Wall clock time and date at job start Fri Apr 10 2020 23:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.47167 * 135.99924 * 359.63611 * 9 7 2 11 11 C 1.52646 * 87.96647 * 206.71519 * 10 9 7 12 12 C 1.47164 * 135.99824 * 179.97438 * 9 7 2 13 13 C 1.52557 * 113.89649 * 88.17269 * 11 10 9 14 14 C 1.53348 * 109.12939 * 190.30635 * 13 11 10 15 15 N 1.46883 * 108.75089 * 307.75516 * 14 13 11 16 16 C 1.34783 * 120.46607 * 235.60832 * 15 14 13 17 17 O 1.21283 * 119.99918 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99580 * 0.02562 * 16 15 14 19 19 H 1.08997 * 115.55546 * 325.72591 * 18 16 15 20 20 C 1.53005 * 117.49435 * 111.39846 * 18 16 15 21 21 C 1.52997 * 59.99985 * 107.48826 * 20 18 16 22 22 H 1.09006 * 117.49415 * 252.50717 * 21 20 18 23 23 C 1.52997 * 117.49964 * 107.49009 * 21 20 18 24 24 F 1.39897 * 109.47046 * 231.37293 * 23 21 20 25 25 F 1.39896 * 109.47011 * 351.37476 * 23 21 20 26 26 C 1.46898 * 119.07403 * 55.63008 * 15 14 13 27 27 C 1.52554 * 114.25905 * 220.76178 * 11 10 9 28 28 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 29 29 H 1.08996 * 113.48878 * 321.40744 * 10 9 7 30 30 H 1.09000 * 113.49032 * 91.91584 * 10 9 7 31 31 H 1.09000 * 113.48735 * 268.08462 * 12 9 7 32 32 H 1.08997 * 113.48829 * 38.53340 * 12 9 7 33 33 H 1.08997 * 109.52442 * 310.20095 * 13 11 10 34 34 H 1.09001 * 109.52586 * 70.40766 * 13 11 10 35 35 H 1.09008 * 109.58936 * 187.97789 * 14 13 11 36 36 H 1.09000 * 109.59509 * 67.53867 * 14 13 11 37 37 H 1.08997 * 117.49799 * 214.98413 * 20 18 16 38 38 H 1.09003 * 117.49729 * 359.97438 * 20 18 16 39 39 H 1.09007 * 109.46868 * 111.37314 * 23 21 20 40 40 H 1.08996 * 109.59056 * 184.59354 * 26 15 14 41 41 H 1.09000 * 109.59380 * 64.13995 * 26 15 14 42 42 H 1.09000 * 109.53186 * 289.75434 * 27 11 10 43 43 H 1.08998 * 109.53201 * 49.89629 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0891 -2.7937 0.0066 11 6 0.3420 -4.0907 0.6863 12 6 1.6816 -3.8160 0.0005 13 6 0.3925 -4.0034 2.2086 14 6 1.0761 -5.2597 2.7616 15 7 0.4129 -6.4440 2.2002 16 6 -0.0975 -7.3908 3.0125 17 8 -0.6429 -8.3655 2.5398 18 6 0.0097 -7.2381 4.5079 19 1 0.9165 -6.7516 4.8671 20 6 -1.2831 -6.9864 5.2867 21 6 -0.5889 -8.3469 5.3758 22 1 -1.0602 -9.1868 4.8651 23 6 0.1314 -8.6883 6.6817 24 9 1.4369 -9.1041 6.3993 25 9 0.1698 -7.5562 7.5028 26 6 0.3141 -6.5824 0.7411 27 6 -0.3754 -5.3355 0.1736 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7189 -2.1642 0.6352 30 1 -0.5027 -2.9426 -0.9909 31 1 1.7542 -4.2456 -0.9986 32 1 2.5454 -4.0483 0.6233 33 1 0.9589 -3.1203 2.5042 34 1 -0.6213 -3.9363 2.6035 35 1 0.9910 -5.2738 3.8482 36 1 2.1278 -5.2596 2.4752 37 1 -1.2266 -6.3344 6.1583 38 1 -2.2109 -6.9308 4.7173 39 1 -0.4027 -9.4896 7.1925 40 1 -0.2730 -7.4676 0.4969 41 1 1.3128 -6.6740 0.3142 42 1 -1.4161 -5.3156 0.4970 43 1 -0.3326 -5.3582 -0.9153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035693821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:42 Heat of formation + Delta-G solvation = -52.544614 kcal Electronic energy + Delta-G solvation = -26872.230612 eV Core-core repulsion = 22783.832997 eV Total energy + Delta-G solvation = -4088.397615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.25358 -47.24348 -40.55122 -39.13303 -36.82736 -35.72467 -32.56074 -31.21346 -30.39914 -27.97851 -26.95306 -25.08935 -24.61357 -23.31816 -22.80559 -21.58927 -21.00364 -19.39720 -18.44550 -17.41265 -17.37626 -17.22856 -16.70610 -16.30869 -15.92476 -15.09336 -14.87491 -14.65754 -14.37860 -14.14282 -13.87076 -13.78354 -13.63040 -13.52594 -13.10585 -12.79080 -12.49906 -12.43814 -12.24881 -12.16132 -11.71055 -11.56940 -11.13957 -11.08628 -10.96720 -10.88075 -10.83759 -10.69692 -10.41924 -10.28066 -9.76770 -9.73537 -9.62728 -9.22239 -8.81191 -8.45490 -6.87741 -5.77852 -3.09782 2.34274 2.87498 3.24689 3.37600 3.42621 3.44511 3.50943 3.90354 4.02782 4.28130 4.44354 4.45164 4.68291 4.83474 4.93387 5.00473 5.05193 5.13330 5.32181 5.34109 5.39036 5.47302 5.57090 5.62303 5.65247 5.65995 5.82312 5.86330 5.98670 6.14775 6.26415 6.33586 6.48286 6.57967 6.61876 6.78802 6.81796 7.21304 7.34862 7.43503 7.55547 7.96787 8.13717 9.02926 9.69580 10.64516 11.39542 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.020385 B = 0.003070 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.223862 B = 9119.491830 C = 9849.142534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.217 4.217 8 H 0.080 0.920 9 N -0.608 5.608 10 C 0.167 3.833 11 C -0.116 4.116 12 C 0.127 3.873 13 C -0.094 4.094 14 C 0.106 3.894 15 N -0.597 5.597 16 C 0.545 3.455 17 O -0.550 6.550 18 C -0.170 4.170 19 H 0.131 0.869 20 C -0.124 4.124 21 C -0.196 4.196 22 H 0.145 0.855 23 C 0.293 3.707 24 F -0.201 7.201 25 F -0.203 7.203 26 C 0.115 3.885 27 C -0.113 4.113 28 H 0.253 0.747 29 H 0.069 0.931 30 H 0.023 0.977 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.173 -16.993 11.736 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.344 4.344 8 H 0.097 0.903 9 N -0.334 5.334 10 C 0.041 3.959 11 C -0.117 4.117 12 C 0.001 3.999 13 C -0.132 4.132 14 C -0.016 4.016 15 N -0.329 5.329 16 C 0.333 3.667 17 O -0.429 6.429 18 C -0.191 4.191 19 H 0.149 0.851 20 C -0.162 4.162 21 C -0.215 4.215 22 H 0.162 0.838 23 C 0.239 3.761 24 F -0.183 7.183 25 F -0.185 7.185 26 C -0.007 4.007 27 C -0.152 4.152 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.353 -17.083 11.483 20.718 hybrid contribution 0.694 1.135 -0.266 1.357 sum -1.658 -15.948 11.217 19.568 Atomic orbital electron populations 1.69829 1.04983 1.25272 1.56554 1.24772 0.95650 0.97427 1.02563 0.86145 0.78639 0.83553 0.77577 1.21683 1.21641 1.20618 1.18922 0.90067 0.81541 1.43887 0.90263 1.45570 1.02652 0.99178 1.85949 1.21969 0.88766 0.88903 0.96254 1.22035 0.98786 0.95771 0.95103 1.22403 0.94429 0.86781 0.96312 1.21417 1.00868 0.96812 0.94071 1.21931 0.96881 0.84597 0.98219 1.48012 1.56635 1.21353 1.06898 1.19421 0.77873 0.82299 0.87089 1.90663 1.44663 1.30762 1.76833 1.22277 1.00851 1.04113 0.91865 0.85122 1.23106 0.95289 0.95909 1.01848 1.23504 1.04818 0.96396 0.96771 0.83772 1.21272 0.80321 0.85348 0.89135 1.93011 1.40442 1.90385 1.94424 1.92976 1.96615 1.54749 1.74147 1.21652 1.01259 0.99287 0.78513 1.21725 0.99429 0.93618 1.00420 0.93700 0.91236 0.95896 0.95230 0.94560 0.89243 0.91997 0.89991 0.91020 0.86418 0.87041 0.86212 0.89430 0.91374 0.91836 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 11.52 55.49 0.64 -26.23 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -5.95 10.74 -15.06 -0.16 -6.11 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.61 -15.07 3.55 -184.83 -0.66 -15.73 16 10 C 0.17 3.78 6.52 -8.36 -0.05 3.73 16 11 C -0.12 -2.01 0.83 -155.16 -0.13 -2.14 16 12 C 0.13 2.48 7.63 -8.19 -0.06 2.42 16 13 C -0.09 -1.47 5.26 -26.78 -0.14 -1.62 16 14 C 0.11 1.35 6.21 -3.65 -0.02 1.33 16 15 N -0.60 -7.97 2.94 -172.62 -0.51 -8.48 16 16 C 0.55 7.39 7.48 -10.98 -0.08 7.31 16 17 O -0.55 -8.96 15.65 5.55 0.09 -8.87 16 18 C -0.17 -1.79 4.63 -91.77 -0.42 -2.21 16 19 H 0.13 1.29 6.76 -51.93 -0.35 0.94 16 20 C -0.12 -1.06 9.62 -26.73 -0.26 -1.32 16 21 C -0.20 -1.70 5.67 -90.62 -0.51 -2.22 16 22 H 0.14 1.29 7.67 -51.93 -0.40 0.89 16 23 C 0.29 2.24 5.67 37.16 0.21 2.45 16 24 F -0.20 -2.06 17.29 2.25 0.04 -2.02 16 25 F -0.20 -1.84 15.91 2.25 0.04 -1.80 16 26 C 0.11 1.55 6.35 -3.64 -0.02 1.53 16 27 C -0.11 -1.65 5.31 -26.77 -0.14 -1.79 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.07 1.76 7.12 -51.93 -0.37 1.39 16 30 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.03 0.57 8.06 -51.93 -0.42 0.16 16 32 H 0.04 0.68 7.54 -51.93 -0.39 0.28 16 33 H 0.09 1.63 7.95 -51.93 -0.41 1.22 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.87 5.60 -51.92 -0.29 0.58 16 36 H 0.07 0.91 7.60 -51.93 -0.39 0.51 16 37 H 0.12 0.88 7.22 -51.93 -0.37 0.51 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.21 6.97 -51.93 -0.36 0.85 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -32.26 350.68 -8.27 -40.53 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.26 Total: -0.55 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.90 Total: 1.05 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.52 Total: -50.43 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.07 Total: -3.82 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.26 -8.27 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035693821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.018 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds