Wall clock time and date at job start Fri Apr 10 2020 23:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34783 * 119.99865 * 2 1 4 4 O 1.21595 * 120.00103 * 184.54748 * 3 2 1 5 5 C 1.47517 * 119.99798 * 4.54301 * 3 2 1 6 6 C 1.41043 * 119.39142 * 23.42036 * 5 3 2 7 7 C 1.35187 * 121.65085 * 179.97438 * 6 5 3 8 8 C 1.41377 * 119.93714 * 0.02562 * 7 6 5 9 9 N 1.31926 * 134.40075 * 179.97438 * 8 7 6 10 10 N 1.39921 * 109.06081 * 180.02562 * 9 8 7 11 11 H 0.97007 * 124.98221 * 179.97438 * 10 9 8 12 12 C 1.33815 * 110.03087 * 359.97438 * 10 9 8 13 13 C 1.38545 * 107.83495 * 359.97438 * 12 10 9 14 14 C 1.38220 * 119.39468 * 203.14131 * 5 3 2 15 15 C 1.46496 * 120.00297 * 180.02562 * 2 1 3 16 16 H 1.08997 * 110.64194 * 181.68814 * 15 2 1 17 17 C 1.55158 * 110.87277 * 304.93085 * 15 2 1 18 18 C 1.55133 * 101.48346 * 82.76757 * 17 15 2 19 19 N 1.47422 * 104.72143 * 37.29393 * 18 17 15 20 20 C 1.36938 * 125.64849 * 155.81646 * 19 18 17 21 21 H 1.08006 * 120.00359 * 199.59831 * 20 19 18 22 22 C 1.38818 * 119.99850 * 19.58945 * 20 19 18 23 23 N 1.31617 * 119.99564 * 29.86035 * 22 20 19 24 24 Si 1.86799 * 120.00141 * 209.85102 * 22 20 19 25 25 H 1.48495 * 109.46765 * 180.02562 * 24 22 20 26 26 H 1.48495 * 109.47007 * 300.00427 * 24 22 20 27 27 H 1.48498 * 109.47107 * 60.00511 * 24 22 20 28 28 C 1.47014 * 108.70554 * 335.55810 * 19 18 17 29 29 H 1.09006 * 109.47175 * 264.20376 * 1 2 3 30 30 H 1.09000 * 109.47426 * 24.20342 * 1 2 3 31 31 H 1.08999 * 109.47513 * 144.20485 * 1 2 3 32 32 H 1.08001 * 119.17512 * 0.02562 * 6 5 3 33 33 H 1.08003 * 120.03232 * 180.02562 * 7 6 5 34 34 H 1.07999 * 126.07843 * 180.02562 * 12 10 9 35 35 H 1.07997 * 120.32390 * 0.02562 * 14 5 3 36 36 H 1.08992 * 111.00957 * 201.00651 * 17 15 2 37 37 H 1.09002 * 111.00357 * 324.82760 * 17 15 2 38 38 H 1.09004 * 110.49922 * 278.45635 * 18 17 15 39 39 H 1.08990 * 110.34543 * 156.06084 * 18 17 15 40 40 H 0.96995 * 120.00250 * 6.25714 * 23 22 20 41 41 H 1.08996 * 109.88660 * 120.70297 * 28 19 18 42 42 H 1.09008 * 109.88407 * 241.86686 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3519 1.1690 -0.0835 5 6 1.4046 2.4428 0.1012 6 6 0.1186 2.4571 0.6802 7 6 -0.5943 3.5999 0.7964 8 6 -0.0527 4.8198 0.3306 9 7 -0.4807 6.0673 0.2984 10 7 0.5002 6.8719 -0.2916 11 1 0.4246 7.8289 -0.4311 12 6 1.5579 6.1277 -0.6350 13 6 1.2895 4.8171 -0.2749 14 6 1.9919 3.6027 -0.3679 15 6 2.1974 -1.2687 -0.0006 16 1 3.2725 -1.0916 0.0296 17 6 1.7550 -2.1630 1.1876 18 6 0.4729 -2.8236 0.6162 19 7 0.7775 -3.0646 -0.8059 20 6 0.1852 -4.0100 -1.5999 21 1 0.6695 -4.3312 -2.5103 22 6 -1.0378 -4.5558 -1.2346 23 7 -1.8950 -3.8415 -0.5366 24 14 -1.4671 -6.3039 -1.7340 25 1 -2.8196 -6.6460 -1.2253 26 1 -1.4533 -6.4132 -3.2148 27 1 -0.4697 -7.2420 -1.1591 28 6 1.8182 -2.1177 -1.2322 29 1 -0.3634 -0.1038 1.0225 30 1 -0.3634 0.9373 -0.4213 31 1 -0.3634 -0.8335 -0.6010 32 1 -0.3069 1.5322 1.0406 33 1 -1.5768 3.5808 1.2447 34 1 2.4606 6.4853 -1.1080 35 1 2.9792 3.5758 -0.8050 36 1 2.5141 -2.9104 1.4180 37 1 1.5242 -1.5600 2.0658 38 1 -0.3789 -2.1504 0.7129 39 1 0.2726 -3.7658 1.1262 40 1 -1.7125 -2.9063 -0.3551 41 1 2.6916 -2.6629 -1.5898 42 1 1.4320 -1.4732 -2.0220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033368312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:49 Heat of formation + Delta-G solvation = 118.730446 kcal Electronic energy + Delta-G solvation = -25994.743239 eV Core-core repulsion = 22364.461854 eV Total energy + Delta-G solvation = -3630.281384 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58872 -40.15611 -37.80548 -36.77411 -34.60653 -32.50923 -32.31424 -30.92933 -29.38727 -28.96070 -28.20378 -26.34618 -24.86966 -24.12732 -22.61992 -21.01425 -20.75584 -20.23288 -18.92854 -18.59907 -17.62023 -17.44481 -16.41401 -16.23837 -15.35694 -15.10462 -14.66714 -14.51080 -14.23001 -14.12384 -13.70701 -13.61412 -13.49227 -13.13391 -12.87148 -12.38546 -12.25932 -11.95138 -11.79835 -11.75852 -11.09133 -11.00437 -10.74588 -10.67189 -10.58066 -10.56455 -10.38038 -10.23938 -10.00490 -9.55780 -9.55188 -8.96643 -8.38744 -8.34566 -7.84573 -6.92348 -6.11739 -3.16058 0.27557 1.32943 2.10075 2.34444 2.98229 3.21145 3.50964 3.55196 3.72609 3.79543 3.99361 4.28939 4.59487 4.65605 4.79558 4.92631 5.10247 5.17720 5.23709 5.31157 5.35424 5.37425 5.54550 5.63408 5.71677 5.76695 5.89875 6.06325 6.10287 6.17287 6.20096 6.22435 6.31958 6.39032 6.47754 6.57084 6.65805 6.69159 6.91958 6.99765 7.04392 7.26592 7.66973 7.83346 8.37911 8.49503 9.01073 9.80198 10.37358 11.20129 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.003103 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.378034 B = 9021.248791 C = 9643.949266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.589 5.589 3 C 0.561 3.439 4 O -0.552 6.552 5 C -0.166 4.166 6 C -0.070 4.070 7 C -0.116 4.116 8 C 0.121 3.879 9 N -0.311 5.311 10 N -0.425 5.425 11 H 0.444 0.556 12 C 0.100 3.900 13 C -0.220 4.220 14 C 0.029 3.971 15 C 0.127 3.873 16 H 0.103 0.897 17 C -0.146 4.146 18 C 0.136 3.864 19 N -0.599 5.599 20 C -0.337 4.337 21 H 0.062 0.938 22 C -0.022 4.022 23 N -0.910 5.910 24 Si 1.061 2.939 25 H -0.286 1.286 26 H -0.294 1.294 27 H -0.294 1.294 28 C 0.125 3.875 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.156 0.844 33 H 0.134 0.866 34 H 0.192 0.808 35 H 0.137 0.863 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.048 0.952 40 H 0.267 0.733 41 H 0.035 0.965 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.703 20.040 2.313 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.320 5.320 3 C 0.351 3.649 4 O -0.432 6.432 5 C -0.171 4.171 6 C -0.092 4.092 7 C -0.137 4.137 8 C -0.034 4.034 9 N -0.139 5.139 10 N -0.124 5.124 11 H 0.288 0.712 12 C -0.059 4.059 13 C -0.230 4.230 14 C 0.008 3.992 15 C 0.024 3.976 16 H 0.121 0.879 17 C -0.185 4.185 18 C 0.011 3.989 19 N -0.327 5.327 20 C -0.465 4.465 21 H 0.080 0.920 22 C -0.224 4.224 23 N -0.551 5.551 24 Si 0.891 3.109 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.222 1.222 28 C -0.001 4.001 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.173 0.827 33 H 0.152 0.848 34 H 0.209 0.791 35 H 0.155 0.845 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.129 19.550 2.654 20.157 hybrid contribution 1.700 1.258 -0.583 2.194 sum 5.829 20.808 2.070 21.708 Atomic orbital electron populations 1.22668 0.79528 1.04416 1.01882 1.47625 1.07155 1.05382 1.71859 1.18223 0.86902 0.83508 0.76288 1.90731 1.13679 1.87375 1.51371 1.19482 0.96383 0.93465 1.07766 1.21712 0.92730 0.99256 0.95499 1.19792 1.01208 0.88293 1.04423 1.21117 0.93056 0.92600 0.96591 1.77668 1.10841 1.01806 1.23597 1.46329 1.11915 1.11299 1.42891 0.71150 1.22842 0.93349 0.91090 0.98604 1.19551 0.97712 0.93627 1.12099 1.20603 0.97668 0.88710 0.92241 1.22115 0.96730 0.82110 0.96684 0.87875 1.23195 1.00208 0.98529 0.96586 1.21773 0.93297 0.98252 0.85594 1.44564 1.44361 1.38172 1.05615 1.19685 1.03107 1.16159 1.07549 0.92012 1.25711 0.90912 1.05571 1.00234 1.70808 1.33400 1.09178 1.41668 0.83580 0.75858 0.75963 0.75532 1.21137 1.22064 1.22151 1.21679 0.93214 0.91130 0.94069 0.92044 0.90031 0.88741 0.82662 0.84840 0.79096 0.84532 0.90523 0.91535 0.94753 0.93382 0.92241 0.94733 0.95300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.89 6.67 59.84 0.40 1.29 16 2 N -0.59 -9.85 2.83 -173.08 -0.49 -10.34 16 3 C 0.56 9.32 7.48 -12.48 -0.09 9.22 16 4 O -0.55 -10.52 15.88 5.28 0.08 -10.44 16 5 C -0.17 -2.32 5.53 -105.06 -0.58 -2.90 16 6 C -0.07 -0.87 7.35 -39.61 -0.29 -1.16 16 7 C -0.12 -1.39 10.05 -39.47 -0.40 -1.78 16 8 C 0.12 1.51 7.49 -82.98 -0.62 0.89 16 9 N -0.31 -3.65 12.69 33.30 0.42 -3.23 16 10 N -0.43 -3.10 7.17 30.87 0.22 -2.88 16 11 H 0.44 1.41 8.96 -182.73 -1.64 -0.23 16 12 C 0.10 0.70 12.09 -16.57 -0.20 0.50 16 13 C -0.22 -2.44 6.32 -105.24 -0.66 -3.10 16 14 C 0.03 0.36 9.63 -38.70 -0.37 -0.01 16 15 C 0.13 2.31 3.57 -66.10 -0.24 2.08 16 16 H 0.10 1.87 7.00 -51.93 -0.36 1.51 16 17 C -0.15 -2.61 6.55 -24.46 -0.16 -2.77 16 18 C 0.14 2.99 4.58 -2.41 -0.01 2.98 16 19 N -0.60 -14.71 2.86 -169.94 -0.49 -15.19 16 20 C -0.34 -9.34 9.98 -15.06 -0.15 -9.49 16 21 H 0.06 1.74 7.98 -52.48 -0.42 1.32 16 22 C -0.02 -0.61 5.07 -17.43 -0.09 -0.70 16 23 N -0.91 -26.38 12.99 55.49 0.72 -25.65 16 24 Si 1.06 25.01 30.01 -169.99 -5.10 19.91 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.13 2.66 6.20 -3.07 -0.02 2.64 16 29 H 0.06 0.86 6.73 -51.93 -0.35 0.51 16 30 H 0.08 1.11 4.97 -51.93 -0.26 0.85 16 31 H 0.09 1.82 5.65 -51.93 -0.29 1.53 16 32 H 0.16 1.79 4.14 -52.49 -0.22 1.57 16 33 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.19 0.47 8.06 -52.49 -0.42 0.04 16 35 H 0.14 1.55 7.76 -52.49 -0.41 1.14 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.03 0.77 4.20 -51.93 -0.22 0.55 16 39 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 40 H 0.27 7.59 6.37 -40.82 -0.26 7.33 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.03 0.65 8.04 -51.92 -0.42 0.23 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -34.99 334.73 -9.24 -44.23 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.17 Total: 0.86 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -3.49 Total: -2.31 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.39 Total: -57.30 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.10 Total: 19.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.99 -9.24 -44.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033368312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.957 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds