Wall clock time and date at job start Fri Apr 10 2020 23:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99916 * 2 1 4 4 H 1.48497 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47066 * 300.00006 * 3 2 1 6 6 H 1.48506 * 109.47234 * 59.99872 * 3 2 1 7 7 C 1.37876 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00344 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47468 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.46317 * 304.99814 * 10 9 7 12 12 N 1.46494 * 109.47057 * 64.99659 * 10 9 7 13 13 C 1.34784 * 119.99635 * 205.00313 * 12 10 9 14 14 O 1.21579 * 120.00114 * 0.02562 * 13 12 10 15 15 N 1.34777 * 119.99908 * 179.97438 * 13 12 10 16 16 C 1.46496 * 120.00258 * 179.97438 * 15 13 12 17 17 C 1.52993 * 109.47551 * 180.02562 * 16 15 13 18 18 C 1.54636 * 111.04027 * 287.02914 * 17 16 15 19 19 C 1.51104 * 104.72617 * 217.33465 * 18 17 16 20 20 C 1.30531 * 111.10224 * 16.43047 * 19 18 17 21 21 C 1.51104 * 111.10513 * 0.02562 * 20 19 18 22 22 C 1.50696 * 109.47160 * 184.99770 * 10 9 7 23 23 C 1.38232 * 120.00207 * 279.72653 * 22 10 9 24 24 C 1.38237 * 120.00415 * 179.81572 * 23 22 10 25 25 C 1.38239 * 119.99277 * 0.38823 * 24 23 22 26 26 C 1.38232 * 120.00347 * 359.86052 * 25 24 23 27 27 C 1.38231 * 119.99992 * 359.95513 * 26 25 24 28 28 H 0.96991 * 120.00183 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47353 * 59.99436 * 9 7 2 30 30 H 1.09010 * 109.46531 * 299.99977 * 9 7 2 31 31 H 0.96995 * 120.00292 * 25.27746 * 12 10 9 32 32 H 0.96999 * 120.00047 * 0.02562 * 15 13 12 33 33 H 1.09000 * 109.47024 * 300.00478 * 16 15 13 34 34 H 1.09004 * 109.46875 * 60.00324 * 16 15 13 35 35 H 1.09001 * 110.91225 * 51.03481 * 17 16 15 36 36 H 1.09004 * 110.38148 * 336.14115 * 18 17 16 37 37 H 1.09000 * 110.38711 * 98.51872 * 18 17 16 38 38 H 1.07991 * 124.44584 * 196.45873 * 19 18 17 39 39 H 1.08000 * 124.44581 * 180.02562 * 20 19 18 40 40 H 1.08995 * 110.38272 * 224.74862 * 21 20 19 41 41 H 1.09003 * 110.38232 * 102.37228 * 21 20 19 42 42 H 1.08004 * 119.99607 * 359.97438 * 23 22 10 43 43 H 1.07995 * 120.00013 * 180.22954 * 24 23 22 44 44 H 1.08003 * 119.99238 * 179.83680 * 25 24 23 45 45 H 1.08000 * 119.99501 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.99670 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 1 2.9300 -3.5555 -0.8396 12 7 3.0054 -3.6534 1.2541 13 6 4.2301 -4.2140 1.3030 14 8 4.7043 -4.7265 0.3077 15 7 4.9297 -4.2055 2.4550 16 6 6.2606 -4.8153 2.5083 17 6 6.8316 -4.6711 3.9203 18 6 7.2546 -3.2105 4.2016 19 6 8.5136 -3.3278 5.0289 20 6 9.0197 -4.5282 4.9469 21 6 8.1831 -5.4114 4.0507 22 6 1.4960 -4.9637 -0.1219 23 6 0.8984 -5.5257 0.9906 24 6 0.2078 -6.7178 0.8764 25 6 0.1218 -7.3519 -0.3490 26 6 0.7238 -6.7925 -1.4605 27 6 1.4111 -5.5986 -1.3470 28 1 -0.4850 0.8399 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5566 0.8904 31 1 2.6257 -3.2477 2.0491 32 1 4.5516 -3.7963 3.2490 33 1 6.1864 -5.8724 2.2530 34 1 6.9182 -4.3151 1.7973 35 1 6.1188 -5.0230 4.6661 36 1 7.4616 -2.6886 3.2672 37 1 6.4779 -2.6917 4.7634 38 1 8.9384 -2.5242 5.6119 39 1 9.9185 -4.8481 5.4532 40 1 8.0373 -6.3890 4.5100 41 1 8.6549 -5.5164 3.0737 42 1 0.9688 -5.0321 1.9487 43 1 -0.2623 -7.1549 1.7448 44 1 -0.4156 -8.2845 -0.4377 45 1 0.6568 -7.2882 -2.4177 46 1 1.8818 -5.1618 -2.2154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599014474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:58 Heat of formation + Delta-G solvation = -1.781550 kcal Electronic energy + Delta-G solvation = -25607.718635 eV Core-core repulsion = 22075.751802 eV Total energy + Delta-G solvation = -3531.966833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.87648 -39.05402 -38.32957 -35.33833 -34.19842 -32.70326 -31.23932 -30.43848 -29.73727 -28.64539 -28.33691 -25.26253 -24.30452 -22.24553 -21.91349 -20.76290 -20.44906 -19.70128 -18.95886 -17.82180 -16.84463 -16.37547 -16.13699 -15.92804 -15.16432 -15.01178 -14.58519 -14.51865 -14.24839 -13.58090 -13.38914 -13.21157 -12.93722 -12.90420 -12.60418 -12.46945 -12.34255 -12.08342 -11.77334 -11.50909 -11.35905 -11.29590 -11.10556 -11.03539 -10.88999 -10.71161 -10.56410 -10.42198 -9.74746 -9.63891 -9.25255 -9.09866 -8.84611 -8.49682 -8.43946 -8.24143 -8.12278 -6.07588 -4.10440 1.83060 1.85310 2.05148 3.18014 3.26643 3.35332 3.39978 3.76802 4.24861 4.38922 4.40002 4.41522 4.67061 4.86342 5.06269 5.10513 5.29223 5.30671 5.32074 5.38254 5.42110 5.51250 5.57331 5.59676 5.62437 5.75118 5.81105 5.89108 5.95943 5.99082 6.13295 6.21008 6.31528 6.40865 6.47585 6.63119 6.67100 6.78337 6.89136 6.90193 7.01550 7.16104 7.37674 7.45731 7.54864 7.71822 7.90014 8.28545 8.58011 8.96006 9.16251 9.54429 11.03062 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.007982 B = 0.004424 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3507.172734 B = 6328.052040 C = 9281.573151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.202 3.798 11 H 0.086 0.914 12 N -0.717 5.717 13 C 0.703 3.297 14 O -0.599 6.599 15 N -0.752 5.752 16 C 0.152 3.848 17 C -0.105 4.105 18 C -0.100 4.100 19 C -0.164 4.164 20 C -0.172 4.172 21 C -0.092 4.092 22 C -0.070 4.070 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.108 4.108 28 H 0.261 0.739 29 H 0.035 0.965 30 H 0.024 0.976 31 H 0.396 0.604 32 H 0.394 0.606 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.718 -11.564 9.182 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.097 3.903 11 H 0.104 0.896 12 N -0.369 5.369 13 C 0.403 3.597 14 O -0.478 6.478 15 N -0.409 5.409 16 C 0.027 3.973 17 C -0.124 4.124 18 C -0.137 4.137 19 C -0.182 4.182 20 C -0.190 4.190 21 C -0.130 4.130 22 C -0.071 4.071 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.127 4.127 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.230 0.770 32 H 0.227 0.773 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.998 -11.905 8.225 17.588 hybrid contribution 0.072 1.419 0.835 1.648 sum 10.070 -10.487 9.060 17.131 Atomic orbital electron populations 1.69968 1.05998 1.26634 1.50570 1.24986 0.94782 0.99191 0.95231 0.86552 0.80172 0.83803 0.77584 1.19766 1.20999 1.21091 1.21184 0.93150 0.90354 1.50821 0.92313 1.19401 0.93229 0.90233 0.98531 1.20100 0.92902 0.91610 0.85671 0.89604 1.45122 1.16168 1.61102 1.14501 1.15995 0.81169 0.79325 0.83217 1.90869 1.70698 1.51834 1.34380 1.45064 1.18955 1.64720 1.12152 1.21084 0.82876 0.98182 0.95119 1.22294 0.97102 0.96026 0.96974 1.21512 0.95808 0.96559 0.99832 1.23322 0.97813 0.97639 0.99416 1.23251 1.00018 0.95988 0.99695 1.21329 0.93625 0.98463 0.99569 1.20613 0.96580 0.96676 0.93254 1.20885 0.97578 0.95561 0.98464 1.21031 0.99987 0.96093 0.97313 1.20980 1.01172 1.00018 0.93259 1.21034 0.98629 0.96235 0.98251 1.21022 0.99067 0.95062 0.97503 0.92969 0.94718 0.95788 0.77023 0.77312 0.91841 0.91736 0.89628 0.90072 0.90958 0.86035 0.86002 0.90955 0.90196 0.86681 0.86847 0.86921 0.86660 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -13.72 8.84 -34.44 -0.30 -14.03 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.56 4.50 -27.88 -0.13 0.44 16 10 C 0.20 4.19 2.12 -69.09 -0.15 4.04 16 11 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 12 N -0.72 -13.11 4.02 -59.82 -0.24 -13.35 16 13 C 0.70 12.88 8.52 -86.91 -0.74 12.13 16 14 O -0.60 -13.26 16.01 5.30 0.08 -13.18 16 15 N -0.75 -10.31 5.51 -65.23 -0.36 -10.67 16 16 C 0.15 1.84 4.99 -4.05 -0.02 1.82 16 17 C -0.11 -0.97 3.16 -88.90 -0.28 -1.25 16 18 C -0.10 -0.94 6.33 -26.83 -0.17 -1.11 16 19 C -0.16 -1.43 10.78 -35.70 -0.38 -1.82 16 20 C -0.17 -1.42 10.77 -35.70 -0.38 -1.80 16 21 C -0.09 -0.77 6.38 -26.82 -0.17 -0.94 16 22 C -0.07 -1.33 4.91 -104.63 -0.51 -1.84 16 23 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 24 C -0.13 -1.92 10.05 -39.58 -0.40 -2.31 16 25 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 26 C -0.12 -1.91 10.05 -39.59 -0.40 -2.31 16 27 C -0.11 -1.93 9.67 -39.58 -0.38 -2.32 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.40 6.57 8.62 -40.82 -0.35 6.22 16 32 H 0.39 4.40 8.49 -40.82 -0.35 4.06 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.86 7.92 -51.93 -0.41 0.45 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.86 7.74 -51.93 -0.40 0.46 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 42 H 0.12 1.84 7.71 -52.48 -0.40 1.44 16 43 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.12 2.06 8.04 -52.49 -0.42 1.64 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -31.96 384.61 -11.61 -43.58 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -7.33 Total: 10.99 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -5.28 Total: -14.35 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.14 Total: -48.90 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.96 -11.61 -43.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599014474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.797 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds