Wall clock time and date at job start Fri Apr 10 2020 23:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46500 * 109.47466 * 64.99479 * 10 9 7 13 13 C 1.34771 * 120.00556 * 205.00158 * 12 10 9 14 14 O 1.21596 * 119.99804 * 0.02562 * 13 12 10 15 15 N 1.34775 * 120.00181 * 179.97438 * 13 12 10 16 16 C 1.46507 * 119.99725 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.46680 * 180.02562 * 16 15 13 18 18 C 1.30520 * 124.45281 * 94.70243 * 17 16 15 19 19 C 1.51099 * 111.10918 * 179.87802 * 18 17 16 20 20 C 1.54639 * 104.77837 * 343.92925 * 19 18 17 21 21 C 1.51107 * 124.44449 * 275.00052 * 17 16 15 22 22 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 23 23 C 1.38233 * 119.99377 * 279.72159 * 22 10 9 24 24 C 1.38237 * 119.99600 * 179.78842 * 23 22 10 25 25 C 1.38241 * 119.99990 * 0.44354 * 24 23 22 26 26 C 1.38237 * 119.99716 * 359.81238 * 25 24 23 27 27 C 1.38228 * 120.00326 * 99.99831 * 22 10 9 28 28 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 0.97002 * 119.99373 * 25.00408 * 12 10 9 32 32 H 0.96998 * 120.00237 * 0.02562 * 15 13 12 33 33 H 1.08995 * 109.47163 * 300.00364 * 16 15 13 34 34 H 1.09001 * 109.46789 * 60.00356 * 16 15 13 35 35 H 1.08008 * 124.44428 * 359.97438 * 18 17 16 36 36 H 1.09003 * 110.52472 * 225.02005 * 19 18 17 37 37 H 1.09001 * 110.19611 * 102.67900 * 19 18 17 38 38 H 1.08998 * 111.03825 * 266.40747 * 20 19 18 39 39 H 1.09003 * 111.03269 * 142.46819 * 20 19 18 40 40 H 1.09003 * 110.38895 * 315.22387 * 21 17 16 41 41 H 1.08997 * 110.38687 * 77.60886 * 21 17 16 42 42 H 1.07995 * 120.00514 * 359.97438 * 23 22 10 43 43 H 1.08001 * 120.00058 * 180.28006 * 24 23 22 44 44 H 1.07995 * 120.00194 * 179.83256 * 25 24 23 45 45 H 1.08001 * 119.99824 * 180.02562 * 26 25 24 46 46 H 1.08005 * 119.99906 * 359.97438 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5833 -3.1739 0.8519 12 7 3.6391 -3.2942 -1.2413 13 6 3.5125 -4.6351 -1.2869 14 8 3.7152 -5.2992 -0.2887 15 7 3.1602 -5.2400 -2.4386 16 6 3.0231 -6.6978 -2.4883 17 6 2.6246 -7.1176 -3.8796 18 6 3.4633 -7.4959 -4.8054 19 6 2.7393 -7.8525 -6.0828 20 6 1.2604 -8.0219 -5.6639 21 6 1.2021 -7.1499 -4.3882 22 6 5.5229 -2.6381 0.1409 23 6 6.3130 -2.4048 -0.9691 24 6 7.6901 -2.4019 -0.8489 25 6 8.2773 -2.6414 0.3795 26 6 7.4871 -2.8799 1.4884 27 6 6.1100 -2.8785 1.3690 28 1 -0.4849 0.8400 0.0004 29 1 3.8786 -0.6821 -0.8838 30 1 3.8711 -0.6785 0.8962 31 1 3.4771 -2.7643 -2.0375 32 1 2.9981 -4.7102 -3.2348 33 1 3.9745 -7.1613 -2.2277 34 1 2.2582 -7.0150 -1.7795 35 1 4.5342 -7.5487 -4.6750 36 1 3.1266 -8.7846 -6.4942 37 1 2.8382 -7.0458 -6.8092 38 1 1.0351 -9.0638 -5.4363 39 1 0.5896 -7.6369 -6.4320 40 1 0.5441 -7.6044 -3.6474 41 1 0.8630 -6.1430 -4.6317 42 1 5.8544 -2.2218 -1.9296 43 1 8.3074 -2.2151 -1.7152 44 1 9.3532 -2.6418 0.4729 45 1 7.9458 -3.0666 2.4482 46 1 5.4927 -3.0648 2.2355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595569438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:15 Heat of formation + Delta-G solvation = 0.904470 kcal Electronic energy + Delta-G solvation = -25563.644175 eV Core-core repulsion = 22031.793817 eV Total energy + Delta-G solvation = -3531.850359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.86527 -39.01308 -38.37954 -35.43906 -34.17995 -32.63579 -31.31405 -30.53574 -29.73259 -29.16677 -28.50670 -25.48009 -24.39519 -22.29519 -21.73990 -21.09914 -20.66624 -19.81274 -18.64138 -17.65246 -17.10565 -16.46412 -16.05095 -15.63868 -15.29575 -15.07079 -14.67622 -14.51523 -14.30833 -13.65857 -13.45936 -13.40668 -13.04966 -12.89862 -12.80754 -12.53293 -12.36317 -11.98356 -11.92709 -11.76323 -11.39796 -11.31153 -11.25433 -11.24025 -11.03522 -10.72983 -10.48690 -10.20511 -9.86079 -9.72940 -9.31469 -8.96352 -8.85267 -8.61981 -8.57404 -8.32951 -8.22453 -6.09870 -4.09257 1.70860 1.74591 1.85779 3.25208 3.33804 3.35667 3.38307 3.75462 4.16122 4.37439 4.39052 4.40387 4.79856 4.84000 4.94033 5.18774 5.20987 5.22183 5.24435 5.31478 5.37989 5.48324 5.53781 5.58025 5.63658 5.77725 5.82329 5.84194 5.85420 5.87586 6.01818 6.06865 6.27705 6.34366 6.36706 6.46478 6.68205 6.77297 6.78914 6.79665 6.88161 6.96498 7.07185 7.31893 7.34625 7.51734 7.66990 8.45354 8.55294 8.96907 9.14000 9.51082 11.02988 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009251 B = 0.004076 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.887676 B = 6867.917127 C = 9091.787801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.213 3.787 11 H 0.092 0.908 12 N -0.717 5.717 13 C 0.706 3.294 14 O -0.598 6.598 15 N -0.747 5.747 16 C 0.190 3.810 17 C -0.149 4.149 18 C -0.146 4.146 19 C -0.101 4.101 20 C -0.125 4.125 21 C -0.094 4.094 22 C -0.075 4.075 23 C -0.108 4.108 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.123 4.123 27 C -0.107 4.107 28 H 0.263 0.737 29 H 0.018 0.982 30 H 0.034 0.966 31 H 0.396 0.604 32 H 0.395 0.605 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.054 -11.613 -10.118 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.094 0.906 9 C -0.051 4.051 10 C 0.107 3.893 11 H 0.110 0.890 12 N -0.369 5.369 13 C 0.406 3.594 14 O -0.477 6.477 15 N -0.404 5.404 16 C 0.066 3.934 17 C -0.150 4.150 18 C -0.165 4.165 19 C -0.138 4.138 20 C -0.163 4.163 21 C -0.131 4.131 22 C -0.076 4.076 23 C -0.126 4.126 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.141 4.141 27 C -0.125 4.125 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.230 0.770 32 H 0.228 0.772 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.053 -12.102 -9.159 18.205 hybrid contribution 0.236 1.492 -0.771 1.696 sum 10.288 -10.610 -9.931 17.806 Atomic orbital electron populations 1.69908 1.06265 1.26893 1.50652 1.24987 0.94674 0.98945 0.94519 0.86860 0.80505 0.83909 0.78526 1.20322 1.21347 1.18902 1.21030 0.88702 0.94674 1.51234 0.90581 1.19881 0.97807 0.89901 0.97554 1.19818 0.87342 0.95810 0.86291 0.89031 1.45030 1.73253 1.04395 1.14218 1.15949 0.77854 0.82433 0.83212 1.90877 1.58440 1.64257 1.34093 1.45070 1.76224 1.07087 1.11984 1.19680 1.01210 0.79895 0.92580 1.22107 0.96177 1.01424 0.95253 1.23264 0.99091 0.99484 0.94656 1.21367 0.94659 1.01476 0.96279 1.22448 0.96273 1.00185 0.97352 1.21313 0.94303 1.00609 0.96884 1.20635 0.97163 0.96492 0.93353 1.20906 0.93279 0.99986 0.98460 1.21044 0.94870 1.01191 0.97320 1.21006 0.99190 1.01844 0.93228 1.21057 0.93841 1.00850 0.98349 1.21045 0.94654 0.99352 0.97489 0.92682 0.96362 0.94762 0.76986 0.77209 0.91391 0.91173 0.85753 0.91177 0.90576 0.91142 0.90927 0.90910 0.90377 0.86605 0.86773 0.86828 0.86541 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -13.97 9.39 -34.44 -0.32 -14.30 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 10 C 0.21 4.29 2.12 -69.08 -0.15 4.14 16 11 H 0.09 2.07 7.44 -51.92 -0.39 1.68 16 12 N -0.72 -13.10 4.02 -59.81 -0.24 -13.34 16 13 C 0.71 13.15 8.52 -86.92 -0.74 12.41 16 14 O -0.60 -13.35 16.01 5.28 0.08 -13.27 16 15 N -0.75 -10.82 5.55 -66.41 -0.37 -11.19 16 16 C 0.19 2.49 6.10 -5.19 -0.03 2.46 16 17 C -0.15 -1.56 5.53 -100.73 -0.56 -2.12 16 18 C -0.15 -1.35 10.59 -35.70 -0.38 -1.72 16 19 C -0.10 -0.78 6.81 -26.83 -0.18 -0.96 16 20 C -0.13 -0.97 7.19 -25.01 -0.18 -1.15 16 21 C -0.09 -0.90 6.76 -26.82 -0.18 -1.08 16 22 C -0.07 -1.36 4.91 -104.63 -0.51 -1.87 16 23 C -0.11 -1.75 9.33 -39.58 -0.37 -2.12 16 24 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 16 25 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 26 C -0.12 -1.80 10.05 -39.59 -0.40 -2.20 16 27 C -0.11 -1.82 9.67 -39.59 -0.38 -2.20 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.40 7.58 -51.93 -0.39 0.00 16 30 H 0.03 0.79 7.19 -51.93 -0.37 0.42 16 31 H 0.40 6.55 8.62 -40.82 -0.35 6.20 16 32 H 0.39 4.85 8.48 -40.82 -0.35 4.50 16 33 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.12 1.74 7.71 -52.49 -0.40 1.33 16 43 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 46 H 0.12 1.99 8.04 -52.48 -0.42 1.57 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -32.56 382.54 -11.37 -43.92 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -7.34 Total: 11.70 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -5.38 Total: -13.71 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.16 Total: -50.64 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.56 -11.37 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595569438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.829 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds