Wall clock time and date at job start Fri Apr 10 2020 23:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30621 * 1 3 3 Si 1.86803 * 119.99983 * 2 1 4 4 H 1.48500 * 109.47247 * 269.99873 * 3 2 1 5 5 H 1.48495 * 109.47249 * 30.00035 * 3 2 1 6 6 H 1.48507 * 109.47247 * 150.00243 * 3 2 1 7 7 C 1.40281 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99874 * 171.71851 * 7 2 1 9 9 C 1.40890 * 119.99565 * 351.71802 * 7 2 1 10 10 C 1.40696 * 120.33077 * 323.33974 * 9 7 2 11 11 C 1.37601 * 119.88611 * 179.97438 * 10 9 7 12 12 C 1.38832 * 120.56519 * 359.97438 * 11 10 9 13 13 C 1.38217 * 120.67765 * 0.02562 * 12 11 10 14 14 C 1.39231 * 120.09193 * 359.97438 * 13 12 11 15 15 C 1.47429 * 120.28097 * 179.97438 * 14 13 12 16 16 O 1.21613 * 119.99666 * 184.76286 * 15 14 13 17 17 N 1.34771 * 120.00324 * 4.77110 * 15 14 13 18 18 C 1.46494 * 120.00403 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47461 * 179.97438 * 18 17 15 20 20 H 1.08994 * 110.28920 * 304.33139 * 19 18 17 21 21 C 1.54264 * 110.32035 * 66.45757 * 19 18 17 22 22 C 1.54384 * 105.05802 * 118.89668 * 21 19 18 23 23 N 1.48551 * 104.59623 * 23.85039 * 22 21 19 24 24 C 1.46902 * 111.00237 * 200.95757 * 23 22 21 25 25 C 1.53001 * 117.49781 * 254.42572 * 24 23 22 26 26 C 1.52996 * 117.49852 * 185.80219 * 24 23 22 27 27 C 1.48553 * 104.22588 * 320.51653 * 23 22 21 28 28 H 0.96994 * 120.00195 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.06290 * 0.02562 * 10 9 7 30 30 H 1.07993 * 119.72190 * 179.72522 * 11 10 9 31 31 H 1.08001 * 119.66232 * 179.97438 * 12 11 10 32 32 H 1.08004 * 119.95582 * 179.97438 * 13 12 11 33 33 H 0.97008 * 119.99646 * 359.97438 * 17 15 14 34 34 H 1.08995 * 109.47742 * 300.00040 * 18 17 15 35 35 H 1.09006 * 109.47115 * 60.00382 * 18 17 15 36 36 H 1.09000 * 110.32159 * 237.78894 * 21 19 18 37 37 H 1.08998 * 110.32453 * 359.97438 * 21 19 18 38 38 H 1.09001 * 110.40919 * 142.63192 * 22 21 19 39 39 H 1.08997 * 110.40746 * 265.06861 * 22 21 19 40 40 H 1.09003 * 115.54763 * 40.12937 * 24 23 22 41 41 H 1.08991 * 117.50422 * 359.97438 * 25 24 23 42 42 H 1.09005 * 117.49548 * 145.02063 * 25 24 23 43 43 H 1.09001 * 117.49561 * 214.97625 * 26 24 23 44 44 H 1.08997 * 117.50228 * 359.97438 * 26 24 23 45 45 H 1.08995 * 110.41157 * 280.70442 * 27 23 22 46 46 H 1.09003 * 110.41506 * 158.25509 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5379 1.4402 0.7000 7 6 2.0077 -1.2148 -0.0005 8 1 3.0792 -1.2196 -0.1353 9 6 1.3142 -2.4287 0.1747 10 6 0.2157 -2.4993 1.0509 11 6 -0.4553 -3.6894 1.2147 12 6 -0.0585 -4.8248 0.5214 13 6 1.0174 -4.7819 -0.3452 14 6 1.7163 -3.5922 -0.5320 15 6 2.8648 -3.5418 -1.4550 16 8 3.5248 -2.5247 -1.5493 17 7 3.1832 -4.6227 -2.1943 18 6 4.3240 -4.5725 -3.1119 19 6 4.4665 -5.9197 -3.8229 20 1 4.5525 -6.7249 -3.0933 21 6 3.2598 -6.1653 -4.7521 22 6 3.8615 -6.2791 -6.1693 23 7 5.2716 -6.6896 -5.9455 24 6 6.1048 -6.3691 -7.1121 25 6 6.5353 -7.5286 -8.0127 26 6 7.5568 -6.8510 -7.0971 27 6 5.6957 -5.9058 -4.7569 28 1 -0.4850 0.8400 0.0004 29 1 -0.1009 -1.6207 1.5935 30 1 -1.2954 -3.7417 1.8914 31 1 -0.5954 -5.7514 0.6614 32 1 1.3163 -5.6723 -0.8783 33 1 2.6568 -5.4341 -2.1188 34 1 4.1624 -3.7870 -3.8501 35 1 5.2336 -4.3610 -2.5495 36 1 2.7547 -7.0920 -4.4797 37 1 2.5659 -5.3263 -4.7013 38 1 3.3322 -7.0367 -6.7473 39 1 3.8221 -5.3157 -6.6774 40 1 5.8973 -5.4111 -7.5891 41 1 6.2008 -8.5292 -7.7394 42 1 6.6111 -7.3336 -9.0825 43 1 8.3045 -6.2103 -7.5645 44 1 7.8940 -7.4055 -6.2214 45 1 5.9434 -4.8840 -5.0441 46 1 6.5473 -6.3823 -4.2714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601006286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:33 Heat of formation + Delta-G solvation = -6.007458 kcal Electronic energy + Delta-G solvation = -25488.645844 eV Core-core repulsion = 21956.495762 eV Total energy + Delta-G solvation = -3532.150082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.91239 -40.14450 -38.59927 -37.37746 -35.73978 -35.12915 -32.29105 -31.67153 -30.85327 -30.13298 -27.46100 -26.22260 -23.80115 -23.36099 -23.20266 -22.65387 -21.45141 -21.11217 -20.78095 -19.36202 -18.05854 -17.63293 -17.14920 -16.97944 -16.48188 -16.00226 -15.92797 -15.60387 -15.46544 -15.01161 -14.81081 -14.48573 -14.28232 -14.05942 -13.80593 -13.54682 -13.41873 -13.16618 -12.87704 -12.86554 -12.75380 -12.45450 -12.37572 -12.31644 -12.16870 -11.94203 -11.88635 -11.52876 -11.44570 -11.32071 -11.14306 -10.96679 -10.23811 -9.95300 -9.53891 -9.38330 -9.19402 -8.66763 -6.36459 0.52340 1.01936 1.32430 1.45847 1.48404 2.20803 2.35572 2.43128 2.80716 2.82055 2.90612 3.62705 3.70424 3.73609 3.79722 4.00877 4.10499 4.23074 4.32836 4.35685 4.38843 4.40001 4.49163 4.58287 4.60541 4.66868 4.73819 4.79617 4.84324 4.90758 4.93876 5.04923 5.08305 5.10916 5.18352 5.23651 5.26355 5.30993 5.34830 5.62660 5.67787 5.76460 5.82823 6.06460 6.09181 6.12068 6.35853 6.66242 6.81843 6.93174 7.02677 7.68117 8.31758 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016972 B = 0.002945 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.333187 B = 9505.250368 C =10704.938821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.031 3.969 3 Si 0.978 3.022 4 H -0.271 1.271 5 H -0.257 1.257 6 H -0.264 1.264 7 C -0.463 4.463 8 H 0.084 0.916 9 C 0.114 3.886 10 C -0.175 4.175 11 C -0.093 4.093 12 C -0.233 4.233 13 C -0.054 4.054 14 C -0.277 4.277 15 C 0.558 3.442 16 O -0.581 6.581 17 N -0.725 5.725 18 C 0.137 3.863 19 C -0.091 4.091 20 H 0.099 0.901 21 C -0.122 4.122 22 C 0.038 3.962 23 N -0.487 5.487 24 C -0.027 4.027 25 C -0.153 4.153 26 C -0.165 4.165 27 C 0.047 3.953 28 H 0.288 0.712 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.407 0.593 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.041 0.959 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 -13.992 -11.687 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.183 4.183 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.181 1.181 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.102 0.898 9 C 0.111 3.889 10 C -0.194 4.194 11 C -0.112 4.112 12 C -0.252 4.252 13 C -0.073 4.073 14 C -0.282 4.282 15 C 0.351 3.649 16 O -0.463 6.463 17 N -0.379 5.379 18 C 0.012 3.988 19 C -0.110 4.110 20 H 0.117 0.883 21 C -0.160 4.160 22 C -0.090 4.090 23 N -0.211 5.211 24 C -0.137 4.137 25 C -0.191 4.191 26 C -0.203 4.203 27 C -0.081 4.081 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.138 0.862 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.244 0.756 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.115 0.885 45 H 0.060 0.940 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.055 -13.700 -11.701 19.736 hybrid contribution -0.161 1.769 -0.075 1.778 sum 7.894 -11.931 -11.776 18.530 Atomic orbital electron populations 1.69731 1.08567 1.30524 1.36517 1.26784 0.95610 1.04263 0.91680 0.85276 0.79173 0.76514 0.79114 1.19663 1.18100 1.18802 1.20181 0.96608 0.91076 1.41396 0.89788 1.17882 0.90893 0.92312 0.87830 1.21267 0.99786 0.97107 1.01257 1.21196 0.98294 0.93020 0.98656 1.20829 1.01560 0.98579 1.04211 1.21085 0.94222 0.95425 0.96552 1.19876 1.03876 0.97298 1.07105 1.18458 0.83968 0.82493 0.79966 1.90635 1.54290 1.32491 1.68900 1.45714 1.33204 1.15470 1.43497 1.21249 0.88623 0.97339 0.91553 1.22036 0.95678 0.95830 0.97459 0.88274 1.22420 0.96924 1.02837 0.93778 1.23090 0.89207 0.99473 0.97207 1.65238 1.01937 1.51240 1.02637 1.22686 0.96871 0.97926 0.96181 1.23053 1.01939 0.97071 0.97016 1.23053 0.90968 1.03678 1.02587 1.22979 0.97427 0.96654 0.91082 0.90130 0.88544 0.86179 0.84786 0.84811 0.75631 0.93894 0.92845 0.89239 0.91846 0.89063 0.94359 0.89816 0.88426 0.87478 0.87630 0.88516 0.94027 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.91 11.28 21.88 0.25 -44.67 16 2 C 0.03 1.67 5.26 85.37 0.45 2.12 16 3 Si 0.98 42.52 29.57 68.60 2.03 44.55 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.46 -27.10 7.73 23.42 0.18 -26.92 16 8 H 0.08 5.19 5.80 -2.91 -0.02 5.17 16 9 C 0.11 6.38 5.47 -21.11 -0.12 6.26 16 10 C -0.17 -9.08 8.61 22.72 0.20 -8.88 16 11 C -0.09 -4.03 10.01 22.26 0.22 -3.80 16 12 C -0.23 -8.96 10.03 22.41 0.22 -8.74 16 13 C -0.05 -2.14 9.52 22.50 0.21 -1.93 16 14 C -0.28 -13.51 5.92 -19.70 -0.12 -13.63 16 15 C 0.56 26.11 7.72 86.67 0.67 26.77 16 16 O -0.58 -32.00 13.55 -4.07 -0.06 -32.05 16 17 N -0.72 -24.50 5.27 -466.38 -2.46 -26.96 16 18 C 0.14 3.98 4.76 86.38 0.41 4.39 16 19 C -0.09 -1.88 3.13 -9.89 -0.03 -1.91 16 20 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 21 C -0.12 -2.36 6.33 31.49 0.20 -2.16 16 22 C 0.04 0.71 6.49 86.45 0.56 1.27 16 23 N -0.49 -9.20 5.52 -856.37 -4.73 -13.93 16 24 C -0.03 -0.47 4.97 44.91 0.22 -0.24 16 25 C -0.15 -2.09 10.46 30.60 0.32 -1.77 16 26 C -0.17 -2.32 10.25 30.59 0.31 -2.01 16 27 C 0.05 0.92 5.87 86.45 0.51 1.42 16 28 H 0.29 14.15 8.29 -92.71 -0.77 13.38 16 29 H 0.10 5.24 6.76 -2.91 -0.02 5.22 16 30 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 31 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 32 H 0.13 4.00 6.42 -2.91 -0.02 3.98 16 33 H 0.41 11.18 6.37 -92.70 -0.59 10.59 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.44 7.63 -2.39 -0.02 1.42 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 39 H 0.04 0.76 7.87 -2.39 -0.02 0.74 16 40 H 0.08 1.47 7.96 -2.39 -0.02 1.46 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 42 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.04 0.89 7.72 -2.39 -0.02 0.87 16 46 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -68.12 371.39 -0.14 -68.27 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.39 Total: 34.53 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 4.43 Total: -29.74 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -6.94 Total: -85.55 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.06 Total: -32.05 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -68.12 -0.14 -68.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601006286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.258 kcal (2) G-P(sol) polarization free energy of solvation -68.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds