Wall clock time and date at job start Fri Apr 10 2020 23:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00035 * 2 1 4 4 H 1.48493 * 109.47138 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.46941 * 240.00066 * 3 2 1 6 6 H 1.48500 * 109.46925 * 120.00209 * 3 2 1 7 7 C 1.37881 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00040 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00202 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47353 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47451 * 54.99662 * 10 9 7 12 12 N 1.46509 * 109.47167 * 295.00120 * 10 9 7 13 13 C 1.34773 * 120.00165 * 154.99733 * 12 10 9 14 14 O 1.21592 * 119.99968 * 355.07816 * 13 12 10 15 15 N 1.34773 * 119.99737 * 175.07400 * 13 12 10 16 16 C 1.45318 * 118.81730 * 185.10435 * 15 13 12 17 17 C 1.51876 * 111.89322 * 236.46066 * 16 15 13 18 18 C 1.52098 * 112.14593 * 317.70741 * 17 16 15 19 19 H 1.08996 * 115.19614 * 230.96001 * 18 17 16 20 20 C 1.53820 * 115.32515 * 90.26237 * 18 17 16 21 21 C 1.51967 * 121.29981 * 21.74331 * 18 17 16 22 22 H 1.09001 * 115.76871 * 208.72329 * 21 18 17 23 23 C 1.45518 * 118.82217 * 5.36666 * 15 13 12 24 24 C 1.50706 * 109.47386 * 175.00244 * 10 9 7 25 25 C 1.38236 * 119.99907 * 79.72362 * 24 10 9 26 26 C 1.38230 * 119.99890 * 179.81088 * 25 24 10 27 27 C 1.38239 * 119.99752 * 0.39621 * 26 25 24 28 28 C 1.38236 * 120.00204 * 359.86018 * 27 26 25 29 29 C 1.38233 * 119.99960 * 359.94916 * 28 27 26 30 30 H 0.97001 * 119.99782 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47066 * 300.00454 * 9 7 2 32 32 H 1.09003 * 109.47159 * 59.99894 * 9 7 2 33 33 H 0.97003 * 119.99690 * 334.99975 * 12 10 9 34 34 H 1.09003 * 108.97465 * 356.57063 * 16 15 13 35 35 H 1.09001 * 108.97815 * 115.27626 * 16 15 13 36 36 H 1.09000 * 108.04834 * 197.70168 * 17 16 15 37 37 H 1.08996 * 110.03892 * 79.06470 * 17 16 15 38 38 H 1.09003 * 117.53768 * 139.74598 * 20 18 17 39 39 H 1.08998 * 117.54255 * 354.46738 * 20 18 17 40 40 H 1.08997 * 109.12508 * 260.55165 * 23 15 13 41 41 H 1.09004 * 109.11544 * 19.62881 * 23 15 13 42 42 H 1.08006 * 119.99805 * 359.97438 * 25 24 10 43 43 H 1.07997 * 120.00333 * 180.23220 * 26 25 24 44 44 H 1.08004 * 119.99696 * 179.82930 * 27 26 25 45 45 H 1.07994 * 120.00092 * 179.97438 * 28 27 26 46 46 H 1.07993 * 120.00385 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6963 -1.2126 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5553 0.8412 12 7 3.0063 -3.6540 -1.2524 13 6 4.2310 -4.2146 -1.3002 14 8 4.7416 -4.6471 -0.2850 15 7 4.8895 -4.2958 -2.4732 16 6 6.1576 -5.0042 -2.5170 17 6 7.2786 -4.1266 -3.0459 18 6 6.8397 -3.2935 -4.2403 19 1 7.4913 -3.3527 -5.1120 20 6 6.2607 -1.9096 -3.9001 21 6 5.3724 -2.9914 -4.4958 22 1 5.0941 -2.8413 -5.5389 23 6 4.3081 -3.6662 -3.6492 24 6 1.4958 -4.9638 0.1232 25 6 0.8894 -5.5204 -0.9873 26 6 0.2053 -6.7163 -0.8746 27 6 0.1208 -7.3514 0.3504 28 6 0.7227 -6.7920 1.4620 29 6 1.4101 -5.5981 1.3485 30 1 -0.4850 -0.8401 -0.0004 31 1 0.6247 -2.5571 0.8897 32 1 0.6240 -2.5568 -0.8903 33 1 2.6287 -3.2450 -2.0469 34 1 6.4167 -5.3297 -1.5095 35 1 6.0517 -5.8816 -3.1550 36 1 8.1000 -4.7750 -3.3508 37 1 7.6320 -3.4584 -2.2605 38 1 6.5387 -1.0749 -4.5437 39 1 6.1214 -1.6665 -2.8468 40 1 3.8037 -4.4246 -4.2479 41 1 3.5791 -2.9207 -3.3314 42 1 0.9523 -5.0223 -1.9435 43 1 -0.2653 -7.1532 -1.7429 44 1 -0.4161 -8.2844 0.4390 45 1 0.6563 -7.2879 2.4191 46 1 1.8800 -5.1608 2.2169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595568367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:08 Heat of formation + Delta-G solvation = 1.122030 kcal Electronic energy + Delta-G solvation = -26792.553260 eV Core-core repulsion = 23260.712335 eV Total energy + Delta-G solvation = -3531.840925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86444 -40.37498 -39.27681 -37.06989 -35.52195 -35.00266 -33.21801 -31.91974 -31.63800 -30.25670 -27.83838 -26.49086 -25.10339 -24.00695 -23.44839 -22.51790 -22.22767 -21.30253 -19.90592 -19.09116 -18.68694 -17.86296 -17.47413 -17.09061 -16.40198 -16.12424 -15.82932 -15.71836 -15.46578 -15.24650 -15.04848 -14.90453 -14.31987 -14.29777 -14.07383 -13.89696 -13.69262 -13.61025 -13.36285 -13.14631 -12.78165 -12.52685 -12.51187 -12.24946 -12.07425 -11.95516 -11.80198 -11.71971 -11.29446 -10.88887 -10.86389 -10.81493 -10.57988 -10.14414 -9.82486 -9.61267 -9.47522 -8.68195 -6.39016 0.43710 0.49473 1.49344 1.55853 1.67803 1.76238 2.11339 2.52198 2.72614 2.83498 3.01380 3.16528 3.58635 3.84624 3.88085 3.89675 3.95853 4.09809 4.14504 4.20084 4.25906 4.29522 4.31216 4.41382 4.52601 4.60135 4.67098 4.69371 4.75976 4.85189 4.87948 4.98142 5.01363 5.07035 5.09442 5.11883 5.17185 5.21246 5.34356 5.51819 5.55160 5.57843 5.64288 5.80789 5.93207 5.95116 6.11400 6.16670 6.55568 6.95867 7.39285 7.55173 8.72136 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.007626 B = 0.006521 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3670.661002 B = 4292.596141 C = 7156.595680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.028 4.028 3 Si 1.109 2.891 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.279 1.279 7 C -0.603 4.603 8 H 0.039 0.961 9 C 0.024 3.976 10 C 0.223 3.777 11 H 0.052 0.948 12 N -0.711 5.711 13 C 0.698 3.302 14 O -0.637 6.637 15 N -0.618 5.618 16 C 0.125 3.875 17 C -0.102 4.102 18 C -0.130 4.130 19 H 0.132 0.868 20 C -0.193 4.193 21 C -0.150 4.150 22 H 0.139 0.861 23 C 0.135 3.865 24 C -0.102 4.102 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.126 4.126 28 C -0.122 4.122 29 C -0.134 4.134 30 H 0.257 0.743 31 H 0.001 0.999 32 H 0.009 0.991 33 H 0.402 0.598 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.050 0.950 38 H 0.110 0.890 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.145 0.855 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.381 -12.589 -11.177 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.226 4.226 3 Si 0.931 3.069 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.205 1.205 7 C -0.641 4.641 8 H 0.058 0.942 9 C -0.014 4.014 10 C 0.117 3.883 11 H 0.070 0.930 12 N -0.366 5.366 13 C 0.400 3.600 14 O -0.519 6.519 15 N -0.354 5.354 16 C 0.002 3.998 17 C -0.140 4.140 18 C -0.148 4.148 19 H 0.150 0.850 20 C -0.231 4.231 21 C -0.169 4.169 22 H 0.157 0.843 23 C 0.012 3.988 24 C -0.103 4.103 25 C -0.138 4.138 26 C -0.140 4.140 27 C -0.144 4.144 28 C -0.140 4.140 29 C -0.152 4.152 30 H 0.067 0.933 31 H 0.019 0.981 32 H 0.027 0.973 33 H 0.240 0.760 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.136 0.864 43 H 0.166 0.834 44 H 0.172 0.828 45 H 0.163 0.837 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.559 -11.269 -10.482 17.610 hybrid contribution -0.133 -0.950 0.245 0.990 sum 8.426 -12.219 -10.238 18.031 Atomic orbital electron populations 1.70917 1.07679 1.29958 1.48324 1.27132 0.96528 1.06081 0.92876 0.83020 0.74219 0.71900 0.77731 1.20551 1.19389 1.20490 1.22173 0.93899 0.92756 1.55247 0.94240 1.19276 0.93919 0.92579 0.95607 1.19414 0.91432 0.91645 0.85816 0.93023 1.45106 1.16481 1.61076 1.13949 1.16136 0.81270 0.78693 0.83921 1.90811 1.69245 1.57151 1.34670 1.46502 1.23244 1.58247 1.07419 1.20872 0.82035 0.94372 1.02483 1.21049 0.98053 0.98621 0.96307 1.22104 0.95606 0.96769 1.00335 0.85002 1.23103 1.05870 0.93406 1.00672 1.22044 0.91672 1.01965 1.01206 0.84343 1.20685 0.95173 0.96909 0.86036 1.20471 0.98495 0.96425 0.94953 1.21023 0.98103 0.96828 0.97804 1.21446 0.98779 0.94749 0.99047 1.21497 0.99726 1.00931 0.92263 1.21394 0.97366 0.94930 1.00285 1.21163 1.00497 0.96759 0.96802 0.93305 0.98091 0.97328 0.76044 0.91184 0.89936 0.87606 0.93164 0.87211 0.92072 0.89086 0.91214 0.86449 0.83371 0.82826 0.83712 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.65 21.45 0.29 -56.17 16 2 C -0.03 -1.57 5.46 84.66 0.46 -1.11 16 3 Si 1.11 50.69 29.90 68.60 2.05 52.74 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.60 -34.01 8.84 25.60 0.23 -33.78 16 8 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 9 C 0.02 1.21 3.80 29.85 0.11 1.33 16 10 C 0.22 10.07 2.15 44.24 0.10 10.16 16 11 H 0.05 2.66 7.37 -2.39 -0.02 2.64 16 12 N -0.71 -28.49 3.89 -461.40 -1.80 -30.29 16 13 C 0.70 27.83 8.17 179.06 1.46 29.30 16 14 O -0.64 -30.31 15.16 -4.01 -0.06 -30.37 16 15 N -0.62 -18.64 2.97 -849.77 -2.52 -21.17 16 16 C 0.13 3.20 6.31 86.23 0.54 3.74 16 17 C -0.10 -2.08 5.97 29.93 0.18 -1.90 16 18 C -0.13 -2.34 6.19 -11.16 -0.07 -2.41 16 19 H 0.13 1.68 8.14 -2.39 -0.02 1.67 16 20 C -0.19 -4.36 9.90 30.58 0.30 -4.06 16 21 C -0.15 -2.93 5.99 -11.81 -0.07 -3.00 16 22 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 23 C 0.13 3.22 6.16 86.17 0.53 3.76 16 24 C -0.10 -4.04 4.91 -19.86 -0.10 -4.14 16 25 C -0.12 -4.05 9.32 22.27 0.21 -3.84 16 26 C -0.12 -3.35 10.05 22.27 0.22 -3.13 16 27 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 28 C -0.12 -3.55 10.05 22.27 0.22 -3.32 16 29 C -0.13 -4.92 9.67 22.27 0.22 -4.71 16 30 H 0.26 15.75 7.22 -92.71 -0.67 15.08 16 31 H 0.00 0.05 8.01 -2.39 -0.02 0.03 16 32 H 0.01 0.44 8.01 -2.39 -0.02 0.42 16 33 H 0.40 14.85 6.09 -92.71 -0.56 14.28 16 34 H 0.07 2.17 6.73 -2.39 -0.02 2.15 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.23 8.03 -2.39 -0.02 1.21 16 38 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 41 H 0.07 1.90 5.82 -2.38 -0.01 1.89 16 42 H 0.12 3.78 7.73 -2.91 -0.02 3.76 16 43 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 44 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 46 H 0.11 4.09 8.04 -2.91 -0.02 4.07 16 Total: -1.00 -73.62 371.84 3.24 -70.38 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.51 Total: 34.99 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 4.77 Total: -20.12 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -4.03 Total: -107.62 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.06 Total: -30.37 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 2.05 Total: 52.74 kcal Total: -73.62 3.24 -70.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595568367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.498 kcal (2) G-P(sol) polarization free energy of solvation -73.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds