Wall clock time and date at job start Fri Apr 10 2020 23:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30632 * 125.84672 * 2 1 4 4 C 1.34013 * 109.78688 * 179.97438 * 3 2 1 5 5 C 1.48297 * 125.65552 * 179.97438 * 4 3 2 6 6 C 1.39496 * 119.97338 * 359.73085 * 5 4 3 7 7 C 1.37666 * 120.02353 * 179.76509 * 6 5 4 8 8 C 1.39712 * 119.97414 * 0.50709 * 7 6 5 9 9 C 1.47715 * 120.02331 * 179.76992 * 8 7 6 10 10 O 1.21566 * 120.00206 * 320.52812 * 9 8 7 11 11 N 1.34777 * 120.00070 * 140.53371 * 9 8 7 12 12 C 1.46504 * 119.99882 * 4.87190 * 11 9 8 13 13 C 1.46493 * 120.00240 * 184.87335 * 11 9 8 14 14 H 1.09001 * 109.47427 * 359.97438 * 13 11 9 15 15 C 1.53006 * 109.47346 * 239.99997 * 13 11 9 16 16 C 1.50697 * 109.47318 * 119.99904 * 13 11 9 17 17 H 1.08007 * 119.99804 * 359.97438 * 16 13 11 18 18 C 1.37876 * 120.00297 * 180.02562 * 16 13 11 19 19 N 1.31510 * 120.00040 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 120.00223 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47181 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47087 * 119.99843 * 20 18 16 23 23 H 1.48503 * 109.47013 * 240.00048 * 20 18 16 24 24 C 1.39714 * 119.94964 * 359.74073 * 8 7 6 25 25 C 1.37670 * 119.97314 * 0.02562 * 24 8 7 26 26 N 1.31548 * 108.69048 * 359.97438 * 4 3 2 27 27 N 1.34572 * 125.84688 * 179.69001 * 2 1 3 28 28 H 0.97004 * 126.73732 * 359.97438 * 27 2 1 29 29 H 1.08992 * 109.46948 * 90.03013 * 1 2 3 30 30 H 1.08998 * 109.46985 * 210.02470 * 1 2 3 31 31 H 1.08997 * 109.47035 * 330.02517 * 1 2 3 32 32 H 1.08001 * 119.98744 * 359.97438 * 6 5 4 33 33 H 1.07998 * 120.01555 * 180.22885 * 7 6 5 34 34 H 1.09004 * 109.47185 * 85.75494 * 12 11 9 35 35 H 1.08996 * 109.47219 * 205.75529 * 12 11 9 36 36 H 1.08994 * 109.47242 * 325.75938 * 12 11 9 37 37 H 1.09003 * 109.47150 * 180.02562 * 15 13 11 38 38 H 1.08993 * 109.46803 * 299.99971 * 15 13 11 39 39 H 1.08996 * 109.46827 * 60.00075 * 15 13 11 40 40 H 0.97000 * 120.00175 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.01056 * 180.02562 * 24 8 7 42 42 H 1.07996 * 119.98500 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2721 1.0589 0.0000 4 6 3.5599 0.6882 0.0006 5 6 4.7239 1.6070 0.0002 6 6 4.5223 2.9873 -0.0065 7 6 5.6021 3.8412 -0.0019 8 6 6.9003 3.3248 -0.0013 9 6 8.0598 4.2401 -0.0016 10 8 8.0335 5.2542 -0.6714 11 7 9.1469 3.9508 0.7407 12 6 9.2231 2.6786 1.4633 13 6 10.2523 4.9084 0.8251 14 1 10.0173 5.7883 0.2263 15 6 11.5319 4.2583 0.2950 16 6 10.4543 5.3170 2.2615 17 1 9.8222 4.9049 3.0342 18 6 11.4455 6.2178 2.5891 19 7 12.2148 6.7200 1.6482 20 14 11.6964 6.7238 4.3697 21 1 10.7089 6.0212 5.2279 22 1 13.0714 6.3618 4.7981 23 1 11.5079 8.1912 4.4985 24 6 7.1011 1.9422 0.0001 25 6 6.0197 1.0902 0.0004 26 7 3.6203 -0.6259 0.0015 27 7 2.2951 -1.0908 0.0059 28 1 2.0048 -2.0164 0.0113 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 3.5187 3.3862 -0.0118 33 1 5.4459 4.9098 -0.0034 34 1 9.6141 1.9069 0.8001 35 1 9.8842 2.7880 2.3229 36 1 8.2277 2.3942 1.8043 37 1 12.3545 4.9707 0.3582 38 1 11.7671 3.3783 0.8935 39 1 11.3857 3.9628 -0.7439 40 1 12.9124 7.3534 1.8787 41 1 8.1042 1.5419 0.0010 42 1 6.1746 0.0214 0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360109204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:01:22 Heat of formation + Delta-G solvation = 83.449680 kcal Electronic energy + Delta-G solvation = -24967.057184 eV Core-core repulsion = 21335.245910 eV Total energy + Delta-G solvation = -3631.811273 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.38962 -39.86822 -37.98289 -35.36632 -33.81886 -32.91934 -32.73796 -31.02105 -30.92772 -29.08356 -28.25230 -26.29260 -25.22506 -24.59965 -22.65201 -21.81240 -21.08153 -20.48543 -18.83297 -18.24330 -16.84599 -16.37776 -16.08655 -16.05108 -15.58917 -15.05632 -14.61463 -14.41238 -14.08604 -13.91892 -13.56707 -13.47006 -13.28577 -13.06778 -12.67862 -12.49201 -12.29115 -12.20758 -11.97683 -11.61256 -11.40856 -11.07422 -10.94780 -10.81668 -10.68968 -10.59593 -10.34007 -10.23038 -10.16742 -10.01187 -9.19285 -9.03833 -8.89451 -8.49527 -8.41102 -7.59629 -6.06636 -4.14630 0.60647 1.44227 1.46760 2.25308 2.63973 3.27073 3.34822 3.37539 3.44492 3.53413 3.86072 4.10646 4.18198 4.39246 4.40875 4.83185 4.90004 4.99287 5.02524 5.13830 5.24823 5.27751 5.42262 5.58798 5.68587 5.80301 5.90949 5.93875 5.97394 6.12317 6.37958 6.40045 6.44766 6.51616 6.69765 6.77642 6.84266 6.90168 7.07731 7.42375 7.53944 7.72416 7.74420 8.02555 8.19694 8.50603 8.82569 9.02090 9.51829 10.98746 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027016 B = 0.002557 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.176847 B =10948.050433 C =11078.305959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.284 3.716 3 N -0.530 5.530 4 C 0.278 3.722 5 C -0.014 4.014 6 C -0.081 4.081 7 C -0.075 4.075 8 C -0.095 4.095 9 C 0.542 3.458 10 O -0.545 6.545 11 N -0.583 5.583 12 C 0.077 3.923 13 C 0.257 3.743 14 H 0.064 0.936 15 C -0.146 4.146 16 C -0.526 4.526 17 H 0.061 0.939 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.101 4.101 25 C -0.091 4.091 26 N -0.305 5.305 27 N -0.485 5.485 28 H 0.440 0.560 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.030 0.970 39 H 0.012 0.988 40 H 0.263 0.737 41 H 0.142 0.858 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.557 -17.150 -2.388 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.005 3.995 3 N -0.259 5.259 4 C -0.001 4.001 5 C -0.017 4.017 6 C -0.101 4.101 7 C -0.094 4.094 8 C -0.099 4.099 9 C 0.329 3.671 10 O -0.424 6.424 11 N -0.313 5.313 12 C -0.067 4.067 13 C 0.157 3.843 14 H 0.082 0.918 15 C -0.205 4.205 16 C -0.564 4.564 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.525 5.525 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.119 4.119 25 C -0.111 4.111 26 N -0.134 5.134 27 N -0.203 5.203 28 H 0.286 0.714 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.049 0.951 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.160 0.840 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.826 -16.530 -2.742 25.958 hybrid contribution -0.160 -0.557 1.040 1.191 sum -19.987 -17.087 -1.702 26.350 Atomic orbital electron populations 1.20416 0.83458 1.05139 1.04685 1.24412 0.96696 0.82700 0.95657 1.70471 1.01037 1.29293 1.25064 1.22343 0.91430 0.88940 0.97435 1.17544 0.88655 0.91166 1.04301 1.21094 0.99677 0.91333 0.97970 1.21170 0.90483 1.00674 0.97047 1.20418 0.94709 0.94020 1.00730 1.18245 0.82661 0.85455 0.80723 1.90747 1.81670 1.27336 1.42689 1.48189 1.18602 1.19231 1.45299 1.21942 1.01836 0.85510 0.97412 1.19002 0.80770 0.87313 0.97228 0.91777 1.22082 1.01917 1.00555 0.95905 1.21357 1.16735 1.25940 0.92407 0.92101 1.24896 0.95573 0.95706 0.97625 1.69890 1.20210 1.30330 1.32069 0.86433 0.77893 0.78478 0.84553 1.19782 1.20948 1.20903 1.21614 0.99846 0.92100 0.98376 1.21053 0.90705 1.00256 0.99073 1.78257 0.96251 1.11804 1.27096 1.47993 1.04223 1.10063 1.58061 0.71396 0.88868 0.89813 0.88168 0.84386 0.84459 0.93611 0.89919 0.92062 0.88774 0.95118 0.96901 0.92718 0.84010 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.28 2.39 8.22 -155.73 -1.28 1.11 16 3 N -0.53 -6.48 10.81 -8.57 -0.09 -6.57 16 4 C 0.28 3.72 7.77 -156.60 -1.22 2.51 16 5 C -0.01 -0.19 5.88 -104.82 -0.62 -0.81 16 6 C -0.08 -1.11 9.67 -39.32 -0.38 -1.49 16 7 C -0.07 -1.17 9.61 -39.24 -0.38 -1.55 16 8 C -0.09 -1.63 5.23 -104.92 -0.55 -2.18 16 9 C 0.54 11.77 7.34 -12.39 -0.09 11.68 16 10 O -0.55 -13.89 16.25 5.31 0.09 -13.80 16 11 N -0.58 -12.72 2.75 -176.43 -0.49 -13.21 16 12 C 0.08 1.31 7.83 59.85 0.47 1.78 16 13 C 0.26 6.62 2.63 -69.08 -0.18 6.44 16 14 H 0.06 1.91 6.91 -51.93 -0.36 1.56 16 15 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 16 C -0.53 -14.23 7.96 -34.44 -0.27 -14.51 16 17 H 0.06 1.63 7.41 -52.48 -0.39 1.24 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 20 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.10 -1.45 7.54 -39.24 -0.30 -1.74 16 25 C -0.09 -1.19 9.66 -39.32 -0.38 -1.57 16 26 N -0.31 -3.74 12.41 32.09 0.40 -3.34 16 27 N -0.48 -3.97 7.44 32.61 0.24 -3.72 16 28 H 0.44 1.79 8.96 -182.34 -1.63 0.16 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.14 1.72 7.82 -52.49 -0.41 1.30 16 33 H 0.14 2.12 8.05 -52.49 -0.42 1.70 16 34 H 0.05 0.67 6.90 -51.93 -0.36 0.31 16 35 H 0.08 1.50 7.09 -51.93 -0.37 1.13 16 36 H 0.06 0.93 5.80 -51.93 -0.30 0.63 16 37 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 38 H 0.03 0.67 7.67 -51.93 -0.40 0.28 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.14 1.85 5.32 -52.49 -0.28 1.57 16 42 H 0.13 1.53 7.82 -52.49 -0.41 1.12 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -34.83 352.67 -9.96 -44.79 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.47 Total: 0.71 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -4.56 Total: -1.73 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.69 Total: -51.35 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.83 -9.96 -44.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360109204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.242 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds