Wall clock time and date at job start Fri Apr 10 2020 23:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00016 * 2 1 4 4 H 1.48503 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47226 * 299.99750 * 3 2 1 6 6 H 1.48500 * 109.47660 * 59.99842 * 3 2 1 7 7 C 1.37880 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46910 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47452 * 54.99763 * 10 9 7 12 12 N 1.46500 * 109.47327 * 294.99702 * 10 9 7 13 13 C 1.34773 * 120.00431 * 155.00306 * 12 10 9 14 14 O 1.21593 * 119.99894 * 359.97438 * 13 12 10 15 15 N 1.34777 * 120.00097 * 179.72742 * 13 12 10 16 16 C 1.46504 * 119.99854 * 180.27545 * 15 13 12 17 17 C 1.53004 * 109.46928 * 179.97438 * 16 15 13 18 18 C 1.54641 * 111.03107 * 287.02078 * 17 16 15 19 19 C 1.51105 * 104.72004 * 217.33164 * 18 17 16 20 20 C 1.30528 * 111.10488 * 16.44081 * 19 18 17 21 21 C 1.51108 * 111.10465 * 359.97438 * 20 19 18 22 22 C 1.50701 * 109.47249 * 174.99556 * 10 9 7 23 23 C 1.38242 * 120.00000 * 79.72291 * 22 10 9 24 24 C 1.38235 * 120.00185 * 179.78840 * 23 22 10 25 25 C 1.38238 * 119.99649 * 0.44590 * 24 23 22 26 26 C 1.38234 * 120.00400 * 359.80779 * 25 24 23 27 27 C 1.38231 * 120.00164 * 260.00009 * 22 10 9 28 28 H 0.97001 * 119.99846 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47743 * 59.99451 * 9 7 2 30 30 H 1.09007 * 109.46698 * 299.99227 * 9 7 2 31 31 H 0.97000 * 119.99456 * 334.99869 * 12 10 9 32 32 H 0.97000 * 119.99736 * 0.26819 * 15 13 12 33 33 H 1.08998 * 109.46968 * 299.99782 * 16 15 13 34 34 H 1.08997 * 109.47198 * 59.99605 * 16 15 13 35 35 H 1.08995 * 110.91465 * 51.03180 * 17 16 15 36 36 H 1.08993 * 110.38958 * 336.14573 * 18 17 16 37 37 H 1.08993 * 110.38263 * 98.52886 * 18 17 16 38 38 H 1.08005 * 124.44897 * 196.45614 * 19 18 17 39 39 H 1.07997 * 124.44801 * 180.02562 * 20 19 18 40 40 H 1.09001 * 110.38329 * 224.75298 * 21 20 19 41 41 H 1.08999 * 110.38665 * 102.37519 * 21 20 19 42 42 H 1.08001 * 119.99630 * 0.02562 * 23 22 10 43 43 H 1.07995 * 120.00226 * 180.27406 * 24 23 22 44 44 H 1.07998 * 119.99720 * 179.83211 * 25 24 23 45 45 H 1.07995 * 120.00515 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00539 * 359.97438 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6620 0.0005 11 1 2.9293 -3.5552 0.8423 12 7 3.0061 -3.6540 -1.2513 13 6 4.2308 -4.2147 -1.2992 14 8 4.7043 -4.7268 -0.3032 15 7 4.9285 -4.2121 -2.4522 16 6 6.2572 -4.8269 -2.5058 17 6 6.8265 -4.6888 -3.9192 18 6 6.1098 -5.6437 -4.9019 19 6 7.1983 -6.1236 -5.8337 20 6 8.3813 -5.8896 -5.3344 21 6 8.2791 -5.2140 -3.9866 22 6 1.4958 -4.9636 0.1245 23 6 0.8892 -5.5204 -0.9860 24 6 0.2055 -6.7166 -0.8733 25 6 0.1206 -7.3513 0.3519 26 6 0.7227 -6.7919 1.4634 27 6 1.4101 -5.5979 1.3497 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8895 30 1 0.6240 -2.5567 0.8904 31 1 2.6285 -3.2451 -2.0457 32 1 4.5509 -3.8032 -3.2467 33 1 6.9176 -4.3270 -1.7972 34 1 6.1796 -5.8829 -2.2473 35 1 6.7678 -3.6562 -4.2631 36 1 5.6727 -6.4846 -4.3636 37 1 5.3416 -5.1081 -5.4596 38 1 7.0207 -6.5977 -6.7877 39 1 9.3111 -6.1445 -5.8210 40 1 8.9859 -4.3867 -3.9220 41 1 8.4600 -5.9324 -3.1871 42 1 0.9527 -5.0228 -1.9424 43 1 -0.2646 -7.1538 -1.7417 44 1 -0.4159 -8.2844 0.4405 45 1 0.6560 -7.2875 2.4206 46 1 1.8805 -5.1609 2.2181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599014467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:55 Heat of formation + Delta-G solvation = -1.847875 kcal Electronic energy + Delta-G solvation = -25621.176275 eV Core-core repulsion = 22089.206566 eV Total energy + Delta-G solvation = -3531.969709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.87737 -39.06312 -38.33347 -35.33875 -34.19861 -32.70280 -31.24241 -30.43796 -29.74406 -28.64463 -28.36287 -25.26682 -24.30837 -22.24765 -21.91111 -20.76445 -20.45723 -19.70321 -18.98112 -17.82173 -16.86639 -16.35016 -16.13955 -15.92087 -15.32300 -14.85286 -14.57897 -14.52833 -14.29569 -13.58104 -13.39788 -13.17967 -12.95009 -12.92613 -12.63179 -12.45551 -12.36783 -12.08362 -11.78410 -11.48909 -11.38095 -11.31488 -11.10499 -11.05550 -10.88622 -10.71280 -10.56372 -10.41853 -9.74793 -9.63769 -9.25355 -9.12273 -8.84614 -8.49621 -8.43928 -8.23968 -8.12364 -6.07641 -4.10499 1.83098 1.85361 2.02665 3.18107 3.26729 3.35417 3.40098 3.76718 4.24729 4.37915 4.38247 4.41605 4.66097 4.86217 5.04048 5.09752 5.29201 5.30556 5.32195 5.36840 5.42574 5.49772 5.54949 5.59759 5.61543 5.72297 5.77023 5.90415 5.95986 5.99255 6.11998 6.21060 6.28878 6.40933 6.47667 6.63123 6.64777 6.78282 6.89187 6.90224 7.01659 7.16083 7.37730 7.45794 7.54823 7.71816 7.89971 8.28483 8.58082 8.95964 9.16306 9.54364 11.02975 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008418 B = 0.004209 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.567017 B = 6650.664256 C = 9217.123250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.202 3.798 11 H 0.086 0.914 12 N -0.717 5.717 13 C 0.703 3.297 14 O -0.599 6.599 15 N -0.752 5.752 16 C 0.152 3.848 17 C -0.106 4.106 18 C -0.098 4.098 19 C -0.166 4.166 20 C -0.169 4.169 21 C -0.093 4.093 22 C -0.070 4.070 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.108 4.108 28 H 0.261 0.739 29 H 0.024 0.976 30 H 0.035 0.965 31 H 0.396 0.604 32 H 0.394 0.606 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.153 -12.790 -9.530 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.097 3.903 11 H 0.104 0.896 12 N -0.369 5.369 13 C 0.403 3.597 14 O -0.478 6.478 15 N -0.409 5.409 16 C 0.028 3.972 17 C -0.125 4.125 18 C -0.135 4.135 19 C -0.184 4.184 20 C -0.187 4.187 21 C -0.131 4.131 22 C -0.071 4.071 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.127 4.127 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.230 0.770 32 H 0.227 0.773 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.434 -13.128 -8.571 18.297 hybrid contribution 0.032 1.323 -0.864 1.580 sum 9.465 -11.805 -9.435 17.832 Atomic orbital electron populations 1.69973 1.06000 1.26632 1.50555 1.24991 0.94790 0.99208 0.95229 0.86547 0.80168 0.83780 0.77582 1.19765 1.21090 1.20999 1.21186 0.93155 0.90359 1.50838 0.92309 1.19400 0.93232 0.90233 0.98534 1.20101 0.92891 0.91608 0.85688 0.89613 1.45123 1.16171 1.61015 1.14581 1.15996 0.81155 0.79335 0.83221 1.90873 1.70679 1.51879 1.34366 1.45065 1.19267 1.64569 1.11989 1.21082 0.82911 0.98137 0.95111 1.22300 0.95241 1.00153 0.94792 1.21491 0.97300 0.98843 0.95891 1.23311 0.95142 1.00740 0.99245 1.23265 0.98020 1.00634 0.96789 1.21331 0.95891 0.99860 0.95982 1.20611 0.96531 0.96699 0.93261 1.20888 0.97548 0.95535 0.98500 1.21029 1.00055 0.96033 0.97305 1.20979 1.01160 1.00033 0.93254 1.21036 0.98629 0.96229 0.98251 1.21024 0.99073 0.95078 0.97487 0.92970 0.95782 0.94716 0.77019 0.77310 0.91734 0.91835 0.89504 0.90242 0.91053 0.86056 0.85986 0.90855 0.90192 0.86673 0.86856 0.86928 0.86666 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -13.74 8.84 -34.44 -0.30 -14.04 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.56 4.49 -27.89 -0.13 0.44 16 10 C 0.20 4.19 2.11 -69.08 -0.15 4.04 16 11 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 12 N -0.72 -13.11 4.05 -59.81 -0.24 -13.36 16 13 C 0.70 12.88 8.52 -86.92 -0.74 12.14 16 14 O -0.60 -13.27 16.01 5.28 0.08 -13.19 16 15 N -0.75 -10.31 5.51 -65.22 -0.36 -10.67 16 16 C 0.15 1.84 4.99 -4.04 -0.02 1.82 16 17 C -0.11 -0.98 3.16 -88.91 -0.28 -1.26 16 18 C -0.10 -0.86 6.33 -26.82 -0.17 -1.03 16 19 C -0.17 -1.37 10.78 -35.70 -0.38 -1.76 16 20 C -0.17 -1.36 10.78 -35.69 -0.38 -1.75 16 21 C -0.09 -0.78 6.38 -26.84 -0.17 -0.95 16 22 C -0.07 -1.32 4.91 -104.62 -0.51 -1.84 16 23 C -0.11 -1.83 9.32 -39.58 -0.37 -2.19 16 24 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 25 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 26 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 27 C -0.11 -1.93 9.67 -39.58 -0.38 -2.32 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.40 6.58 8.62 -40.82 -0.35 6.23 16 32 H 0.39 4.41 8.49 -40.82 -0.35 4.06 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.82 7.92 -51.93 -0.41 0.41 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.76 7.74 -51.93 -0.40 0.35 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 42 H 0.12 1.85 7.73 -52.49 -0.41 1.44 16 43 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.12 2.06 8.04 -52.49 -0.42 1.64 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -31.98 384.63 -11.62 -43.60 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.33 Total: 10.80 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -5.28 Total: -14.17 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.14 Total: -48.92 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.98 -11.62 -43.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599014467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.751 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds