Wall clock time and date at job start Fri Apr 10 2020 23:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86791 * 119.99950 * 2 1 4 4 H 1.48498 * 109.47690 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47328 * 120.00622 * 3 2 1 6 6 H 1.48504 * 109.47177 * 239.99835 * 3 2 1 7 7 C 1.40277 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99602 * 160.94300 * 7 2 1 9 9 C 1.40892 * 119.99993 * 340.94173 * 7 2 1 10 10 C 1.40709 * 120.32698 * 325.84525 * 9 7 2 11 11 C 1.37600 * 119.88058 * 180.02562 * 10 9 7 12 12 C 1.38826 * 120.56680 * 0.02562 * 11 10 9 13 13 C 1.38217 * 120.68006 * 359.97438 * 12 11 10 14 14 C 1.39232 * 120.09197 * 359.71249 * 13 12 11 15 15 C 1.47428 * 120.28208 * 180.28466 * 14 13 12 16 16 O 1.21618 * 119.99913 * 177.04861 * 15 14 13 17 17 N 1.34774 * 120.00477 * 357.04743 * 15 14 13 18 18 C 1.46497 * 120.00234 * 180.02562 * 17 15 14 19 19 C 1.53117 * 109.52256 * 274.87182 * 18 17 15 20 20 C 1.53041 * 109.27345 * 182.50397 * 19 18 17 21 21 N 1.46843 * 109.57732 * 59.08768 * 20 19 18 22 22 C 1.46899 * 111.00446 * 174.19211 * 21 20 19 23 23 C 1.53003 * 117.49743 * 12.82645 * 22 21 20 24 24 C 1.53001 * 117.49634 * 304.20581 * 22 21 20 25 25 C 1.46855 * 111.19716 * 298.28763 * 21 20 19 26 26 C 1.53030 * 109.52286 * 61.74139 * 25 21 20 27 27 H 0.96993 * 120.00043 * 174.76075 * 1 2 3 28 28 H 1.07999 * 120.06050 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.71280 * 179.97438 * 11 10 9 30 30 H 1.07997 * 119.65714 * 179.97438 * 12 11 10 31 31 H 1.07997 * 119.95779 * 180.02562 * 13 12 11 32 32 H 0.97004 * 119.99726 * 359.97438 * 17 15 14 33 33 H 1.09005 * 109.52554 * 35.00300 * 18 17 15 34 34 H 1.08997 * 109.50306 * 302.37902 * 19 18 17 35 35 H 1.08998 * 109.50030 * 62.49934 * 19 18 17 36 36 H 1.08995 * 109.41180 * 299.06635 * 20 19 18 37 37 H 1.09002 * 109.45269 * 179.12682 * 20 19 18 38 38 H 1.08997 * 115.55627 * 158.53865 * 22 21 20 39 39 H 1.09001 * 117.49454 * 0.02562 * 23 22 21 40 40 H 1.09006 * 117.49738 * 145.02109 * 23 22 21 41 41 H 1.09003 * 117.50076 * 214.97647 * 24 22 21 42 42 H 1.09000 * 117.50170 * 0.02562 * 24 22 21 43 43 H 1.08999 * 109.45784 * 301.72440 * 25 21 20 44 44 H 1.08999 * 109.45151 * 181.75269 * 25 21 20 45 45 H 1.09001 * 109.50781 * 180.88071 * 26 25 21 46 46 H 1.09003 * 109.53729 * 60.78196 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2754 2.7465 0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0941 1.6963 -1.2125 7 6 2.0077 -1.2149 -0.0005 8 1 3.0432 -1.2404 -0.3059 9 6 1.3610 -2.4017 0.3973 10 6 0.3813 -2.3729 1.4069 11 6 -0.2441 -3.5376 1.7887 12 6 0.0833 -4.7449 1.1864 13 6 1.0421 -4.8000 0.1925 14 6 1.6877 -3.6374 -0.2200 15 6 2.7066 -3.6905 -1.2842 16 8 3.2286 -2.6650 -1.6779 17 7 3.0597 -4.8753 -1.8208 18 6 4.0726 -4.9281 -2.8778 19 6 3.4087 -4.6814 -4.2354 20 6 4.4604 -4.7996 -5.3409 21 7 5.0634 -6.1380 -5.3053 22 6 5.9782 -6.3336 -6.4380 23 6 6.3803 -5.0963 -7.2431 24 6 5.4162 -6.1206 -7.8449 25 6 5.7479 -6.3783 -4.0285 26 6 4.7345 -6.3089 -2.8840 27 1 -0.4850 -0.8365 -0.0767 28 1 0.1211 -1.4385 1.8818 29 1 -0.9953 -3.5125 2.5641 30 1 -0.4165 -5.6502 1.4978 31 1 1.2874 -5.7454 -0.2684 32 1 2.6436 -5.6933 -1.5065 33 1 4.8278 -4.1630 -2.6972 34 1 2.6264 -5.4227 -4.3979 35 1 2.9733 -3.6823 -4.2513 36 1 5.2347 -4.0482 -5.1861 37 1 3.9879 -4.6398 -6.3100 38 1 6.7268 -7.1152 -6.3082 39 1 5.9664 -4.1371 -6.9321 40 1 7.3939 -5.0636 -7.6430 41 1 5.7953 -6.7616 -8.6408 42 1 4.3677 -5.8348 -7.9302 43 1 6.5162 -5.6195 -3.8799 44 1 6.2104 -7.3652 -4.0447 45 1 5.2454 -6.4718 -1.9350 46 1 3.9734 -7.0766 -3.0239 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600981307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:01 Heat of formation + Delta-G solvation = 7.195440 kcal Electronic energy + Delta-G solvation = -26088.459029 eV Core-core repulsion = 22556.881468 eV Total energy + Delta-G solvation = -3531.577562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.96675 -38.86314 -37.23364 -36.06272 -34.08365 -33.35812 -31.01564 -30.65234 -29.60399 -29.04157 -25.37272 -24.25809 -23.36532 -22.63033 -22.14256 -21.08212 -20.67983 -19.70913 -19.27311 -18.05373 -16.97175 -16.33637 -15.73022 -15.37648 -14.77091 -14.62900 -14.25690 -14.18855 -14.04936 -13.81598 -13.62976 -13.49311 -13.01049 -12.68559 -12.39215 -12.23030 -12.16737 -11.87121 -11.76841 -11.50332 -11.15866 -11.12606 -11.01144 -10.86212 -10.77026 -10.73198 -10.44676 -10.41145 -10.36569 -10.14376 -9.60183 -9.07669 -8.52113 -8.35417 -8.29062 -7.78800 -7.60099 -7.13912 -4.45997 2.24679 2.74086 3.20194 3.30844 3.40697 3.42436 3.78452 3.92824 4.04009 4.07110 4.55474 4.63859 4.67602 4.75903 4.80800 4.91254 5.10720 5.20464 5.30775 5.42856 5.45455 5.48626 5.54198 5.56745 5.65684 5.69781 5.80293 5.87397 5.90098 5.95989 6.01955 6.06558 6.14664 6.27426 6.41037 6.55858 6.72130 6.90462 6.94930 6.99591 7.15961 7.28684 7.49837 7.61443 7.72757 7.89396 8.09760 8.21703 8.39589 8.73819 8.86469 9.37726 10.04619 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.003471 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.626819 B = 8065.369633 C = 9409.537445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.031 3.969 3 Si 1.070 2.930 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.466 4.466 8 H 0.105 0.895 9 C 0.121 3.879 10 C -0.202 4.202 11 C -0.076 4.076 12 C -0.260 4.260 13 C -0.043 4.043 14 C -0.265 4.265 15 C 0.564 3.436 16 O -0.538 6.538 17 N -0.744 5.744 18 C 0.151 3.849 19 C -0.127 4.127 20 C 0.055 3.945 21 N -0.507 5.507 22 C 0.024 3.976 23 C -0.223 4.223 24 C -0.172 4.172 25 C 0.063 3.937 26 C -0.123 4.123 27 H 0.298 0.702 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.391 0.609 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.048 -10.937 -9.220 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.190 4.190 3 Si 0.893 3.107 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.493 4.493 8 H 0.123 0.877 9 C 0.116 3.884 10 C -0.221 4.221 11 C -0.095 4.095 12 C -0.279 4.279 13 C -0.062 4.062 14 C -0.270 4.270 15 C 0.358 3.642 16 O -0.416 6.416 17 N -0.397 5.397 18 C 0.045 3.955 19 C -0.166 4.166 20 C -0.073 4.073 21 N -0.229 5.229 22 C -0.086 4.086 23 C -0.262 4.262 24 C -0.210 4.210 25 C -0.065 4.065 26 C -0.162 4.162 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.225 0.775 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.056 0.944 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.781 -8.864 -9.458 15.657 hybrid contribution 0.416 -1.703 0.104 1.756 sum 9.198 -10.567 -9.353 16.844 Atomic orbital electron populations 1.70386 1.08250 1.34323 1.28785 1.27261 0.95695 1.04668 0.91421 0.83563 0.75545 0.73342 0.78221 1.19936 1.19969 1.19827 1.21176 1.01617 0.91892 1.34644 0.87707 1.17505 0.89715 0.92078 0.89076 1.21256 1.02995 0.97102 1.00717 1.20744 0.97639 0.93211 0.97881 1.20243 1.05825 0.96699 1.05167 1.20721 0.94809 0.95383 0.95283 1.19405 1.07831 0.95292 1.04480 1.18380 0.82019 0.82209 0.81554 1.90671 1.55043 1.32975 1.62943 1.46056 1.43621 1.09670 1.40376 1.20749 0.90870 0.96864 0.87011 1.22016 0.98004 1.02940 0.93636 1.22183 0.96941 0.88491 0.99635 1.61838 1.31136 1.28537 1.01437 1.22632 0.97647 0.99226 0.89089 1.23574 1.00449 0.95827 1.06370 1.23057 0.99544 1.02557 0.95846 1.22013 0.95176 1.01042 0.88305 1.21871 0.98978 0.97437 0.97896 0.88798 0.87553 0.88900 0.88917 0.89101 0.77488 0.90221 0.91213 0.90539 0.94132 0.90599 0.86425 0.88170 0.88925 0.88576 0.88530 0.94390 0.90416 0.90805 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.35 12.57 55.56 0.70 -20.65 16 2 C 0.03 0.81 5.04 -17.29 -0.09 0.72 16 3 Si 1.07 22.60 29.98 -169.99 -5.10 17.51 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.47 -12.83 7.66 -37.81 -0.29 -13.12 16 8 H 0.11 3.01 5.91 -52.49 -0.31 2.70 16 9 C 0.12 3.21 5.18 -106.54 -0.55 2.66 16 10 C -0.20 -5.03 7.86 -38.88 -0.31 -5.34 16 11 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 12 C -0.26 -5.45 10.03 -39.37 -0.39 -5.84 16 13 C -0.04 -0.91 9.53 -39.22 -0.37 -1.28 16 14 C -0.27 -6.42 5.92 -104.37 -0.62 -7.04 16 15 C 0.56 12.94 7.70 -12.52 -0.10 12.84 16 16 O -0.54 -14.05 13.22 5.26 0.07 -13.98 16 17 N -0.74 -13.02 5.03 -54.76 -0.28 -13.30 16 18 C 0.15 2.28 2.52 -67.81 -0.17 2.11 16 19 C -0.13 -1.85 5.68 -26.65 -0.15 -2.00 16 20 C 0.06 0.68 4.12 -3.83 -0.02 0.66 16 21 N -0.51 -5.61 4.88 -226.69 -1.11 -6.72 16 22 C 0.02 0.22 6.11 -67.71 -0.41 -0.19 16 23 C -0.22 -1.99 9.58 -26.73 -0.26 -2.25 16 24 C -0.17 -1.49 9.94 -26.73 -0.27 -1.75 16 25 C 0.06 0.65 5.44 -3.83 -0.02 0.63 16 26 C -0.12 -1.42 5.57 -26.65 -0.15 -1.57 16 27 H 0.30 8.20 6.54 -40.82 -0.27 7.94 16 28 H 0.11 2.71 6.93 -52.49 -0.36 2.35 16 29 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.09 1.58 6.41 -52.49 -0.34 1.24 16 32 H 0.39 5.97 6.64 -40.82 -0.27 5.70 16 33 H 0.08 1.39 7.58 -51.93 -0.39 0.99 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.04 0.52 7.12 -51.93 -0.37 0.15 16 37 H 0.08 0.88 6.43 -51.93 -0.33 0.55 16 38 H 0.12 0.95 8.04 -51.93 -0.42 0.53 16 39 H 0.10 0.99 5.97 -51.93 -0.31 0.68 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.90 7.23 -51.93 -0.38 0.53 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -29.52 360.84 -11.59 -41.12 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.77 Total: 13.43 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -4.56 Total: -22.84 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: -0.68 Total: -40.67 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.07 Total: -13.98 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.10 Total: 17.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.52 -11.59 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600981307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.312 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds