Wall clock time and date at job start Fri Apr 10 2020 23:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47517 * 240.00276 * 3 2 1 5 5 H 1.48499 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47024 * 120.00089 * 3 2 1 7 7 C 1.37884 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99442 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47306 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47232 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47232 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47183 * 179.97438 * 12 11 10 14 14 N 1.31138 * 126.54704 * 90.25374 * 13 12 11 15 15 C 1.34500 * 105.61122 * 180.12420 * 14 13 12 16 16 C 1.50699 * 126.28739 * 179.90685 * 15 14 13 17 17 C 1.52997 * 109.46967 * 269.71113 * 16 15 14 18 18 C 1.52998 * 109.47299 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47174 * 179.97438 * 18 17 16 20 20 C 1.38235 * 119.99808 * 89.99739 * 19 18 17 21 21 C 1.38243 * 119.99602 * 179.97438 * 20 19 18 22 22 C 1.38231 * 120.00070 * 0.07188 * 21 20 19 23 23 C 1.38234 * 119.99892 * 359.90902 * 22 21 20 24 24 C 1.38230 * 119.99865 * 269.97485 * 19 18 17 25 25 N 1.29948 * 107.42383 * 359.63851 * 15 14 13 26 26 O 1.21308 * 110.25358 * 0.22722 * 25 15 14 27 27 H 0.97004 * 119.99539 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47650 * 59.99349 * 9 7 2 29 29 H 1.09004 * 109.47243 * 299.99872 * 9 7 2 30 30 H 1.09001 * 109.47075 * 59.99953 * 10 9 7 31 31 H 1.08996 * 109.46812 * 299.99888 * 10 9 7 32 32 H 1.09001 * 109.46803 * 60.00186 * 11 10 9 33 33 H 1.09004 * 109.47606 * 300.00206 * 11 10 9 34 34 H 1.08999 * 109.46483 * 59.99897 * 12 11 10 35 35 H 1.08996 * 109.46812 * 300.00287 * 12 11 10 36 36 H 1.08997 * 109.46868 * 149.70695 * 16 15 14 37 37 H 1.09001 * 109.46914 * 29.70273 * 16 15 14 38 38 H 1.09001 * 109.47585 * 59.99586 * 17 16 15 39 39 H 1.09001 * 109.46915 * 300.00064 * 17 16 15 40 40 H 1.08993 * 109.47576 * 59.99197 * 18 17 16 41 41 H 1.09001 * 109.46567 * 299.99151 * 18 17 16 42 42 H 1.08000 * 120.00616 * 359.70324 * 20 19 18 43 43 H 1.08001 * 119.99556 * 179.97438 * 21 20 19 44 44 H 1.07997 * 119.99633 * 179.97438 * 22 21 20 45 45 H 1.07999 * 119.99751 * 180.02562 * 23 22 21 46 46 H 1.08001 * 120.00371 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4801 -4.9871 -0.0033 12 6 2.4743 -6.1501 -0.0037 13 6 1.7208 -7.4552 -0.0036 14 7 1.3340 -8.1337 -1.0570 15 6 0.7017 -9.2191 -0.5764 16 6 0.0683 -10.3166 -1.3921 17 6 -1.3955 -9.9671 -1.6677 18 6 -2.0388 -11.0816 -2.4953 19 6 -3.4808 -10.7377 -2.7662 20 6 -3.8191 -10.0186 -3.8973 21 6 -5.1420 -9.7036 -4.1460 22 6 -6.1262 -10.1064 -3.2629 23 6 -5.7879 -10.8258 -2.1321 24 6 -4.4652 -11.1417 -1.8839 25 7 0.7424 -9.1506 0.7207 26 8 1.3235 -8.1447 1.0700 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5563 -0.8919 29 1 0.6240 -2.5575 0.8880 30 1 2.8718 -3.6052 0.8873 31 1 2.8718 -3.6036 -0.8927 32 1 0.8532 -5.0443 -0.8931 33 1 0.8537 -5.0454 0.8869 34 1 3.1009 -6.0926 0.8864 35 1 3.1010 -6.0920 -0.8936 36 1 0.1203 -11.2553 -0.8407 37 1 0.6012 -10.4203 -2.3373 38 1 -1.4474 -9.0283 -2.2191 39 1 -1.9283 -9.8632 -0.7225 40 1 -1.9869 -12.0201 -1.9437 41 1 -1.5061 -11.1858 -3.4406 42 1 -3.0496 -9.6991 -4.5844 43 1 -5.4063 -9.1414 -5.0295 44 1 -7.1596 -9.8599 -3.4571 45 1 -6.5569 -11.1408 -1.4423 46 1 -4.2009 -11.7035 -1.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588320754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:01:40 Heat of formation + Delta-G solvation = 31.192637 kcal Electronic energy + Delta-G solvation = -23859.686470 eV Core-core repulsion = 20329.149505 eV Total energy + Delta-G solvation = -3530.536965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.60951 -40.21049 -37.63903 -37.28780 -35.85597 -35.00900 -33.61304 -31.96840 -31.76947 -30.86475 -28.05289 -27.48523 -25.00559 -24.42007 -23.47094 -23.38767 -21.89993 -21.77510 -21.67231 -19.09148 -18.48066 -18.32910 -17.65458 -16.67580 -16.48113 -16.38083 -16.22727 -15.88916 -15.34956 -15.11229 -14.71210 -14.62376 -14.28695 -14.25781 -13.73777 -13.70515 -13.66812 -13.44671 -13.36697 -12.97737 -12.77754 -12.58765 -12.49543 -12.33312 -12.24042 -12.15552 -12.09923 -11.94282 -11.78736 -11.60230 -11.36069 -11.34577 -11.18607 -10.76781 -10.51960 -9.82729 -9.60359 -8.17281 -6.28258 0.09698 0.43777 0.49372 1.17933 1.42358 1.45423 1.53114 1.82494 2.43470 2.63207 2.87379 3.04258 3.16205 3.73620 3.81324 3.91571 4.04304 4.07012 4.12627 4.14940 4.20845 4.25215 4.34627 4.48497 4.55309 4.60488 4.64686 4.65457 4.76032 4.78477 4.81186 4.86378 4.90215 4.96007 5.07116 5.15245 5.17913 5.19838 5.27216 5.31913 5.33638 5.57419 5.58290 5.62696 5.72266 5.81126 5.90928 6.13200 6.28022 6.90474 7.12715 7.41270 8.94524 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011152 B = 0.002127 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.125869 B =13158.843553 C =15147.176133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.095 4.095 11 C -0.105 4.105 12 C -0.020 4.020 13 C 0.198 3.802 14 N -0.505 5.505 15 C 0.168 3.832 16 C -0.025 4.025 17 C -0.099 4.099 18 C -0.070 4.070 19 C -0.094 4.094 20 C -0.132 4.132 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.130 4.130 24 C -0.131 4.131 25 N -0.409 5.409 26 O 0.063 5.937 27 H 0.262 0.738 28 H -0.014 1.014 29 H -0.011 1.011 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 -26.520 -5.508 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.144 4.144 12 C -0.059 4.059 13 C -0.021 4.021 14 N -0.240 5.240 15 C -0.105 4.105 16 C -0.063 4.063 17 C -0.138 4.138 18 C -0.107 4.107 19 C -0.094 4.094 20 C -0.150 4.150 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.148 4.148 24 C -0.149 4.149 25 N -0.121 5.121 26 O 0.008 5.992 27 H 0.071 0.929 28 H 0.005 0.995 29 H 0.007 0.993 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.516 -27.112 -5.405 28.012 hybrid contribution -0.175 1.392 0.134 1.409 sum -4.691 -25.720 -5.272 26.670 Atomic orbital electron populations 1.70108 1.07959 1.27727 1.52002 1.26036 0.95741 1.03565 0.94930 0.85500 0.78221 0.78023 0.79306 1.19031 1.21258 1.18968 1.21742 0.93801 0.92284 1.50042 0.91571 1.19055 0.94696 0.93567 0.94547 1.21420 0.97910 0.92046 1.01916 1.21502 0.97762 0.93336 1.01805 1.20494 0.96164 0.81152 1.08077 1.29395 0.94994 0.97656 0.80093 1.71950 1.16559 1.05950 1.29501 1.26484 0.98372 0.97229 0.88435 1.20176 0.94945 0.92146 0.99045 1.21417 0.93063 0.99199 1.00130 1.20558 0.90565 0.98257 1.01354 1.20108 0.96233 0.98154 0.94948 1.21348 0.96972 0.98814 0.97863 1.21460 0.93250 1.00029 1.00239 1.21462 1.00336 0.98727 0.95014 1.21458 0.96843 0.98633 0.97898 1.21338 0.93044 1.00846 0.99649 1.74595 1.16634 1.04376 1.16456 1.85265 1.52460 1.25182 1.36246 0.92926 0.99546 0.99301 0.91428 0.91854 0.92997 0.92375 0.85278 0.85586 0.87244 0.86973 0.92795 0.92824 0.89048 0.89180 0.85177 0.84792 0.84611 0.84530 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.67 13.29 21.45 0.28 -57.38 16 2 C -0.01 -0.32 5.46 84.66 0.46 0.15 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 0.96 4.97 29.85 0.15 1.10 16 10 C -0.10 -3.53 5.15 30.60 0.16 -3.37 16 11 C -0.11 -3.23 5.20 30.60 0.16 -3.07 16 12 C -0.02 -0.45 5.84 29.85 0.17 -0.28 16 13 C 0.20 5.24 7.77 88.38 0.69 5.93 16 14 N -0.51 -14.19 11.55 -303.15 -3.50 -17.69 16 15 C 0.17 4.30 7.47 138.46 1.03 5.33 16 16 C -0.02 -0.42 5.84 29.85 0.17 -0.24 16 17 C -0.10 -1.73 5.18 30.59 0.16 -1.57 16 18 C -0.07 -0.91 5.34 29.85 0.16 -0.75 16 19 C -0.09 -1.59 5.13 -19.87 -0.10 -1.70 16 20 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 21 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 22 C -0.14 -2.23 10.05 22.27 0.22 -2.01 16 23 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 24 C -0.13 -2.17 9.70 22.27 0.22 -1.95 16 25 N -0.41 -11.61 12.16 -60.28 -0.73 -12.35 16 26 O 0.06 1.77 11.31 74.86 0.85 2.61 16 27 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 28 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 29 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 0.89 8.08 -2.39 -0.02 0.87 16 41 H 0.09 0.94 8.09 -2.39 -0.02 0.92 16 42 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 44 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 45 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 46 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -70.90 391.39 4.41 -66.49 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.94 Total: 10.79 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 4.55 Total: -38.47 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -3.95 Total: -87.42 kcal Atomic # 8 Polarization: 1.77 SS G_CDS: 0.85 Total: 2.61 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -70.90 4.41 -66.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588320754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.680 kcal (2) G-P(sol) polarization free energy of solvation -70.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds