Wall clock time and date at job start Fri Apr 10 2020 23:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86800 * 119.99877 * 2 1 4 4 H 1.48500 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46979 * 299.99879 * 3 2 1 6 6 H 1.48495 * 109.47363 * 60.00175 * 3 2 1 7 7 C 1.39900 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00175 * 175.56036 * 7 2 1 9 9 C 1.41160 * 119.99794 * 355.56912 * 7 2 1 10 10 C 1.40865 * 120.16068 * 214.77969 * 9 7 2 11 11 C 1.36372 * 119.82614 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.17036 * 359.97438 * 11 10 9 13 13 N 1.39245 * 119.83835 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99918 * 35.29448 * 13 12 11 15 15 O 1.21586 * 119.99623 * 355.71924 * 14 13 12 16 16 N 1.34779 * 120.00309 * 175.43480 * 14 13 12 17 17 C 1.47022 * 125.64348 * 0.03091 * 16 14 13 18 18 C 1.54324 * 107.26988 * 181.01740 * 17 16 14 19 19 C 1.55164 * 102.93861 * 22.19446 * 18 17 16 20 20 H 1.09003 * 111.00478 * 82.60867 * 19 18 17 21 21 C 1.53002 * 111.00364 * 206.42105 * 19 18 17 22 22 C 1.53780 * 113.61254 * 279.13876 * 21 19 18 23 23 C 1.53960 * 87.01989 * 220.04389 * 22 21 19 24 24 C 1.53778 * 113.61726 * 181.53114 * 21 19 18 25 25 C 1.47423 * 125.65061 * 179.72084 * 16 14 13 26 26 C 1.39479 * 120.33349 * 0.26274 * 12 11 10 27 27 C 1.36380 * 120.16613 * 359.47847 * 26 12 11 28 28 H 0.97004 * 120.00432 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.08871 * 0.03629 * 10 9 7 30 30 H 1.07998 * 119.92031 * 179.97438 * 11 10 9 31 31 H 0.97000 * 120.00345 * 215.30574 * 13 12 11 32 32 H 1.08990 * 109.88668 * 300.43579 * 17 16 14 33 33 H 1.09001 * 109.88174 * 61.44757 * 17 16 14 34 34 H 1.09000 * 110.71837 * 140.55435 * 18 17 16 35 35 H 1.08998 * 110.72620 * 263.83429 * 18 17 16 36 36 H 1.08999 * 112.84886 * 50.33412 * 21 19 18 37 37 H 1.08994 * 113.61949 * 334.56391 * 22 21 19 38 38 H 1.09009 * 113.61509 * 105.47315 * 22 21 19 39 39 H 1.08995 * 113.53847 * 270.81606 * 23 22 21 40 40 H 1.08994 * 113.74014 * 139.93946 * 23 22 21 41 41 H 1.08997 * 113.61242 * 254.53190 * 24 21 19 42 42 H 1.09001 * 113.60961 * 25.42776 * 24 21 19 43 43 H 1.09008 * 110.36428 * 274.75437 * 25 16 14 44 44 H 1.08998 * 110.36460 * 37.06795 * 25 16 14 45 45 H 1.08000 * 119.92012 * 179.74870 * 26 12 11 46 46 H 1.08000 * 120.08573 * 180.26026 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3464 0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0858 -1.2129 -0.0719 9 6 1.3057 -2.4322 0.0955 10 6 1.8649 -3.5179 0.7974 11 6 1.1804 -4.6942 0.8844 12 6 -0.0705 -4.8236 0.2812 13 7 -0.7631 -6.0280 0.3740 14 6 -0.6808 -6.7679 1.4974 15 8 0.0586 -6.4237 2.3992 16 7 -1.4224 -7.8862 1.6238 17 6 -2.3571 -8.4125 0.6184 18 6 -2.9936 -9.6887 1.2082 19 6 -2.8042 -9.4970 2.7363 20 1 -3.5896 -8.8651 3.1511 21 6 -2.7526 -10.8462 3.4560 22 6 -4.1388 -11.4587 3.7166 23 6 -3.6004 -11.8908 5.0928 24 6 -2.6033 -10.7253 4.9817 25 6 -1.4257 -8.7877 2.7902 26 6 -0.6285 -3.7546 -0.4196 27 6 0.0417 -2.5703 -0.5108 28 1 -0.4851 0.8400 0.0004 29 1 2.8332 -3.4191 1.2655 30 1 1.6080 -5.5277 1.4218 31 1 -1.3048 -6.3346 -0.3700 32 1 -3.1315 -7.6744 0.4099 33 1 -1.8187 -8.6536 -0.2981 34 1 -4.0523 -9.7441 0.9548 35 1 -2.4661 -10.5778 0.8628 36 1 -2.0464 -11.5413 3.0019 37 1 -4.9388 -10.7206 3.7729 38 1 -4.3778 -12.2942 3.0584 39 1 -3.1269 -12.8725 5.0863 40 1 -4.3207 -11.7734 5.9023 41 1 -1.6044 -10.9692 5.3433 42 1 -2.9827 -9.7861 5.3844 43 1 -0.6184 -9.5157 2.7093 44 1 -1.3300 -8.2150 3.7126 45 1 -1.5958 -3.8634 -0.8876 46 1 -0.3935 -1.7421 -1.0502 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591336053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:01:58 Heat of formation + Delta-G solvation = -5.126067 kcal Electronic energy + Delta-G solvation = -25280.023773 eV Core-core repulsion = 21747.911911 eV Total energy + Delta-G solvation = -3532.111862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65787 -40.29727 -39.21067 -37.82060 -36.16142 -34.75018 -32.70089 -31.47693 -30.58542 -30.13671 -27.19419 -26.42969 -25.73767 -24.08863 -23.18641 -22.53165 -21.51698 -20.76512 -20.33115 -19.37231 -19.11452 -18.02353 -17.19568 -17.02283 -16.38326 -16.34931 -15.99942 -15.62704 -15.10627 -14.81513 -14.61013 -14.46783 -14.11162 -13.98752 -13.96383 -13.56825 -13.36871 -13.24491 -13.20529 -12.90584 -12.88326 -12.73568 -12.71774 -12.46843 -11.91453 -11.80591 -11.64462 -11.39935 -11.35501 -11.26296 -11.06098 -10.96018 -10.87269 -10.67611 -9.68701 -9.46960 -8.68991 -8.49522 -6.31972 0.83157 1.13682 1.39748 1.46127 1.55149 1.62595 2.14789 2.25222 2.81146 3.06565 3.40103 3.62653 3.68419 3.74783 3.92120 4.00469 4.21022 4.23610 4.33546 4.38433 4.41639 4.52131 4.61097 4.65196 4.82252 4.90100 4.91494 4.94665 4.95616 5.00839 5.07018 5.12290 5.14339 5.15165 5.20347 5.26431 5.31143 5.41940 5.44058 5.48368 5.68688 5.69891 5.84050 6.04132 6.12799 6.21323 6.39395 6.68419 6.97068 7.00156 7.01362 7.59470 8.43573 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.035339 B = 0.002251 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.137671 B =12438.147670 C =12661.671305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.026 3.974 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.270 1.270 7 C -0.497 4.497 8 H 0.072 0.928 9 C 0.065 3.935 10 C -0.219 4.219 11 C -0.099 4.099 12 C 0.040 3.960 13 N -0.656 5.656 14 C 0.706 3.294 15 O -0.626 6.626 16 N -0.637 5.637 17 C 0.087 3.913 18 C -0.110 4.110 19 C -0.079 4.079 20 H 0.082 0.918 21 C -0.094 4.094 22 C -0.127 4.127 23 C -0.142 4.142 24 C -0.148 4.148 25 C 0.127 3.873 26 C -0.119 4.119 27 C -0.156 4.156 28 H 0.284 0.716 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.412 0.588 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.124 0.876 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.816 -22.009 2.014 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.195 1.195 7 C -0.528 4.528 8 H 0.090 0.910 9 C 0.063 3.937 10 C -0.239 4.239 11 C -0.119 4.119 12 C -0.054 4.054 13 N -0.304 5.304 14 C 0.409 3.591 15 O -0.507 6.507 16 N -0.375 5.375 17 C -0.035 4.035 18 C -0.148 4.148 19 C -0.099 4.099 20 H 0.100 0.900 21 C -0.113 4.113 22 C -0.164 4.164 23 C -0.180 4.180 24 C -0.186 4.186 25 C 0.004 3.996 26 C -0.140 4.140 27 C -0.176 4.176 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.248 0.752 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.142 0.858 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.473 -21.577 2.649 24.580 hybrid contribution 0.425 0.944 -0.012 1.036 sum -11.047 -20.632 2.637 23.552 Atomic orbital electron populations 1.69830 1.08559 1.29869 1.38772 1.26751 0.95848 1.04331 0.91624 0.85041 0.79027 0.76074 0.78784 1.18441 1.18639 1.19486 1.19729 0.94804 0.91277 1.46956 0.90961 1.18040 0.93443 0.92694 0.89534 1.20922 1.01590 0.95424 1.05932 1.20507 0.93800 0.97475 1.00109 1.17122 0.93005 0.86366 1.08948 1.41886 1.51472 1.20757 1.16299 1.15746 0.80836 0.80037 0.82506 1.90873 1.44536 1.72650 1.42662 1.47635 1.44503 1.23994 1.21394 1.22344 0.92133 0.97275 0.91706 1.22648 1.02727 0.96026 0.93370 1.22371 0.94637 0.96315 0.96551 0.89999 1.22479 0.99105 0.94904 0.94789 1.22923 0.95833 1.00719 0.96953 1.22858 0.98735 0.98364 0.98000 1.22993 0.99982 0.99233 0.96381 1.22227 0.98881 0.91095 0.87391 1.20518 0.99324 0.91944 1.02204 1.21169 0.97432 0.96304 1.02726 0.90496 0.88612 0.87809 0.75152 0.90889 0.90435 0.87671 0.89058 0.88243 0.89963 0.90297 0.89632 0.91429 0.91896 0.90851 0.91575 0.93072 0.85764 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.35 10.59 21.82 0.23 -45.12 16 2 C 0.03 1.36 5.42 85.24 0.46 1.83 16 3 Si 0.99 40.05 29.56 68.60 2.03 42.08 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.50 -28.03 9.02 23.39 0.21 -27.82 16 8 H 0.07 3.95 7.85 -2.91 -0.02 3.93 16 9 C 0.07 3.72 5.55 -21.28 -0.12 3.60 16 10 C -0.22 -11.93 9.74 22.48 0.22 -11.71 16 11 C -0.10 -5.07 8.61 22.13 0.19 -4.88 16 12 C 0.04 1.84 6.31 38.56 0.24 2.08 16 13 N -0.66 -24.18 5.26 -316.78 -1.67 -25.85 16 14 C 0.71 27.12 8.32 179.05 1.49 28.61 16 15 O -0.63 -30.33 14.01 -3.99 -0.06 -30.38 16 16 N -0.64 -17.41 3.32 -829.34 -2.76 -20.17 16 17 C 0.09 1.48 6.15 86.73 0.53 2.01 16 18 C -0.11 -1.20 6.42 31.79 0.20 -0.99 16 19 C -0.08 -1.15 2.72 -9.32 -0.03 -1.17 16 20 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 21 C -0.09 -1.07 3.07 -10.27 -0.03 -1.10 16 22 C -0.13 -1.15 7.65 31.18 0.24 -0.91 16 23 C -0.14 -1.46 8.09 31.18 0.25 -1.20 16 24 C -0.15 -1.97 7.45 31.12 0.23 -1.73 16 25 C 0.13 2.95 6.19 86.93 0.54 3.49 16 26 C -0.12 -5.56 9.90 22.14 0.22 -5.35 16 27 C -0.16 -8.39 8.62 22.48 0.19 -8.19 16 28 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 29 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 30 H 0.10 5.40 6.22 -2.91 -0.02 5.38 16 31 H 0.41 11.62 7.81 -92.71 -0.72 10.90 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.79 8.04 -2.39 -0.02 0.77 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 38 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 43 H 0.07 1.48 8.04 -2.38 -0.02 1.46 16 44 H 0.05 1.44 8.03 -2.39 -0.02 1.43 16 45 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 46 H 0.12 6.70 6.13 -2.91 -0.02 6.69 16 Total: -1.00 -71.47 369.26 3.08 -68.39 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.25 Total: 34.50 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 5.05 Total: -23.45 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -4.19 Total: -91.13 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.06 Total: -30.38 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -71.47 3.08 -68.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591336053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.259 kcal (2) G-P(sol) polarization free energy of solvation -71.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds