Wall clock time and date at job start Fri Apr 10 2020 23:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34783 * 119.99865 * 2 1 4 4 O 1.21595 * 120.00103 * 184.54748 * 3 2 1 5 5 C 1.47517 * 119.99798 * 4.54301 * 3 2 1 6 6 C 1.41043 * 119.39142 * 23.42036 * 5 3 2 7 7 C 1.35187 * 121.65085 * 179.97438 * 6 5 3 8 8 C 1.41377 * 119.93714 * 0.02562 * 7 6 5 9 9 N 1.31926 * 134.40075 * 179.97438 * 8 7 6 10 10 N 1.39921 * 109.06081 * 180.02562 * 9 8 7 11 11 H 0.97007 * 124.98221 * 179.97438 * 10 9 8 12 12 C 1.33815 * 110.03087 * 359.97438 * 10 9 8 13 13 C 1.38545 * 107.83495 * 359.97438 * 12 10 9 14 14 C 1.38220 * 119.39468 * 203.14131 * 5 3 2 15 15 C 1.46496 * 120.00297 * 180.02562 * 2 1 3 16 16 H 1.08997 * 110.64194 * 181.68814 * 15 2 1 17 17 C 1.55158 * 110.87277 * 304.93085 * 15 2 1 18 18 C 1.55133 * 101.48346 * 82.76757 * 17 15 2 19 19 N 1.47422 * 104.72143 * 37.29393 * 18 17 15 20 20 C 1.36938 * 125.64849 * 155.81646 * 19 18 17 21 21 H 1.08006 * 120.00359 * 199.59831 * 20 19 18 22 22 C 1.38818 * 119.99850 * 19.58945 * 20 19 18 23 23 N 1.31617 * 119.99564 * 29.86035 * 22 20 19 24 24 Si 1.86799 * 120.00141 * 209.85102 * 22 20 19 25 25 H 1.48495 * 109.46765 * 180.02562 * 24 22 20 26 26 H 1.48495 * 109.47007 * 300.00427 * 24 22 20 27 27 H 1.48498 * 109.47107 * 60.00511 * 24 22 20 28 28 C 1.47014 * 108.70554 * 335.55810 * 19 18 17 29 29 H 1.09006 * 109.47175 * 264.20376 * 1 2 3 30 30 H 1.09000 * 109.47426 * 24.20342 * 1 2 3 31 31 H 1.08999 * 109.47513 * 144.20485 * 1 2 3 32 32 H 1.08001 * 119.17512 * 0.02562 * 6 5 3 33 33 H 1.08003 * 120.03232 * 180.02562 * 7 6 5 34 34 H 1.07999 * 126.07843 * 180.02562 * 12 10 9 35 35 H 1.07997 * 120.32390 * 0.02562 * 14 5 3 36 36 H 1.08992 * 111.00957 * 201.00651 * 17 15 2 37 37 H 1.09002 * 111.00357 * 324.82760 * 17 15 2 38 38 H 1.09004 * 110.49922 * 278.45635 * 18 17 15 39 39 H 1.08990 * 110.34543 * 156.06084 * 18 17 15 40 40 H 0.96995 * 120.00250 * 6.25714 * 23 22 20 41 41 H 1.08996 * 109.88660 * 120.70297 * 28 19 18 42 42 H 1.09008 * 109.88407 * 241.86686 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3519 1.1690 -0.0835 5 6 1.4046 2.4428 0.1012 6 6 0.1186 2.4571 0.6802 7 6 -0.5943 3.5999 0.7964 8 6 -0.0527 4.8198 0.3306 9 7 -0.4807 6.0673 0.2984 10 7 0.5002 6.8719 -0.2916 11 1 0.4246 7.8289 -0.4311 12 6 1.5579 6.1277 -0.6350 13 6 1.2895 4.8171 -0.2749 14 6 1.9919 3.6027 -0.3679 15 6 2.1974 -1.2687 -0.0006 16 1 3.2725 -1.0916 0.0296 17 6 1.7550 -2.1630 1.1876 18 6 0.4729 -2.8236 0.6162 19 7 0.7775 -3.0646 -0.8059 20 6 0.1852 -4.0100 -1.5999 21 1 0.6695 -4.3312 -2.5103 22 6 -1.0378 -4.5558 -1.2346 23 7 -1.8950 -3.8415 -0.5366 24 14 -1.4671 -6.3039 -1.7340 25 1 -2.8196 -6.6460 -1.2253 26 1 -1.4533 -6.4132 -3.2148 27 1 -0.4697 -7.2420 -1.1591 28 6 1.8182 -2.1177 -1.2322 29 1 -0.3634 -0.1038 1.0225 30 1 -0.3634 0.9373 -0.4213 31 1 -0.3634 -0.8335 -0.6010 32 1 -0.3069 1.5322 1.0406 33 1 -1.5768 3.5808 1.2447 34 1 2.4606 6.4853 -1.1080 35 1 2.9792 3.5758 -0.8050 36 1 2.5141 -2.9104 1.4180 37 1 1.5242 -1.5600 2.0658 38 1 -0.3789 -2.1504 0.7129 39 1 0.2726 -3.7658 1.1262 40 1 -1.7125 -2.9063 -0.3551 41 1 2.6916 -2.6629 -1.5898 42 1 1.4320 -1.4732 -2.0220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033368312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:48 Heat of formation + Delta-G solvation = 95.515023 kcal Electronic energy + Delta-G solvation = -25995.749935 eV Core-core repulsion = 22364.461854 eV Total energy + Delta-G solvation = -3631.288081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.38914 -41.43187 -39.30335 -37.81868 -36.15848 -34.21945 -33.21945 -31.94679 -30.92125 -30.14006 -29.65304 -27.79209 -26.20217 -25.62495 -23.65044 -22.16950 -22.02786 -21.69731 -20.27952 -19.53315 -19.39828 -18.44938 -17.70369 -17.34706 -16.55631 -16.40746 -15.99908 -15.80783 -15.64426 -15.21325 -15.11661 -15.01546 -14.72704 -14.51455 -14.18653 -13.73152 -13.50249 -13.44207 -13.21772 -12.76618 -12.61187 -12.57763 -12.45283 -12.34781 -11.93155 -11.91229 -11.83154 -11.56552 -11.41189 -11.39319 -10.86373 -10.45275 -9.82443 -9.74042 -8.95908 -8.71173 -8.29013 -5.30937 -0.50649 0.37174 1.33283 1.60338 1.67124 1.78336 1.82848 1.86679 1.94708 2.65860 2.82009 3.16528 3.20052 3.48459 3.62410 3.64339 3.75457 3.90325 4.04539 4.12289 4.18271 4.20464 4.38964 4.43197 4.49034 4.49377 4.52834 4.58296 4.81905 4.82554 4.93508 5.00673 5.06490 5.09959 5.23905 5.29455 5.32939 5.40580 5.55182 5.71955 5.72661 6.20214 6.36797 6.38080 6.50197 6.94442 7.09043 7.72213 8.32364 9.02352 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.003103 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.378034 B = 9021.248791 C = 9643.949266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.592 5.592 3 C 0.564 3.436 4 O -0.581 6.581 5 C -0.199 4.199 6 C -0.070 4.070 7 C -0.125 4.125 8 C 0.103 3.897 9 N -0.348 5.348 10 N -0.408 5.408 11 H 0.463 0.537 12 C 0.145 3.855 13 C -0.254 4.254 14 C 0.047 3.953 15 C 0.139 3.861 16 H 0.109 0.891 17 C -0.129 4.129 18 C 0.141 3.859 19 N -0.615 5.615 20 C -0.351 4.351 21 H 0.051 0.949 22 C -0.068 4.068 23 N -0.933 5.933 24 Si 1.111 2.889 25 H -0.290 1.290 26 H -0.279 1.279 27 H -0.284 1.284 28 C 0.127 3.873 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.159 0.841 33 H 0.144 0.856 34 H 0.247 0.753 35 H 0.145 0.855 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.032 0.968 39 H 0.018 0.982 40 H 0.259 0.741 41 H 0.034 0.966 42 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.683 22.329 2.277 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.322 5.322 3 C 0.356 3.644 4 O -0.463 6.463 5 C -0.204 4.204 6 C -0.092 4.092 7 C -0.146 4.146 8 C -0.051 4.051 9 N -0.176 5.176 10 N -0.109 5.109 11 H 0.312 0.688 12 C -0.016 4.016 13 C -0.264 4.264 14 C 0.025 3.975 15 C 0.035 3.965 16 H 0.127 0.873 17 C -0.168 4.168 18 C 0.016 3.984 19 N -0.343 5.343 20 C -0.480 4.480 21 H 0.068 0.932 22 C -0.265 4.265 23 N -0.574 5.574 24 Si 0.936 3.064 25 H -0.216 1.216 26 H -0.204 1.204 27 H -0.210 1.210 28 C 0.001 3.999 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.176 0.824 33 H 0.161 0.839 34 H 0.263 0.737 35 H 0.162 0.838 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.050 0.950 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 5.099 21.892 2.622 22.631 hybrid contribution 1.462 0.803 -0.654 1.792 sum 6.561 22.695 1.968 23.706 Atomic orbital electron populations 1.22629 0.78900 1.03680 1.02270 1.47634 1.07453 1.05066 1.72096 1.18610 0.86640 0.84042 0.75143 1.90700 1.14908 1.87795 1.52938 1.19316 0.97339 0.92609 1.11107 1.21621 0.92329 0.99591 0.95678 1.19933 1.01664 0.88366 1.04672 1.21333 0.93949 0.92947 0.96862 1.77614 1.12708 1.01908 1.25359 1.46414 1.11092 1.12213 1.41136 0.68791 1.23664 0.93877 0.89253 0.94834 1.19808 0.97544 0.94931 1.14072 1.20736 0.97640 0.88733 0.90373 1.21891 0.97139 0.82483 0.95034 0.87304 1.23098 0.98093 0.98559 0.97022 1.21729 0.95360 0.97006 0.84329 1.44729 1.44553 1.38432 1.06585 1.19875 1.03241 1.17020 1.07837 0.93153 1.26978 0.90982 1.08376 1.00203 1.70891 1.34186 1.09073 1.43280 0.82908 0.75457 0.71970 0.76104 1.21556 1.20450 1.21031 1.21712 0.92114 0.90846 0.95244 0.90399 0.88137 0.92668 0.82432 0.83867 0.73693 0.83753 0.89532 0.89108 0.95019 0.96346 0.93076 0.94800 0.96814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.11 6.67 127.77 0.85 2.96 16 2 N -0.59 -19.79 2.83 -819.75 -2.32 -22.11 16 3 C 0.56 18.54 7.48 86.69 0.65 19.19 16 4 O -0.58 -21.93 15.88 -4.01 -0.06 -22.00 16 5 C -0.20 -5.43 5.53 -20.15 -0.11 -5.54 16 6 C -0.07 -1.72 7.35 22.25 0.16 -1.55 16 7 C -0.13 -2.93 10.05 22.34 0.22 -2.70 16 8 C 0.10 2.43 7.49 42.27 0.32 2.75 16 9 N -0.35 -7.47 12.69 -48.55 -0.62 -8.09 16 10 N -0.41 -4.45 7.17 -56.25 -0.40 -4.85 16 11 H 0.46 1.06 8.96 -213.43 -1.91 -0.86 16 12 C 0.14 1.38 12.09 84.46 1.02 2.40 16 13 C -0.25 -4.97 6.32 -20.26 -0.13 -5.09 16 14 C 0.05 1.07 9.63 22.84 0.22 1.29 16 15 C 0.14 5.03 3.57 46.18 0.16 5.20 16 16 H 0.11 3.89 7.00 -2.39 -0.02 3.88 16 17 C -0.13 -4.52 6.55 32.07 0.21 -4.31 16 18 C 0.14 6.33 4.58 86.93 0.40 6.73 16 19 N -0.62 -31.05 2.86 -691.56 -1.98 -33.03 16 20 C -0.35 -19.96 9.98 84.03 0.84 -19.12 16 21 H 0.05 2.91 7.98 -2.91 -0.02 2.89 16 22 C -0.07 -3.84 5.07 84.86 0.43 -3.41 16 23 N -0.93 -55.33 12.99 21.65 0.28 -55.04 16 24 Si 1.11 51.05 30.01 68.60 2.06 53.11 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 C 0.13 5.52 6.20 86.73 0.54 6.05 16 29 H 0.08 2.17 6.73 -2.38 -0.02 2.15 16 30 H 0.10 2.77 4.97 -2.39 -0.01 2.76 16 31 H 0.05 2.20 5.65 -2.39 -0.01 2.19 16 32 H 0.16 3.59 4.14 -2.91 -0.01 3.58 16 33 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.25 -0.46 8.06 -2.91 -0.02 -0.49 16 35 H 0.14 3.00 7.76 -2.91 -0.02 2.97 16 36 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.03 1.46 4.20 -2.39 -0.01 1.45 16 39 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 40 H 0.26 15.28 6.37 -92.71 -0.59 14.69 16 41 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.01 0.64 8.04 -2.38 -0.02 0.62 16 Total: -1.00 -78.39 334.73 2.10 -76.29 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -0.65 Total: 10.89 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 5.79 Total: 4.84 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -5.03 Total: -123.13 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.06 Total: -22.00 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.06 Total: 53.11 kcal Total: -78.39 2.10 -76.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033368312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.805 kcal (2) G-P(sol) polarization free energy of solvation -78.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds