Wall clock time and date at job start Fri Apr 10 2020 23:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00368 * 2 1 4 4 H 1.48500 * 109.47013 * 274.66553 * 3 2 1 5 5 H 1.48499 * 109.46799 * 34.66317 * 3 2 1 6 6 H 1.48502 * 109.47283 * 154.66744 * 3 2 1 7 7 C 1.39949 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00651 * 162.24237 * 7 2 1 9 9 C 1.41396 * 119.99865 * 342.24322 * 7 2 1 10 10 C 1.40724 * 120.24302 * 335.27599 * 9 7 2 11 11 C 1.37614 * 119.74053 * 179.97438 * 10 9 7 12 12 C 1.38632 * 120.25564 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.75290 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.47098 * 89.99744 * 13 12 11 15 15 C 1.34781 * 119.99831 * 180.02562 * 14 13 12 16 16 O 1.21275 * 119.99898 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99482 * 179.97438 * 15 14 13 18 18 C 1.54164 * 111.79640 * 61.34510 * 17 15 14 19 19 C 1.56418 * 103.57785 * 100.13495 * 18 17 15 20 20 C 1.54838 * 103.22955 * 37.29020 * 19 18 17 21 21 C 1.54165 * 104.32595 * 322.23023 * 20 19 18 22 22 H 1.08999 * 112.50975 * 260.85842 * 21 20 19 23 23 C 1.54317 * 108.86207 * 136.32314 * 21 20 19 24 24 N 1.48527 * 104.67565 * 222.51378 * 23 21 20 25 25 C 1.48537 * 104.21141 * 39.63597 * 24 23 21 26 26 C 1.38636 * 120.49665 * 359.97438 * 12 11 10 27 27 C 1.37616 * 120.25211 * 359.97438 * 26 12 11 28 28 H 0.97004 * 119.99816 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.12575 * 0.03875 * 10 9 7 30 30 H 1.08009 * 119.86913 * 180.29211 * 11 10 9 31 31 H 1.08997 * 109.47292 * 209.99246 * 13 12 11 32 32 H 1.09005 * 109.47215 * 330.00166 * 13 12 11 33 33 H 0.96997 * 119.99891 * 359.97438 * 14 13 12 34 34 H 1.09004 * 110.45639 * 217.41158 * 18 17 15 35 35 H 1.08994 * 110.46395 * 339.99065 * 18 17 15 36 36 H 1.09001 * 110.16648 * 278.97808 * 19 18 17 37 37 H 1.09000 * 111.03229 * 156.00863 * 19 18 17 38 38 H 1.09004 * 110.46319 * 203.52149 * 20 19 18 39 39 H 1.09000 * 110.46594 * 80.94568 * 20 19 18 40 40 H 1.09002 * 110.39561 * 103.71172 * 23 21 20 41 41 H 1.09002 * 110.49551 * 341.36470 * 23 21 20 42 42 H 1.00904 * 110.99912 * 280.08916 * 24 23 21 43 43 H 1.08997 * 110.39542 * 201.56372 * 25 24 23 44 44 H 1.09002 * 110.38982 * 79.16130 * 25 24 23 45 45 H 1.08004 * 119.87515 * 180.02562 * 26 12 11 46 46 H 1.07998 * 120.12971 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4925 2.6221 0.7963 6 1 3.5857 1.4136 0.5991 7 6 2.0080 -1.2120 -0.0005 8 1 3.0493 -1.2343 -0.2858 9 6 1.3515 -2.4075 0.3724 10 6 0.2232 -2.3642 1.2122 11 6 -0.4081 -3.5341 1.5683 12 6 0.0637 -4.7519 1.1033 13 6 -0.6359 -6.0260 1.5008 14 7 -1.6825 -6.3339 0.5229 15 6 -2.4442 -7.4353 0.6753 16 8 -2.2630 -8.1717 1.6218 17 6 -3.5211 -7.7517 -0.3303 18 6 -2.9400 -7.9716 -1.7412 19 6 -2.8915 -9.5289 -1.8797 20 6 -4.1807 -9.9893 -1.1562 21 6 -4.3050 -9.0334 0.0469 22 1 -3.9374 -9.4771 0.9722 23 6 -5.7741 -8.5783 0.1729 24 7 -5.6939 -7.1245 0.4662 25 6 -4.5878 -6.6387 -0.3980 26 6 1.1744 -4.8064 0.2754 27 6 1.8209 -3.6492 -0.0944 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1465 -1.4166 1.5751 30 1 -1.2771 -3.5029 2.2089 31 1 0.0853 -6.8426 1.5302 32 1 -1.0848 -5.9018 2.4863 33 1 -1.8276 -5.7448 -0.2339 34 1 -3.6077 -7.5580 -2.4970 35 1 -1.9497 -7.5230 -1.8196 36 1 -2.0064 -9.9233 -1.3805 37 1 -2.9083 -9.8292 -2.9275 38 1 -4.0791 -11.0197 -0.8153 39 1 -5.0438 -9.8881 -1.8141 40 1 -6.2660 -9.1044 0.9911 41 1 -6.3078 -8.7484 -0.7622 42 1 -5.4889 -6.9631 1.4409 43 1 -4.1856 -5.7029 -0.0099 44 1 -4.9358 -6.5078 -1.4226 45 1 1.5332 -5.7606 -0.0813 46 1 2.6858 -3.6939 -0.7397 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592568191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:01 Heat of formation + Delta-G solvation = -48.439404 kcal Electronic energy + Delta-G solvation = -25955.183105 eV Core-core repulsion = 22421.193036 eV Total energy + Delta-G solvation = -3533.990070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.95527 -39.80406 -39.02447 -36.35296 -35.44730 -35.13962 -32.56322 -31.42662 -31.14605 -29.27693 -28.34317 -26.55093 -25.53892 -23.72618 -22.92566 -22.20981 -21.86230 -21.50968 -19.86091 -19.25390 -18.50315 -17.31084 -17.21532 -16.84532 -16.49607 -15.98356 -15.82958 -15.69132 -15.47359 -15.11297 -15.05365 -14.59552 -14.21723 -13.85471 -13.64813 -13.51285 -13.44426 -13.31442 -12.87794 -12.83786 -12.72210 -12.58768 -12.52767 -12.15071 -12.09434 -12.05940 -11.85065 -11.58005 -11.52186 -11.43870 -11.31839 -11.07801 -10.80819 -10.08323 -9.67069 -9.41668 -9.29811 -8.68294 -6.38125 0.82544 1.11507 1.38352 1.45284 1.53106 1.56848 2.18595 2.27766 2.75220 3.18702 3.24429 3.57445 3.72229 3.83967 3.97227 4.13556 4.15353 4.26582 4.28513 4.36257 4.39655 4.44078 4.48664 4.60758 4.62188 4.73123 4.76368 4.89651 4.94403 4.98605 5.02347 5.02458 5.13039 5.13209 5.18791 5.25006 5.32658 5.39642 5.42294 5.47675 5.64182 5.66417 5.88849 6.06919 6.17541 6.22988 6.34148 6.57872 6.65986 6.90343 6.98671 7.20101 8.28241 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023178 B = 0.002764 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.749692 B =10125.996732 C =10428.784428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.087 3.913 10 C -0.190 4.190 11 C -0.082 4.082 12 C -0.228 4.228 13 C 0.194 3.806 14 N -0.710 5.710 15 C 0.523 3.477 16 O -0.586 6.586 17 C -0.114 4.114 18 C -0.108 4.108 19 C -0.123 4.123 20 C -0.107 4.107 21 C -0.112 4.112 22 H 0.073 0.927 23 C 0.049 3.951 24 N -0.674 5.674 25 C 0.055 3.945 26 C -0.067 4.067 27 C -0.243 4.243 28 H 0.289 0.711 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.407 0.593 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.334 0.666 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.114 0.886 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.781 -12.805 -4.526 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.525 4.525 8 H 0.094 0.906 9 C 0.085 3.915 10 C -0.210 4.210 11 C -0.101 4.101 12 C -0.230 4.230 13 C 0.071 3.929 14 N -0.360 5.360 15 C 0.310 3.690 16 O -0.466 6.466 17 C -0.119 4.119 18 C -0.146 4.146 19 C -0.161 4.161 20 C -0.144 4.144 21 C -0.132 4.132 22 H 0.092 0.908 23 C -0.081 4.081 24 N -0.299 5.299 25 C -0.075 4.075 26 C -0.086 4.086 27 C -0.262 4.262 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.242 0.758 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.149 0.851 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.132 0.868 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.468 -12.907 -4.256 17.154 hybrid contribution 1.482 0.894 0.452 1.789 sum -8.985 -12.012 -3.804 15.476 Atomic orbital electron populations 1.69856 1.08924 1.30707 1.34789 1.26735 0.95492 1.04448 0.91172 0.85231 0.79216 0.76113 0.79441 1.18632 1.19062 1.18395 1.19890 0.98398 0.92535 1.41699 0.90566 1.17995 0.91636 0.93074 0.88813 1.21246 1.00376 0.96989 1.02352 1.20727 0.98180 0.92371 0.98782 1.19171 1.01481 0.93127 1.09217 1.19734 0.88411 0.93762 0.90973 1.46334 1.35084 1.25719 1.28860 1.20795 0.82275 0.79978 0.85950 1.90622 1.71299 1.50387 1.34326 1.22726 0.94788 0.98805 0.95582 1.22767 1.01413 0.97568 0.92843 1.22783 0.97651 0.94197 1.01423 1.22380 0.98440 0.98355 0.95267 1.23039 0.95977 0.94257 0.99974 0.90839 1.23270 0.94167 0.87397 1.03217 1.63308 1.42404 1.14023 1.10130 1.23278 0.88236 0.95488 1.00538 1.20655 0.94793 0.96894 0.96259 1.21156 1.04570 0.93012 1.07467 0.89983 0.88146 0.87931 0.92343 0.92751 0.75751 0.88192 0.91686 0.93419 0.89255 0.91134 0.89109 0.90283 0.88342 0.85120 0.91387 0.87305 0.86814 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.14 10.97 21.83 0.24 -40.90 16 2 C 0.04 1.83 5.14 85.26 0.44 2.26 16 3 Si 0.98 36.94 29.59 68.60 2.03 38.97 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 6 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.50 -25.93 9.05 23.46 0.21 -25.72 16 8 H 0.08 3.85 7.91 -2.91 -0.02 3.83 16 9 C 0.09 4.54 5.57 -21.29 -0.12 4.42 16 10 C -0.19 -9.60 8.70 22.73 0.20 -9.40 16 11 C -0.08 -3.58 9.67 22.22 0.21 -3.37 16 12 C -0.23 -9.07 5.27 -19.68 -0.10 -9.17 16 13 C 0.19 6.68 5.79 85.63 0.50 7.17 16 14 N -0.71 -21.32 5.06 -466.79 -2.36 -23.69 16 15 C 0.52 15.56 6.52 87.66 0.57 16.13 16 16 O -0.59 -21.67 15.48 -3.01 -0.05 -21.72 16 17 C -0.11 -2.49 0.78 -51.44 -0.04 -2.53 16 18 C -0.11 -1.95 6.09 32.18 0.20 -1.76 16 19 C -0.12 -2.05 6.93 32.41 0.22 -1.82 16 20 C -0.11 -1.63 6.38 31.62 0.20 -1.43 16 21 C -0.11 -2.26 3.48 -9.30 -0.03 -2.29 16 22 H 0.07 1.92 6.77 -2.39 -0.02 1.91 16 23 C 0.05 0.84 7.00 86.44 0.60 1.44 16 24 N -0.67 -13.81 7.62 -501.22 -3.82 -17.63 16 25 C 0.05 1.11 6.58 86.43 0.57 1.68 16 26 C -0.07 -2.76 9.67 22.22 0.21 -2.55 16 27 C -0.24 -11.35 9.80 22.73 0.22 -11.13 16 28 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 29 H 0.10 5.35 6.18 -2.91 -0.02 5.33 16 30 H 0.10 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 32 H 0.05 1.93 8.08 -2.38 -0.02 1.91 16 33 H 0.41 11.47 8.33 -92.71 -0.77 10.69 16 34 H 0.10 1.40 7.19 -2.38 -0.02 1.38 16 35 H 0.06 1.32 7.65 -2.39 -0.02 1.30 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.09 1.04 7.18 -2.39 -0.02 1.02 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.39 7.19 -2.39 -0.02 1.37 16 42 H 0.33 7.35 8.92 -89.69 -0.80 6.55 16 43 H 0.07 1.53 7.60 -2.39 -0.02 1.51 16 44 H 0.11 1.84 7.20 -2.39 -0.02 1.82 16 45 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 46 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -59.44 365.78 -0.46 -59.90 By element: Atomic # 1 Polarization: 43.69 SS G_CDS: -0.57 Total: 43.12 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 4.07 Total: -38.06 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -5.94 Total: -82.22 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.72 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Total: -59.44 -0.46 -59.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592568191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.463 kcal (2) G-P(sol) polarization free energy of solvation -59.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds