Wall clock time and date at job start Fri Apr 10 2020 23:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86791 * 119.99950 * 2 1 4 4 H 1.48498 * 109.47690 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47328 * 120.00622 * 3 2 1 6 6 H 1.48504 * 109.47177 * 239.99835 * 3 2 1 7 7 C 1.40277 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99602 * 160.94300 * 7 2 1 9 9 C 1.40892 * 119.99993 * 340.94173 * 7 2 1 10 10 C 1.40709 * 120.32698 * 325.84525 * 9 7 2 11 11 C 1.37600 * 119.88058 * 180.02562 * 10 9 7 12 12 C 1.38826 * 120.56680 * 0.02562 * 11 10 9 13 13 C 1.38217 * 120.68006 * 359.97438 * 12 11 10 14 14 C 1.39232 * 120.09197 * 359.71249 * 13 12 11 15 15 C 1.47428 * 120.28208 * 180.28466 * 14 13 12 16 16 O 1.21618 * 119.99913 * 177.04861 * 15 14 13 17 17 N 1.34774 * 120.00477 * 357.04743 * 15 14 13 18 18 C 1.46497 * 120.00234 * 180.02562 * 17 15 14 19 19 C 1.53117 * 109.52256 * 274.87182 * 18 17 15 20 20 C 1.53041 * 109.27345 * 182.50397 * 19 18 17 21 21 N 1.46843 * 109.57732 * 59.08768 * 20 19 18 22 22 C 1.46899 * 111.00446 * 174.19211 * 21 20 19 23 23 C 1.53003 * 117.49743 * 12.82645 * 22 21 20 24 24 C 1.53001 * 117.49634 * 304.20581 * 22 21 20 25 25 C 1.46855 * 111.19716 * 298.28763 * 21 20 19 26 26 C 1.53030 * 109.52286 * 61.74139 * 25 21 20 27 27 H 0.96993 * 120.00043 * 174.76075 * 1 2 3 28 28 H 1.07999 * 120.06050 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.71280 * 179.97438 * 11 10 9 30 30 H 1.07997 * 119.65714 * 179.97438 * 12 11 10 31 31 H 1.07997 * 119.95779 * 180.02562 * 13 12 11 32 32 H 0.97004 * 119.99726 * 359.97438 * 17 15 14 33 33 H 1.09005 * 109.52554 * 35.00300 * 18 17 15 34 34 H 1.08997 * 109.50306 * 302.37902 * 19 18 17 35 35 H 1.08998 * 109.50030 * 62.49934 * 19 18 17 36 36 H 1.08995 * 109.41180 * 299.06635 * 20 19 18 37 37 H 1.09002 * 109.45269 * 179.12682 * 20 19 18 38 38 H 1.08997 * 115.55627 * 158.53865 * 22 21 20 39 39 H 1.09001 * 117.49454 * 0.02562 * 23 22 21 40 40 H 1.09006 * 117.49738 * 145.02109 * 23 22 21 41 41 H 1.09003 * 117.50076 * 214.97647 * 24 22 21 42 42 H 1.09000 * 117.50170 * 0.02562 * 24 22 21 43 43 H 1.08999 * 109.45784 * 301.72440 * 25 21 20 44 44 H 1.08999 * 109.45151 * 181.75269 * 25 21 20 45 45 H 1.09001 * 109.50781 * 180.88071 * 26 25 21 46 46 H 1.09003 * 109.53729 * 60.78196 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2754 2.7465 0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0941 1.6963 -1.2125 7 6 2.0077 -1.2149 -0.0005 8 1 3.0432 -1.2404 -0.3059 9 6 1.3610 -2.4017 0.3973 10 6 0.3813 -2.3729 1.4069 11 6 -0.2441 -3.5376 1.7887 12 6 0.0833 -4.7449 1.1864 13 6 1.0421 -4.8000 0.1925 14 6 1.6877 -3.6374 -0.2200 15 6 2.7066 -3.6905 -1.2842 16 8 3.2286 -2.6650 -1.6779 17 7 3.0597 -4.8753 -1.8208 18 6 4.0726 -4.9281 -2.8778 19 6 3.4087 -4.6814 -4.2354 20 6 4.4604 -4.7996 -5.3409 21 7 5.0634 -6.1380 -5.3053 22 6 5.9782 -6.3336 -6.4380 23 6 6.3803 -5.0963 -7.2431 24 6 5.4162 -6.1206 -7.8449 25 6 5.7479 -6.3783 -4.0285 26 6 4.7345 -6.3089 -2.8840 27 1 -0.4850 -0.8365 -0.0767 28 1 0.1211 -1.4385 1.8818 29 1 -0.9953 -3.5125 2.5641 30 1 -0.4165 -5.6502 1.4978 31 1 1.2874 -5.7454 -0.2684 32 1 2.6436 -5.6933 -1.5065 33 1 4.8278 -4.1630 -2.6972 34 1 2.6264 -5.4227 -4.3979 35 1 2.9733 -3.6823 -4.2513 36 1 5.2347 -4.0482 -5.1861 37 1 3.9879 -4.6398 -6.3100 38 1 6.7268 -7.1152 -6.3082 39 1 5.9664 -4.1371 -6.9321 40 1 7.3939 -5.0636 -7.6430 41 1 5.7953 -6.7616 -8.6408 42 1 4.3677 -5.8348 -7.9302 43 1 6.5162 -5.6195 -3.8799 44 1 6.2104 -7.3652 -4.0447 45 1 5.2454 -6.4718 -1.9350 46 1 3.9734 -7.0766 -3.0239 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600981307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:00 Heat of formation + Delta-G solvation = -10.595201 kcal Electronic energy + Delta-G solvation = -26089.230489 eV Core-core repulsion = 22556.881468 eV Total energy + Delta-G solvation = -3532.349022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20987 -40.30161 -38.85598 -37.31872 -35.89870 -34.76185 -32.34109 -31.88270 -31.37754 -30.58280 -27.20568 -25.52212 -24.48644 -23.73777 -23.28779 -22.76448 -21.79137 -21.19249 -20.55827 -19.88113 -18.17950 -17.74347 -16.97633 -16.53567 -16.40313 -16.06683 -15.81895 -15.71979 -15.40744 -15.19633 -14.96450 -14.78286 -14.45920 -14.18154 -13.98048 -13.71631 -13.31635 -13.12855 -12.92913 -12.72368 -12.61224 -12.57625 -12.48650 -12.06163 -12.02857 -11.97728 -11.94245 -11.69365 -11.54482 -11.41524 -11.19190 -10.97368 -10.34095 -9.96490 -9.61268 -9.49582 -9.15310 -9.10328 -6.46921 0.40189 0.90308 1.44634 1.60257 1.74825 2.25390 2.29714 2.39110 2.63006 2.73900 3.09151 3.55402 3.64723 3.78096 3.89198 4.00387 4.04255 4.13167 4.20651 4.22985 4.24501 4.31351 4.42385 4.49596 4.58796 4.62714 4.74109 4.76944 4.78276 4.82331 4.87831 4.93407 5.05527 5.07976 5.12966 5.14031 5.22682 5.25715 5.42801 5.61644 5.66972 5.72043 5.89994 5.96696 5.99041 6.11963 6.20060 6.33383 6.69716 6.85827 6.93455 7.62804 8.03778 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.003471 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.626819 B = 8065.369633 C = 9409.537445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C -0.003 4.003 3 Si 1.115 2.885 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.080 0.920 9 C 0.095 3.905 10 C -0.227 4.227 11 C -0.073 4.073 12 C -0.244 4.244 13 C -0.041 4.041 14 C -0.283 4.283 15 C 0.558 3.442 16 O -0.579 6.579 17 N -0.722 5.722 18 C 0.148 3.852 19 C -0.120 4.120 20 C 0.066 3.934 21 N -0.511 5.511 22 C 0.017 3.983 23 C -0.226 4.226 24 C -0.168 4.168 25 C 0.063 3.937 26 C -0.112 4.112 27 H 0.282 0.718 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.406 0.594 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.030 0.970 37 H 0.081 0.919 38 H 0.139 0.861 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.086 0.914 43 H 0.032 0.968 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.553 -14.565 -9.539 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.218 4.218 3 Si 0.932 3.068 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.098 0.902 9 C 0.091 3.909 10 C -0.246 4.246 11 C -0.091 4.091 12 C -0.263 4.263 13 C -0.060 4.060 14 C -0.287 4.287 15 C 0.352 3.648 16 O -0.461 6.461 17 N -0.375 5.375 18 C 0.043 3.957 19 C -0.159 4.159 20 C -0.063 4.063 21 N -0.233 5.233 22 C -0.092 4.092 23 C -0.265 4.265 24 C -0.205 4.205 25 C -0.065 4.065 26 C -0.150 4.150 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.142 0.858 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.243 0.757 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.156 0.844 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.133 0.867 42 H 0.105 0.895 43 H 0.050 0.950 44 H 0.124 0.876 45 H 0.103 0.897 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.286 -12.561 -9.778 18.429 hybrid contribution 0.237 -0.880 0.192 0.931 sum 9.523 -13.441 -9.587 19.059 Atomic orbital electron populations 1.70497 1.08607 1.33077 1.32076 1.28450 0.95850 1.07340 0.90142 0.83036 0.74812 0.70199 0.78737 1.18771 1.18322 1.19809 1.21097 1.01032 0.93613 1.38186 0.90200 1.17904 0.90399 0.92999 0.89549 1.21213 1.04236 0.97830 1.01330 1.21164 0.97269 0.92642 0.98033 1.20820 1.04441 0.97647 1.03390 1.21161 0.93835 0.95954 0.95025 1.19825 1.08327 0.95862 1.04725 1.18437 0.81740 0.83108 0.81559 1.90655 1.56419 1.34919 1.64095 1.45824 1.43289 1.08482 1.39931 1.20919 0.89726 0.98778 0.86238 1.21892 0.98805 1.00867 0.94381 1.22002 0.96070 0.89453 0.98735 1.61847 1.32066 1.26955 1.02442 1.22820 0.97924 0.99877 0.88616 1.23571 1.01271 0.95109 1.06593 1.23117 0.99000 1.02402 0.96005 1.22082 0.94549 1.02408 0.87440 1.21820 0.99395 0.94616 0.99192 0.90525 0.89314 0.85769 0.84511 0.84637 0.75716 0.93085 0.90556 0.94273 0.95225 0.90109 0.84369 0.89744 0.87575 0.86669 0.89512 0.95010 0.87559 0.89687 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.48 12.57 21.88 0.28 -46.20 16 2 C 0.00 -0.15 5.04 85.37 0.43 0.28 16 3 Si 1.11 47.98 29.98 68.60 2.06 50.03 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.51 -30.04 7.66 23.42 0.18 -29.86 16 8 H 0.08 4.97 5.91 -2.91 -0.02 4.95 16 9 C 0.10 5.29 5.18 -21.11 -0.11 5.18 16 10 C -0.23 -11.61 7.86 22.72 0.18 -11.43 16 11 C -0.07 -3.08 10.01 22.26 0.22 -2.85 16 12 C -0.24 -9.26 10.03 22.41 0.22 -9.04 16 13 C -0.04 -1.61 9.53 22.50 0.21 -1.40 16 14 C -0.28 -13.79 5.92 -19.70 -0.12 -13.90 16 15 C 0.56 26.28 7.70 86.66 0.67 26.95 16 16 O -0.58 -32.19 13.22 -4.09 -0.05 -32.25 16 17 N -0.72 -24.78 5.03 -445.40 -2.24 -27.02 16 18 C 0.15 4.45 2.52 45.07 0.11 4.56 16 19 C -0.12 -3.56 5.68 30.65 0.17 -3.39 16 20 C 0.07 1.60 4.12 86.33 0.36 1.96 16 21 N -0.51 -10.23 4.88 -871.12 -4.25 -14.48 16 22 C 0.02 0.27 6.11 44.92 0.27 0.54 16 23 C -0.23 -3.70 9.58 30.60 0.29 -3.41 16 24 C -0.17 -2.53 9.94 30.60 0.30 -2.23 16 25 C 0.06 1.14 5.44 86.32 0.47 1.61 16 26 C -0.11 -2.29 5.57 30.65 0.17 -2.12 16 27 H 0.28 16.51 6.54 -92.71 -0.61 15.91 16 28 H 0.09 4.76 6.93 -2.91 -0.02 4.74 16 29 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.14 4.04 6.41 -2.91 -0.02 4.02 16 32 H 0.41 11.28 6.64 -92.71 -0.62 10.66 16 33 H 0.05 1.85 7.58 -2.38 -0.02 1.83 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.03 0.78 7.12 -2.39 -0.02 0.77 16 37 H 0.08 1.88 6.43 -2.39 -0.02 1.86 16 38 H 0.14 1.70 8.04 -2.39 -0.02 1.68 16 39 H 0.08 1.66 5.97 -2.39 -0.01 1.64 16 40 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.09 1.49 7.23 -2.39 -0.02 1.48 16 43 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.11 1.40 8.07 -2.39 -0.02 1.38 16 45 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -69.92 360.84 0.37 -69.55 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: 0.54 Total: 38.91 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 4.05 Total: -38.55 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -6.21 Total: -87.71 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.05 Total: -32.25 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.06 Total: 50.03 kcal Total: -69.92 0.37 -69.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600981307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.955 kcal (2) G-P(sol) polarization free energy of solvation -69.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds