Wall clock time and date at job start Fri Apr 10 2020 23:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86800 * 119.99877 * 2 1 4 4 H 1.48500 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46979 * 299.99879 * 3 2 1 6 6 H 1.48495 * 109.47363 * 60.00175 * 3 2 1 7 7 C 1.39900 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00175 * 175.56036 * 7 2 1 9 9 C 1.41160 * 119.99794 * 355.56912 * 7 2 1 10 10 C 1.40865 * 120.16068 * 214.77969 * 9 7 2 11 11 C 1.36372 * 119.82614 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.17036 * 359.97438 * 11 10 9 13 13 N 1.39245 * 119.83835 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99918 * 35.29448 * 13 12 11 15 15 O 1.21586 * 119.99623 * 355.71924 * 14 13 12 16 16 N 1.34779 * 120.00309 * 175.43480 * 14 13 12 17 17 C 1.47022 * 125.64348 * 0.03091 * 16 14 13 18 18 C 1.54324 * 107.26988 * 181.01740 * 17 16 14 19 19 C 1.55164 * 102.93861 * 22.19446 * 18 17 16 20 20 H 1.09003 * 111.00478 * 82.60867 * 19 18 17 21 21 C 1.53002 * 111.00364 * 206.42105 * 19 18 17 22 22 C 1.53780 * 113.61254 * 279.13876 * 21 19 18 23 23 C 1.53960 * 87.01989 * 220.04389 * 22 21 19 24 24 C 1.53778 * 113.61726 * 181.53114 * 21 19 18 25 25 C 1.47423 * 125.65061 * 179.72084 * 16 14 13 26 26 C 1.39479 * 120.33349 * 0.26274 * 12 11 10 27 27 C 1.36380 * 120.16613 * 359.47847 * 26 12 11 28 28 H 0.97004 * 120.00432 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.08871 * 0.03629 * 10 9 7 30 30 H 1.07998 * 119.92031 * 179.97438 * 11 10 9 31 31 H 0.97000 * 120.00345 * 215.30574 * 13 12 11 32 32 H 1.08990 * 109.88668 * 300.43579 * 17 16 14 33 33 H 1.09001 * 109.88174 * 61.44757 * 17 16 14 34 34 H 1.09000 * 110.71837 * 140.55435 * 18 17 16 35 35 H 1.08998 * 110.72620 * 263.83429 * 18 17 16 36 36 H 1.08999 * 112.84886 * 50.33412 * 21 19 18 37 37 H 1.08994 * 113.61949 * 334.56391 * 22 21 19 38 38 H 1.09009 * 113.61509 * 105.47315 * 22 21 19 39 39 H 1.08995 * 113.53847 * 270.81606 * 23 22 21 40 40 H 1.08994 * 113.74014 * 139.93946 * 23 22 21 41 41 H 1.08997 * 113.61242 * 254.53190 * 24 21 19 42 42 H 1.09001 * 113.60961 * 25.42776 * 24 21 19 43 43 H 1.09008 * 110.36428 * 274.75437 * 25 16 14 44 44 H 1.08998 * 110.36460 * 37.06795 * 25 16 14 45 45 H 1.08000 * 119.92012 * 179.74870 * 26 12 11 46 46 H 1.08000 * 120.08573 * 180.26026 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3464 0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0858 -1.2129 -0.0719 9 6 1.3057 -2.4322 0.0955 10 6 1.8649 -3.5179 0.7974 11 6 1.1804 -4.6942 0.8844 12 6 -0.0705 -4.8236 0.2812 13 7 -0.7631 -6.0280 0.3740 14 6 -0.6808 -6.7679 1.4974 15 8 0.0586 -6.4237 2.3992 16 7 -1.4224 -7.8862 1.6238 17 6 -2.3571 -8.4125 0.6184 18 6 -2.9936 -9.6887 1.2082 19 6 -2.8042 -9.4970 2.7363 20 1 -3.5896 -8.8651 3.1511 21 6 -2.7526 -10.8462 3.4560 22 6 -4.1388 -11.4587 3.7166 23 6 -3.6004 -11.8908 5.0928 24 6 -2.6033 -10.7253 4.9817 25 6 -1.4257 -8.7877 2.7902 26 6 -0.6285 -3.7546 -0.4196 27 6 0.0417 -2.5703 -0.5108 28 1 -0.4851 0.8400 0.0004 29 1 2.8332 -3.4191 1.2655 30 1 1.6080 -5.5277 1.4218 31 1 -1.3048 -6.3346 -0.3700 32 1 -3.1315 -7.6744 0.4099 33 1 -1.8187 -8.6536 -0.2981 34 1 -4.0523 -9.7441 0.9548 35 1 -2.4661 -10.5778 0.8628 36 1 -2.0464 -11.5413 3.0019 37 1 -4.9388 -10.7206 3.7729 38 1 -4.3778 -12.2942 3.0584 39 1 -3.1269 -12.8725 5.0863 40 1 -4.3207 -11.7734 5.9023 41 1 -1.6044 -10.9692 5.3433 42 1 -2.9827 -9.7861 5.3844 43 1 -0.6184 -9.5157 2.7093 44 1 -1.3300 -8.2150 3.7126 45 1 -1.5958 -3.8634 -0.8876 46 1 -0.3935 -1.7421 -1.0502 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591336053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:01:58 Heat of formation + Delta-G solvation = 11.355021 kcal Electronic energy + Delta-G solvation = -25279.309100 eV Core-core repulsion = 21747.911911 eV Total energy + Delta-G solvation = -3531.397189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.39799 -39.30158 -37.68447 -36.58418 -34.35839 -32.94002 -31.57948 -29.56039 -29.33113 -28.67177 -26.05362 -25.58662 -24.47744 -23.03550 -21.38144 -20.93905 -20.55023 -19.79379 -19.28519 -17.91474 -17.22086 -16.57226 -16.08761 -15.72981 -15.15919 -15.01887 -14.63194 -14.19499 -13.87559 -13.72402 -13.33283 -12.98681 -12.89064 -12.76493 -12.63805 -12.58356 -12.18495 -12.10217 -11.96400 -11.63980 -11.31688 -11.26147 -11.11767 -11.00550 -10.92132 -10.81419 -10.68102 -10.40067 -10.33502 -10.02044 -9.47842 -9.40208 -9.18359 -8.83560 -8.47971 -7.48101 -6.77155 -6.55868 -4.27892 2.69358 2.92170 3.12639 3.13536 3.18600 3.21010 3.71897 4.01686 4.02977 4.29621 4.31762 4.40828 4.53749 4.54881 4.76288 4.80564 4.91392 5.09557 5.10398 5.29010 5.42220 5.44163 5.46438 5.52108 5.57408 5.61017 5.67749 5.70574 5.75995 5.85191 5.91500 6.04660 6.22813 6.23052 6.31854 6.51401 6.82938 6.97922 7.11393 7.22870 7.32835 7.46886 7.71572 7.93104 8.01430 8.15080 8.36857 8.49724 8.70041 8.98481 8.99336 9.15380 10.35443 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.035339 B = 0.002251 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.137671 B =12438.147670 C =12661.671305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.068 3.932 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.097 3.903 10 C -0.203 4.203 11 C -0.087 4.087 12 C 0.025 3.975 13 N -0.665 5.665 14 C 0.713 3.287 15 O -0.575 6.575 16 N -0.643 5.643 17 C 0.098 3.902 18 C -0.122 4.122 19 C -0.092 4.092 20 H 0.085 0.915 21 C -0.098 4.098 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.139 4.139 25 C 0.134 3.866 26 C -0.124 4.124 27 C -0.140 4.140 28 H 0.276 0.724 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.391 0.609 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 -20.455 2.867 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.094 3.906 10 C -0.223 4.223 11 C -0.107 4.107 12 C -0.068 4.068 13 N -0.311 5.311 14 C 0.416 3.584 15 O -0.452 6.452 16 N -0.383 5.383 17 C -0.025 4.025 18 C -0.160 4.160 19 C -0.111 4.111 20 H 0.103 0.897 21 C -0.117 4.117 22 C -0.172 4.172 23 C -0.182 4.182 24 C -0.176 4.176 25 C 0.011 3.989 26 C -0.144 4.144 27 C -0.160 4.160 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.224 0.776 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.522 -19.941 3.530 22.378 hybrid contribution -0.091 0.636 -0.329 0.722 sum -9.613 -19.305 3.201 21.802 Atomic orbital electron populations 1.69774 1.07248 1.28454 1.38696 1.25868 0.94935 1.01109 0.92672 0.86160 0.80595 0.80960 0.78311 1.18626 1.20074 1.20053 1.19510 0.94703 0.90197 1.44825 0.90631 1.17723 0.92346 0.92046 0.88468 1.20808 1.01181 0.94919 1.05405 1.20428 0.92775 0.97953 0.99585 1.17095 0.93714 0.84981 1.11002 1.42125 1.51618 1.22014 1.15314 1.15547 0.80733 0.78988 0.83175 1.90909 1.42237 1.70990 1.41087 1.47600 1.45420 1.25594 1.19686 1.21966 0.92573 0.95834 0.92156 1.22624 1.01271 0.97051 0.95043 1.22445 0.97420 0.96055 0.95178 0.89661 1.22479 0.98023 0.95705 0.95489 1.22956 0.96665 1.00477 0.97107 1.22849 0.99108 0.98594 0.97627 1.22949 0.99861 0.99009 0.95797 1.22019 0.96149 0.91594 0.89174 1.20288 0.98357 0.93050 1.02726 1.21173 0.97298 0.95421 1.02111 0.91308 0.88622 0.87375 0.77580 0.91777 0.91844 0.90150 0.90535 0.89000 0.90076 0.91577 0.90348 0.91569 0.91348 0.89903 0.92016 0.90535 0.89215 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.63 10.59 55.55 0.59 -21.04 16 2 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 19.42 29.56 -169.99 -5.03 14.40 16 4 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.46 -12.59 9.02 -37.85 -0.34 -12.93 16 8 H 0.08 1.99 7.85 -52.49 -0.41 1.57 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 10 C -0.20 -5.32 9.74 -39.26 -0.38 -5.70 16 11 C -0.09 -2.19 8.61 -39.79 -0.34 -2.53 16 12 C 0.02 0.57 6.31 -83.57 -0.53 0.05 16 13 N -0.67 -12.63 5.26 -14.10 -0.07 -12.70 16 14 C 0.71 13.80 8.32 -86.92 -0.72 13.07 16 15 O -0.58 -13.59 14.01 5.29 0.07 -13.51 16 16 N -0.64 -9.19 3.32 -176.11 -0.59 -9.78 16 17 C 0.10 0.99 6.15 -3.06 -0.02 0.97 16 18 C -0.12 -0.90 6.42 -24.89 -0.16 -1.06 16 19 C -0.09 -0.77 2.72 -88.35 -0.24 -1.01 16 20 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 21 C -0.10 -0.67 3.07 -89.81 -0.28 -0.95 16 22 C -0.13 -0.81 7.65 -25.82 -0.20 -1.01 16 23 C -0.14 -0.88 8.09 -25.82 -0.21 -1.09 16 24 C -0.14 -0.99 7.45 -25.92 -0.19 -1.18 16 25 C 0.13 1.60 6.19 -2.42 -0.01 1.59 16 26 C -0.12 -2.91 9.90 -39.79 -0.39 -3.30 16 27 C -0.14 -3.69 8.62 -39.26 -0.34 -4.02 16 28 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 29 H 0.10 2.38 8.06 -52.49 -0.42 1.95 16 30 H 0.11 2.71 6.22 -52.49 -0.33 2.39 16 31 H 0.39 5.99 7.81 -40.82 -0.32 5.67 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 43 H 0.06 0.71 8.04 -51.92 -0.42 0.30 16 44 H 0.08 1.05 8.03 -51.93 -0.42 0.63 16 45 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 46 H 0.13 3.56 6.13 -52.49 -0.32 3.24 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -31.64 369.26 -11.76 -43.40 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -7.25 Total: 9.04 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -5.05 Total: -15.36 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.07 Total: -43.52 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.07 Total: -13.51 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.64 -11.76 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591336053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.750 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds