Wall clock time and date at job start Fri Apr 10 2020 23:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86801 * 120.00147 * 2 1 4 4 H 1.48496 * 109.47329 * 273.63728 * 3 2 1 5 5 H 1.48503 * 109.47227 * 33.63788 * 3 2 1 6 6 H 1.48495 * 109.47138 * 153.63443 * 3 2 1 7 7 C 1.40274 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99925 * 339.69804 * 7 2 1 9 9 C 1.40889 * 120.00375 * 159.69885 * 7 2 1 10 10 C 1.40705 * 120.32348 * 332.58205 * 9 7 2 11 11 C 1.37607 * 119.88049 * 180.25603 * 10 9 7 12 12 C 1.38821 * 120.56782 * 359.73653 * 11 10 9 13 13 C 1.38221 * 120.67783 * 359.97438 * 12 11 10 14 14 C 1.39229 * 120.09212 * 0.02562 * 13 12 11 15 15 C 1.47430 * 120.28174 * 179.97438 * 14 13 12 16 16 O 1.21606 * 119.99795 * 234.11610 * 15 14 13 17 17 N 1.34779 * 120.00239 * 54.11398 * 15 14 13 18 18 C 1.47083 * 120.88035 * 175.42667 * 17 15 14 19 19 C 1.53236 * 108.52026 * 231.20784 * 18 17 15 20 20 N 1.46902 * 109.34071 * 306.17036 * 19 18 17 21 21 C 1.46897 * 111.00031 * 187.25329 * 20 19 18 22 22 C 1.53002 * 109.47162 * 169.99932 * 21 20 19 23 23 C 1.52997 * 117.49994 * 174.99903 * 22 21 20 24 24 C 1.52996 * 60.00122 * 107.49283 * 23 22 21 25 25 C 1.46899 * 111.26881 * 63.10717 * 20 19 18 26 26 C 1.47080 * 120.88171 * 355.45511 * 17 15 14 27 27 H 0.96997 * 119.99344 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.06665 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.71196 * 179.76277 * 11 10 9 30 30 H 1.08000 * 119.65981 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.95648 * 179.97438 * 13 12 11 32 32 H 1.09002 * 109.62653 * 111.49922 * 18 17 15 33 33 H 1.08995 * 109.62880 * 350.91852 * 18 17 15 34 34 H 1.08999 * 109.49444 * 186.21209 * 19 18 17 35 35 H 1.09001 * 109.51566 * 66.14621 * 19 18 17 36 36 H 1.09000 * 109.47093 * 50.00003 * 21 20 19 37 37 H 1.08999 * 109.47298 * 290.00164 * 21 20 19 38 38 H 1.08997 * 115.55991 * 29.31405 * 22 21 20 39 39 H 1.09009 * 117.49926 * 0.02562 * 23 22 21 40 40 H 1.08999 * 117.50247 * 214.97950 * 23 22 21 41 41 H 1.09004 * 117.50214 * 107.48683 * 24 23 22 42 42 H 1.09000 * 117.49972 * 252.48951 * 24 23 22 43 43 H 1.08999 * 109.49347 * 56.84946 * 25 20 19 44 44 H 1.08999 * 109.49595 * 176.93378 * 25 20 19 45 45 H 1.09004 * 109.62642 * 248.50264 * 26 17 15 46 46 H 1.08994 * 109.62625 * 8.88134 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4110 2.0908 -1.3972 5 1 1.4784 2.6293 0.7756 6 1 3.5742 1.4192 0.6217 7 6 2.0077 -1.2148 0.0005 8 1 1.5180 -2.1209 0.3255 9 6 3.3509 -1.2530 -0.4228 10 6 3.8313 -0.3082 -1.3482 11 6 5.1436 -0.3572 -1.7594 12 6 6.0026 -1.3290 -1.2648 13 6 5.5570 -2.2648 -0.3503 14 6 4.2346 -2.2411 0.0848 15 6 3.7547 -3.2376 1.0596 16 8 2.7753 -3.9126 0.8069 17 7 4.4015 -3.4004 2.2308 18 6 3.8831 -4.3161 3.2584 19 6 3.8098 -3.5619 4.5903 20 7 5.1219 -2.9724 4.8884 21 6 5.1423 -2.3873 6.2357 22 6 6.5780 -2.0098 6.6061 23 6 6.7960 -1.2747 7.9301 24 6 7.2173 -2.7388 7.7896 25 6 5.5013 -1.9773 3.8766 26 6 5.6439 -2.6666 2.5155 27 1 -0.4849 0.8401 -0.0004 28 1 3.1701 0.4513 -1.7386 29 1 5.5083 0.3670 -2.4727 30 1 7.0296 -1.3541 -1.5979 31 1 6.2352 -3.0161 0.0266 32 1 4.5520 -5.1710 3.3581 33 1 2.8874 -4.6578 2.9758 34 1 3.5329 -4.2540 5.3855 35 1 3.0631 -2.7709 4.5202 36 1 4.7611 -3.1139 6.9532 37 1 4.5159 -1.4955 6.2541 38 1 7.2248 -1.7434 5.7702 39 1 5.9166 -1.0604 8.5375 40 1 7.5863 -0.5248 7.9652 41 1 8.2847 -2.9521 7.7322 42 1 6.6153 -3.4874 8.3047 43 1 4.7311 -1.2084 3.8159 44 1 6.4511 -1.5202 4.1541 45 1 6.4821 -3.3629 2.5437 46 1 5.8141 -1.9201 1.7398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601002746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:30 Heat of formation + Delta-G solvation = 24.300094 kcal Electronic energy + Delta-G solvation = -26674.011707 eV Core-core repulsion = 23143.175858 eV Total energy + Delta-G solvation = -3530.835848 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.82909 -38.46541 -37.26766 -36.46850 -34.03090 -33.61788 -31.32031 -30.58460 -29.84684 -28.26498 -25.57754 -24.67183 -23.64175 -22.57078 -22.40574 -21.36171 -20.47209 -20.21404 -18.53689 -17.46512 -16.88501 -16.13833 -15.64325 -15.30966 -15.08581 -14.94658 -14.76524 -14.33732 -14.10197 -13.88249 -13.77743 -13.59277 -12.91939 -12.71551 -12.62900 -12.15219 -12.01762 -11.96185 -11.71119 -11.66484 -11.59418 -11.18095 -11.13899 -10.89747 -10.87520 -10.72346 -10.45357 -10.42337 -10.11998 -10.09397 -9.84557 -9.23883 -8.75015 -8.45075 -7.98961 -7.76921 -7.74248 -7.08925 -4.59977 2.24273 2.57358 3.01090 3.10070 3.20711 3.48137 3.58425 3.76545 3.85828 3.99196 4.38274 4.54741 4.75146 4.83141 5.05656 5.13997 5.21762 5.28136 5.31528 5.43115 5.44483 5.49140 5.58590 5.63459 5.70199 5.71762 5.78234 5.85607 5.92019 5.93825 6.00082 6.08833 6.10839 6.14284 6.26918 6.36521 6.53305 6.75696 6.98016 7.03932 7.04985 7.09948 7.24300 7.43909 7.57952 7.74808 7.98393 8.12048 8.31283 8.56824 8.71673 9.12535 9.90660 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.004185 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.863460 B = 6688.366108 C = 6921.448708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.084 3.916 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.429 4.429 8 H 0.110 0.890 9 C 0.125 3.875 10 C -0.239 4.239 11 C -0.062 4.062 12 C -0.257 4.257 13 C -0.044 4.044 14 C -0.246 4.246 15 C 0.588 3.412 16 O -0.544 6.544 17 N -0.620 5.620 18 C 0.121 3.879 19 C 0.042 3.958 20 N -0.534 5.534 21 C 0.085 3.915 22 C -0.145 4.145 23 C -0.184 4.184 24 C -0.175 4.175 25 C 0.038 3.962 26 C 0.112 3.888 27 H 0.288 0.712 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.042 0.958 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.505 -0.760 12.207 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.138 4.138 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.456 4.456 8 H 0.128 0.872 9 C 0.120 3.880 10 C -0.258 4.258 11 C -0.080 4.080 12 C -0.276 4.276 13 C -0.063 4.063 14 C -0.250 4.250 15 C 0.381 3.619 16 O -0.421 6.421 17 N -0.355 5.355 18 C -0.002 4.002 19 C -0.086 4.086 20 N -0.259 5.259 21 C -0.042 4.042 22 C -0.163 4.163 23 C -0.222 4.222 24 C -0.212 4.212 25 C -0.091 4.091 26 C -0.012 4.012 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.987 -1.431 12.062 16.378 hybrid contribution -0.313 1.482 0.064 1.516 sum 10.674 0.051 12.125 16.154 Atomic orbital electron populations 1.69640 1.08411 1.30664 1.31935 1.26389 0.94733 1.02012 0.90704 0.86343 0.81224 0.79474 0.79157 1.19219 1.21662 1.16705 1.19924 0.93899 0.97000 1.34772 0.87206 1.17382 0.92020 0.89588 0.88974 1.21053 0.96170 1.04223 1.04316 1.20705 0.93611 0.96563 0.97166 1.20244 0.98814 1.01549 1.07028 1.20693 0.93410 0.96361 0.95829 1.19295 0.94355 1.04737 1.06647 1.18419 0.81480 0.81475 0.80544 1.90675 1.27108 1.47100 1.77225 1.48097 1.26131 1.44831 1.16475 1.21499 1.00924 0.91927 0.85880 1.22487 0.89494 0.98717 0.97915 1.61942 1.28866 1.33531 1.01573 1.21651 0.94167 0.97851 0.90567 1.22300 0.97647 1.04114 0.92232 1.22971 1.03375 0.95340 1.00473 1.22973 1.01118 0.94778 1.02287 1.22574 1.01094 0.93462 0.91944 1.21921 0.86454 0.96567 0.96231 0.90089 0.87805 0.88651 0.88505 0.88391 0.91654 0.88914 0.90071 0.94115 0.90780 0.94461 0.87285 0.88983 0.88873 0.89020 0.88933 0.93992 0.89812 0.91663 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.80 13.92 55.56 0.77 -20.03 16 2 C 0.08 2.19 5.39 -17.30 -0.09 2.09 16 3 Si 0.91 20.21 24.54 -169.99 -4.17 16.04 16 4 H -0.27 -5.68 6.58 56.52 0.37 -5.31 16 5 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.24 -5.46 6.98 56.52 0.39 -5.06 16 7 C -0.43 -11.91 8.93 -37.81 -0.34 -12.25 16 8 H 0.11 3.39 6.33 -52.48 -0.33 3.06 16 9 C 0.12 3.19 5.17 -106.54 -0.55 2.64 16 10 C -0.24 -5.65 7.28 -38.88 -0.28 -5.93 16 11 C -0.06 -1.29 10.01 -39.60 -0.40 -1.68 16 12 C -0.26 -5.04 10.03 -39.37 -0.39 -5.43 16 13 C -0.04 -0.89 7.44 -39.22 -0.29 -1.18 16 14 C -0.25 -5.77 4.94 -104.37 -0.52 -6.29 16 15 C 0.59 13.61 6.63 -12.52 -0.08 13.53 16 16 O -0.54 -14.44 14.88 5.27 0.08 -14.37 16 17 N -0.62 -11.50 3.01 -173.73 -0.52 -12.02 16 18 C 0.12 1.93 6.58 -3.60 -0.02 1.90 16 19 C 0.04 0.58 5.62 -3.70 -0.02 0.56 16 20 N -0.53 -6.83 4.63 -234.32 -1.08 -7.92 16 21 C 0.09 0.93 5.24 -3.82 -0.02 0.91 16 22 C -0.14 -1.39 5.66 -90.62 -0.51 -1.90 16 23 C -0.18 -1.52 10.25 -26.73 -0.27 -1.79 16 24 C -0.17 -1.46 10.18 -26.73 -0.27 -1.73 16 25 C 0.04 0.52 5.47 -3.70 -0.02 0.50 16 26 C 0.11 1.73 5.64 -3.60 -0.02 1.71 16 27 H 0.29 6.82 8.29 -40.82 -0.34 6.49 16 28 H 0.10 2.44 4.52 -52.49 -0.24 2.20 16 29 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.10 1.72 7.35 -52.49 -0.39 1.33 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.63 7.09 -51.93 -0.37 1.26 16 34 H 0.08 0.92 7.99 -51.93 -0.41 0.51 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.74 7.70 -51.93 -0.40 0.34 16 37 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 38 H 0.11 1.09 6.33 -51.93 -0.33 0.77 16 39 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.98 6.12 -51.93 -0.32 0.66 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.10 1.73 4.87 -51.93 -0.25 1.48 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -29.67 357.97 -10.50 -40.17 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.85 Total: 7.08 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -4.11 Total: -14.36 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: -0.83 Total: -39.96 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.08 Total: -14.37 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.17 Total: 16.04 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.67 -10.50 -40.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601002746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.471 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds