Wall clock time and date at job start Fri Apr 10 2020 23:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00016 * 2 1 4 4 H 1.48503 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47226 * 299.99750 * 3 2 1 6 6 H 1.48500 * 109.47660 * 59.99842 * 3 2 1 7 7 C 1.37880 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46910 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47452 * 54.99763 * 10 9 7 12 12 N 1.46500 * 109.47327 * 294.99702 * 10 9 7 13 13 C 1.34773 * 120.00431 * 155.00306 * 12 10 9 14 14 O 1.21593 * 119.99894 * 359.97438 * 13 12 10 15 15 N 1.34777 * 120.00097 * 179.72742 * 13 12 10 16 16 C 1.46504 * 119.99854 * 180.27545 * 15 13 12 17 17 C 1.53004 * 109.46928 * 179.97438 * 16 15 13 18 18 C 1.54641 * 111.03107 * 287.02078 * 17 16 15 19 19 C 1.51105 * 104.72004 * 217.33164 * 18 17 16 20 20 C 1.30528 * 111.10488 * 16.44081 * 19 18 17 21 21 C 1.51108 * 111.10465 * 359.97438 * 20 19 18 22 22 C 1.50701 * 109.47249 * 174.99556 * 10 9 7 23 23 C 1.38242 * 120.00000 * 79.72291 * 22 10 9 24 24 C 1.38235 * 120.00185 * 179.78840 * 23 22 10 25 25 C 1.38238 * 119.99649 * 0.44590 * 24 23 22 26 26 C 1.38234 * 120.00400 * 359.80779 * 25 24 23 27 27 C 1.38231 * 120.00164 * 260.00009 * 22 10 9 28 28 H 0.97001 * 119.99846 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47743 * 59.99451 * 9 7 2 30 30 H 1.09007 * 109.46698 * 299.99227 * 9 7 2 31 31 H 0.97000 * 119.99456 * 334.99869 * 12 10 9 32 32 H 0.97000 * 119.99736 * 0.26819 * 15 13 12 33 33 H 1.08998 * 109.46968 * 299.99782 * 16 15 13 34 34 H 1.08997 * 109.47198 * 59.99605 * 16 15 13 35 35 H 1.08995 * 110.91465 * 51.03180 * 17 16 15 36 36 H 1.08993 * 110.38958 * 336.14573 * 18 17 16 37 37 H 1.08993 * 110.38263 * 98.52886 * 18 17 16 38 38 H 1.08005 * 124.44897 * 196.45614 * 19 18 17 39 39 H 1.07997 * 124.44801 * 180.02562 * 20 19 18 40 40 H 1.09001 * 110.38329 * 224.75298 * 21 20 19 41 41 H 1.08999 * 110.38665 * 102.37519 * 21 20 19 42 42 H 1.08001 * 119.99630 * 0.02562 * 23 22 10 43 43 H 1.07995 * 120.00226 * 180.27406 * 24 23 22 44 44 H 1.07998 * 119.99720 * 179.83211 * 25 24 23 45 45 H 1.07995 * 120.00515 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00539 * 359.97438 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6620 0.0005 11 1 2.9293 -3.5552 0.8423 12 7 3.0061 -3.6540 -1.2513 13 6 4.2308 -4.2147 -1.2992 14 8 4.7043 -4.7268 -0.3032 15 7 4.9285 -4.2121 -2.4522 16 6 6.2572 -4.8269 -2.5058 17 6 6.8265 -4.6888 -3.9192 18 6 6.1098 -5.6437 -4.9019 19 6 7.1983 -6.1236 -5.8337 20 6 8.3813 -5.8896 -5.3344 21 6 8.2791 -5.2140 -3.9866 22 6 1.4958 -4.9636 0.1245 23 6 0.8892 -5.5204 -0.9860 24 6 0.2055 -6.7166 -0.8733 25 6 0.1206 -7.3513 0.3519 26 6 0.7227 -6.7919 1.4634 27 6 1.4101 -5.5979 1.3497 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8895 30 1 0.6240 -2.5567 0.8904 31 1 2.6285 -3.2451 -2.0457 32 1 4.5509 -3.8032 -3.2467 33 1 6.9176 -4.3270 -1.7972 34 1 6.1796 -5.8829 -2.2473 35 1 6.7678 -3.6562 -4.2631 36 1 5.6727 -6.4846 -4.3636 37 1 5.3416 -5.1081 -5.4596 38 1 7.0207 -6.5977 -6.7877 39 1 9.3111 -6.1445 -5.8210 40 1 8.9859 -4.3867 -3.9220 41 1 8.4600 -5.9324 -3.1871 42 1 0.9527 -5.0228 -1.9424 43 1 -0.2646 -7.1538 -1.7417 44 1 -0.4159 -8.2844 0.4405 45 1 0.6560 -7.2875 2.4206 46 1 1.8805 -5.1609 2.2181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599014467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:54 Heat of formation + Delta-G solvation = -19.623889 kcal Electronic energy + Delta-G solvation = -25621.947101 eV Core-core repulsion = 22089.206566 eV Total energy + Delta-G solvation = -3532.740535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26132 -40.09536 -39.44930 -36.88346 -35.51668 -34.70376 -32.61633 -31.69084 -30.81150 -30.32515 -29.04388 -26.83235 -25.53590 -23.77632 -23.35314 -22.16936 -21.42804 -21.07495 -19.67135 -19.16254 -18.60899 -17.77296 -17.29904 -16.98665 -16.52478 -16.48631 -16.10330 -15.87369 -15.55975 -14.91040 -14.81534 -14.47364 -14.25139 -14.17053 -13.89073 -13.65059 -13.61333 -13.41616 -12.98426 -12.91747 -12.64132 -12.54069 -12.46826 -12.17815 -12.10182 -12.01603 -11.87064 -11.81700 -11.57341 -11.30542 -11.22612 -10.58480 -10.26222 -9.75866 -9.74733 -9.66611 -9.48703 -8.19606 -6.29349 0.53315 0.58024 1.38213 1.41126 1.41168 1.52630 1.85493 2.27836 2.40526 2.97440 3.13839 3.42531 3.64472 3.72094 3.91672 4.02730 4.05878 4.22744 4.33736 4.35543 4.40681 4.46210 4.54576 4.67530 4.71803 4.78620 4.81116 4.85311 4.87142 4.92769 5.06381 5.13062 5.14839 5.21974 5.30966 5.34084 5.44928 5.58074 5.63025 5.64761 5.66450 5.67734 5.79487 5.91294 6.04318 6.15200 6.18389 6.23153 6.83417 7.21308 7.39680 7.70676 8.91317 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008418 B = 0.004209 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.567017 B = 6650.664256 C = 9217.123250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.039 3.961 10 C 0.219 3.781 11 H 0.054 0.946 12 N -0.712 5.712 13 C 0.700 3.300 14 O -0.640 6.640 15 N -0.734 5.734 16 C 0.154 3.846 17 C -0.098 4.098 18 C -0.099 4.099 19 C -0.174 4.174 20 C -0.171 4.171 21 C -0.095 4.095 22 C -0.097 4.097 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.134 4.134 28 H 0.264 0.736 29 H 0.013 0.987 30 H 0.004 0.996 31 H 0.404 0.596 32 H 0.409 0.591 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.143 0.857 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.508 -13.794 -11.256 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.001 3.999 10 C 0.113 3.887 11 H 0.072 0.928 12 N -0.365 5.365 13 C 0.400 3.600 14 O -0.522 6.522 15 N -0.390 5.390 16 C 0.030 3.970 17 C -0.117 4.117 18 C -0.136 4.136 19 C -0.191 4.191 20 C -0.189 4.189 21 C -0.133 4.133 22 C -0.098 4.098 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.153 4.153 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.023 0.977 31 H 0.240 0.760 32 H 0.244 0.756 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.138 0.862 43 H 0.164 0.836 44 H 0.169 0.831 45 H 0.161 0.839 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.800 -14.126 -10.350 20.068 hybrid contribution -0.094 1.560 -0.305 1.592 sum 9.707 -12.566 -10.655 19.122 Atomic orbital electron populations 1.70078 1.07420 1.27638 1.51445 1.25769 0.95571 1.02606 0.94830 0.85519 0.78807 0.79588 0.77808 1.19526 1.20007 1.20800 1.21416 0.92934 0.91609 1.50525 0.93000 1.19132 0.93236 0.91095 0.96422 1.19562 0.91665 0.91809 0.85680 0.92752 1.44914 1.16320 1.61232 1.14023 1.16134 0.81017 0.78995 0.83831 1.90840 1.71502 1.53639 1.36234 1.44941 1.19374 1.63696 1.11033 1.21163 0.81707 0.97169 0.96960 1.22220 0.95873 1.00808 0.92779 1.21483 0.97768 0.98442 0.95872 1.23446 0.94859 1.01051 0.99787 1.23429 0.98757 1.00304 0.96385 1.21363 0.95267 1.00213 0.96437 1.20493 0.98151 0.96445 0.94711 1.21050 0.98025 0.96667 0.98048 1.21433 0.98981 0.94975 0.98911 1.21461 0.99994 1.00942 0.92407 1.21382 0.97561 0.95129 1.00140 1.21184 1.00457 0.96652 0.97004 0.92731 0.96862 0.97743 0.76043 0.75561 0.92935 0.92751 0.88831 0.91189 0.90267 0.84653 0.84374 0.90016 0.90440 0.86178 0.83627 0.83136 0.83901 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.07 13.29 21.45 0.28 -53.79 16 2 C 0.01 0.60 5.46 84.66 0.46 1.06 16 3 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.53 -28.84 8.84 25.60 0.23 -28.61 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.04 1.96 4.49 29.85 0.13 2.09 16 10 C 0.22 9.57 2.11 44.24 0.09 9.67 16 11 H 0.05 2.69 7.44 -2.39 -0.02 2.67 16 12 N -0.71 -26.92 4.05 -461.41 -1.87 -28.79 16 13 C 0.70 26.30 8.52 179.06 1.53 27.83 16 14 O -0.64 -29.45 16.01 -4.01 -0.06 -29.52 16 15 N -0.73 -20.02 5.51 -478.52 -2.64 -22.65 16 16 C 0.15 3.71 4.99 86.38 0.43 4.14 16 17 C -0.10 -1.69 3.16 -9.68 -0.03 -1.72 16 18 C -0.10 -1.58 6.33 30.54 0.19 -1.38 16 19 C -0.17 -2.51 10.78 26.26 0.28 -2.22 16 20 C -0.17 -2.40 10.78 26.26 0.28 -2.12 16 21 C -0.10 -1.46 6.38 30.53 0.19 -1.27 16 22 C -0.10 -3.79 4.91 -19.86 -0.10 -3.89 16 23 C -0.12 -4.07 9.32 22.27 0.21 -3.87 16 24 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 25 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 26 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 27 C -0.13 -4.95 9.67 22.27 0.22 -4.74 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 31 H 0.40 13.69 8.62 -92.71 -0.80 12.89 16 32 H 0.41 8.76 8.49 -92.71 -0.79 7.98 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.43 7.92 -2.39 -0.02 1.41 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.26 7.74 -2.39 -0.02 1.24 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.23 7.89 -2.39 -0.02 1.21 16 42 H 0.12 3.83 7.73 -2.91 -0.02 3.81 16 43 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 44 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 45 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 46 H 0.11 4.12 8.04 -2.91 -0.02 4.10 16 Total: -1.00 -70.69 384.63 1.93 -68.76 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.61 Total: 35.29 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 4.79 Total: -14.97 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -4.22 Total: -105.23 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.06 Total: -29.52 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -70.69 1.93 -68.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599014467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.141 kcal (2) G-P(sol) polarization free energy of solvation -70.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds