Wall clock time and date at job start Fri Apr 10 2020 23:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.50693 * 109.47004 * 2 1 4 4 N 1.36450 * 125.52718 * 264.97262 * 3 2 1 5 5 H 0.96993 * 125.85273 * 0.02562 * 4 3 2 6 6 N 1.40162 * 108.29326 * 180.02562 * 4 3 2 7 7 H 0.97004 * 126.36468 * 179.97438 * 6 4 3 8 8 C 1.37430 * 107.27106 * 0.02562 * 6 4 3 9 9 N 1.32947 * 126.37849 * 180.02562 * 8 6 4 10 10 C 1.33802 * 119.99947 * 0.02562 * 9 8 6 11 11 O 1.21841 * 119.99724 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00156 * 179.72452 * 10 9 8 13 13 C 1.39120 * 120.00225 * 175.98932 * 12 10 9 14 14 C 1.39511 * 119.84052 * 215.03660 * 13 12 10 15 15 C 1.36359 * 120.17147 * 179.75907 * 14 13 12 16 16 C 1.40874 * 119.82500 * 0.53575 * 15 14 13 17 17 C 1.41147 * 120.15883 * 179.69746 * 16 15 14 18 18 H 1.08000 * 120.00010 * 214.80871 * 17 16 15 19 19 C 1.39889 * 119.99856 * 34.80516 * 17 16 15 20 20 N 1.30883 * 120.00476 * 355.56098 * 19 17 16 21 21 Si 1.86805 * 119.99958 * 175.55708 * 19 17 16 22 22 H 1.48499 * 109.46736 * 60.00145 * 21 19 17 23 23 H 1.48497 * 109.47123 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46970 * 300.00453 * 21 19 17 25 25 C 1.40879 * 119.68135 * 359.72033 * 16 15 14 26 26 C 1.36352 * 119.83077 * 0.02562 * 25 16 15 27 27 C 1.34977 * 125.52480 * 85.30370 * 3 2 1 28 28 C 1.50695 * 125.88040 * 359.97438 * 27 3 2 29 29 H 1.08993 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46804 * 300.00006 * 1 2 3 31 31 H 1.09002 * 109.46611 * 59.99751 * 1 2 3 32 32 H 1.08994 * 109.46896 * 239.99682 * 2 1 3 33 33 H 1.09002 * 109.46611 * 120.00249 * 2 1 3 34 34 H 0.96998 * 119.99365 * 355.99162 * 12 10 9 35 35 H 1.08008 * 119.91294 * 359.97438 * 14 13 12 36 36 H 1.07992 * 120.08643 * 180.25478 * 15 14 13 37 37 H 0.96995 * 120.00162 * 179.97438 * 20 19 17 38 38 H 1.08003 * 120.08313 * 179.97438 * 25 16 15 39 39 H 1.08000 * 119.91853 * 180.02562 * 26 25 16 40 40 H 1.08999 * 109.47421 * 270.23370 * 28 27 3 41 41 H 1.09003 * 109.47329 * 30.23030 * 28 27 3 42 42 H 1.09000 * 109.47548 * 150.23142 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3884 2.1359 -1.1062 5 1 2.3608 1.8172 -2.0219 6 7 2.8009 3.4100 -0.6925 7 1 3.1091 4.1291 -1.2659 8 6 2.6885 3.4506 0.6766 9 7 2.9807 4.4832 1.4614 10 6 3.4324 5.6234 0.9265 11 8 3.5765 5.7151 -0.2799 12 7 3.7233 6.6720 1.7215 13 6 4.2715 7.8281 1.1753 14 6 5.2049 8.5654 1.9044 15 6 5.7501 9.6969 1.3736 16 6 5.3601 10.1271 0.0901 17 6 5.9152 11.3008 -0.4635 18 1 5.3123 11.9383 -1.0932 19 6 7.2462 11.6383 -0.1965 20 7 7.9509 10.9140 0.6353 21 14 8.0180 13.1228 -1.0272 22 1 7.2578 14.3451 -0.6622 23 1 9.4270 13.2636 -0.5798 24 1 7.9828 12.9396 -2.5005 25 6 4.4130 9.3804 -0.6380 26 6 3.8803 8.2481 -0.0963 27 6 2.2090 2.1902 1.0948 28 6 1.9381 1.7763 2.5183 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.5505 6.6205 2.6746 35 1 5.4990 8.2371 2.8905 36 1 6.4756 10.2643 1.9375 37 1 8.8739 11.1479 0.8201 38 1 4.1090 9.7045 -1.6224 39 1 3.1544 7.6744 -0.6534 40 1 0.9061 2.0144 2.7758 41 1 2.1000 0.7033 2.6218 42 1 2.6122 2.3116 3.1870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348219766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:46 Heat of formation + Delta-G solvation = 82.296885 kcal Electronic energy + Delta-G solvation = -24810.913554 eV Core-core repulsion = 21179.052292 eV Total energy + Delta-G solvation = -3631.861262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63350 -39.36628 -37.28554 -35.14696 -34.30708 -33.74662 -32.71265 -31.62875 -29.90777 -29.39726 -28.51775 -26.94102 -25.01436 -24.52119 -22.47737 -21.17839 -20.40084 -19.67654 -19.50544 -18.39893 -17.22451 -16.91857 -16.24764 -15.71272 -15.51446 -15.06286 -14.81018 -14.57869 -14.33603 -13.84460 -13.73984 -13.05111 -12.91733 -12.82379 -12.77204 -12.56601 -12.34998 -11.99937 -11.69054 -11.60798 -11.53356 -11.22523 -11.08508 -11.02325 -10.77994 -10.60607 -10.52561 -9.74222 -9.38738 -9.31973 -9.20762 -8.79908 -8.58535 -7.54342 -7.39686 -6.63539 -6.49800 -4.21665 1.11122 1.67595 2.39251 2.89182 3.14310 3.17116 3.21457 3.30304 3.74242 3.90369 4.05735 4.19601 4.43364 4.45952 4.69262 4.84485 4.88259 4.97738 5.20739 5.32931 5.46174 5.58513 5.68613 5.75317 5.77545 5.86171 5.97258 6.17279 6.35963 6.50410 6.65504 6.81579 6.95466 7.15064 7.20173 7.35958 7.46381 7.54937 7.78349 7.98400 8.02067 8.14819 8.22877 8.43829 8.61985 8.76089 9.04443 9.09085 9.50490 10.41042 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.036750 B = 0.002357 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.722144 B =11875.950062 C =12249.924530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.064 4.064 3 C 0.170 3.830 4 N -0.496 5.496 5 H 0.441 0.559 6 N -0.492 5.492 7 H 0.457 0.543 8 C 0.495 3.505 9 N -0.650 5.650 10 C 0.665 3.335 11 O -0.637 6.637 12 N -0.639 5.639 13 C 0.027 3.973 14 C -0.125 4.125 15 C -0.139 4.139 16 C 0.095 3.905 17 C -0.463 4.463 18 H 0.073 0.927 19 C 0.069 3.931 20 N -0.815 5.815 21 Si 0.915 3.085 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.268 1.268 25 C -0.205 4.205 26 C -0.089 4.089 27 C -0.232 4.232 28 C -0.061 4.061 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.400 0.600 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.277 0.723 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.010 -23.099 0.102 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 C 0.050 3.950 4 N -0.214 5.214 5 H 0.286 0.714 6 N -0.234 5.234 7 H 0.316 0.684 8 C 0.238 3.762 9 N -0.411 5.411 10 C 0.366 3.634 11 O -0.520 6.520 12 N -0.281 5.281 13 C -0.066 4.066 14 C -0.146 4.146 15 C -0.159 4.159 16 C 0.093 3.907 17 C -0.494 4.494 18 H 0.092 0.908 19 C -0.145 4.145 20 N -0.443 5.443 21 Si 0.740 3.260 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.193 1.193 25 C -0.225 4.225 26 C -0.109 4.109 27 C -0.246 4.246 28 C -0.118 4.118 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.234 0.766 35 H 0.110 0.890 36 H 0.149 0.851 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.555 -22.647 -0.188 25.425 hybrid contribution 0.806 0.993 -1.551 2.011 sum -10.749 -21.654 -1.740 24.237 Atomic orbital electron populations 1.21764 0.93207 1.02646 1.03127 1.20388 0.97040 0.88191 1.04720 1.20786 0.94599 0.94218 0.85410 1.44057 1.63924 1.04915 1.08490 0.71393 1.47189 1.63205 1.04418 1.08585 0.68372 1.20125 0.85301 0.93196 0.77613 1.69373 1.38841 1.01189 1.31668 1.17215 0.78529 0.83414 0.84284 1.90515 1.60990 1.84868 1.15666 1.41773 1.63401 1.12407 1.10492 1.17226 1.02500 0.89856 0.97065 1.20343 0.97274 0.97990 0.98952 1.21170 1.01721 0.97170 0.95849 1.17695 0.90207 0.92311 0.90502 1.19412 0.96142 1.06728 1.27164 0.90836 1.25855 0.97573 0.96994 0.94127 1.69768 1.09537 1.36268 1.28726 0.86274 0.78049 0.81456 0.80238 1.19127 1.20519 1.19254 1.20786 1.05291 0.97108 0.99344 1.20406 0.99856 0.95938 0.94670 1.18960 1.16879 0.92117 0.96653 1.19957 1.01857 1.00003 0.90029 0.91362 0.91363 0.92492 0.90121 0.87983 0.76611 0.89029 0.85059 0.91252 0.88864 0.87587 0.92060 0.92309 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.90 37.16 0.37 -0.12 16 2 C -0.06 -0.22 6.18 -27.88 -0.17 -0.40 16 3 C 0.17 1.31 6.44 -81.70 -0.53 0.78 16 4 N -0.50 -4.10 7.40 33.67 0.25 -3.85 16 5 H 0.44 2.00 8.96 -182.56 -1.64 0.37 16 6 N -0.49 -6.69 7.05 31.33 0.22 -6.47 16 7 H 0.46 7.08 6.36 -182.55 -1.16 5.92 16 8 C 0.49 7.61 7.69 -155.27 -1.19 6.42 16 9 N -0.65 -12.08 10.55 -15.79 -0.17 -12.24 16 10 C 0.66 14.50 8.30 -87.79 -0.73 13.77 16 11 O -0.64 -14.90 11.12 5.06 0.06 -14.84 16 12 N -0.64 -13.93 5.31 -14.30 -0.08 -14.00 16 13 C 0.03 0.67 6.30 -83.60 -0.53 0.15 16 14 C -0.13 -3.14 9.90 -39.78 -0.39 -3.53 16 15 C -0.14 -3.82 8.61 -39.26 -0.34 -4.16 16 16 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 17 C -0.46 -12.97 9.02 -37.86 -0.34 -13.31 16 18 H 0.07 1.97 7.85 -52.49 -0.41 1.56 16 19 C 0.07 1.82 5.42 -17.34 -0.09 1.73 16 20 N -0.82 -22.25 10.60 55.54 0.59 -21.66 16 21 Si 0.91 19.86 29.56 -169.99 -5.03 14.83 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 C -0.21 -5.54 9.74 -39.26 -0.38 -5.93 16 26 C -0.09 -2.31 8.61 -39.78 -0.34 -2.65 16 27 C -0.23 -2.54 6.12 -104.66 -0.64 -3.18 16 28 C -0.06 -0.52 10.10 36.00 0.36 -0.16 16 29 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.10 0.26 7.21 -51.93 -0.37 -0.12 16 34 H 0.40 7.59 8.91 -40.82 -0.36 7.23 16 35 H 0.09 2.05 8.06 -52.48 -0.42 1.62 16 36 H 0.13 3.69 6.13 -52.49 -0.32 3.37 16 37 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 38 H 0.09 2.38 8.06 -52.48 -0.42 1.95 16 39 H 0.11 2.74 6.22 -52.49 -0.33 2.41 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.34 7.16 -51.93 -0.37 -0.03 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -35.32 352.85 -11.86 -47.19 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -7.48 Total: 14.21 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -5.54 Total: -8.47 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.82 Total: -58.23 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.06 Total: -14.84 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.32 -11.86 -47.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348219766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.482 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds