0.15 0.79 8.00 -52.49 -0.42 0.37 16 34 H 0.41 0.87 9.06 45.56 0.41 1.28 16 35 H 0.14 1.77 7.55 -52.49 -0.40 1.38 16 36 H 0.15 2.64 5.79 -52.48 -0.30 2.34 16 37 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.04 0.79 5.24 -51.93 -0.27 0.52 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.17 1.46 7.40 -52.49 -0.39 1.07 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -36.43 361.37 -9.93 -46.36 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -4.64 Total: 1.84 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -5.33 Total: -6.76 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.14 Total: -60.18 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -0.25 Total: -3.74 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.43 -9.93 -46.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343587754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.513 kcal (2) G-P(sol) polarization free energy of solvation -36.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds