Wall clock time and date at job start Fri Apr 10 2020 23:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.47159 * 2 1 4 4 C 1.38361 * 119.85217 * 89.99541 * 3 2 1 5 5 C 1.37957 * 120.13803 * 179.97438 * 4 3 2 6 6 C 1.39570 * 119.85811 * 0.02562 * 5 4 3 7 7 C 1.47843 * 120.14748 * 179.97438 * 6 5 4 8 8 O 1.21558 * 119.99877 * 335.22077 * 7 6 5 9 9 N 1.34777 * 120.00200 * 155.21520 * 7 6 5 10 10 C 1.46773 * 125.33639 * 354.49827 * 9 7 6 11 11 C 1.53967 * 106.62517 * 198.51280 * 10 9 7 12 12 H 1.09008 * 113.60876 * 94.61625 * 11 10 9 13 13 C 1.53921 * 109.25495 * 221.81197 * 11 10 9 14 14 N 1.46742 * 106.72242 * 81.63580 * 13 11 10 15 15 C 1.36942 * 125.33389 * 198.32578 * 14 13 11 16 16 H 1.07996 * 120.00284 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99539 * 0.02562 * 15 14 13 18 18 N 1.31615 * 120.00077 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99700 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47207 * 59.99772 * 19 17 15 21 21 H 1.48497 * 109.46963 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47176 * 299.99892 * 19 17 15 23 23 C 1.46638 * 109.33921 * 18.34180 * 14 13 11 24 24 C 1.53690 * 108.01142 * 359.16308 * 23 14 13 25 25 H 1.08998 * 112.55635 * 105.90663 * 24 23 14 26 26 C 1.46670 * 125.33624 * 174.49528 * 9 7 6 27 27 C 1.39580 * 119.70955 * 0.25002 * 6 5 4 28 28 C 1.37960 * 119.85374 * 359.47410 * 27 6 5 29 29 H 1.09001 * 109.46694 * 60.00309 * 1 2 3 30 30 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47104 * 300.00464 * 1 2 3 32 32 H 1.08993 * 109.47578 * 239.99700 * 2 1 3 33 33 H 1.09001 * 109.47212 * 119.99608 * 2 1 3 34 34 H 1.07994 * 119.92697 * 0.02562 * 4 3 2 35 35 H 1.08004 * 120.06994 * 180.02562 * 5 4 3 36 36 H 1.09001 * 110.02660 * 79.22528 * 10 9 7 37 37 H 1.08998 * 110.03093 * 317.80595 * 10 9 7 38 38 H 1.08997 * 110.01458 * 200.95240 * 13 11 10 39 39 H 1.09008 * 110.01109 * 322.31828 * 13 11 10 40 40 H 0.97004 * 119.99516 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.76449 * 239.52321 * 23 14 13 42 42 H 1.09003 * 109.76477 * 118.80717 * 23 14 13 43 43 H 1.08999 * 109.77078 * 59.83718 * 26 9 7 44 44 H 1.09000 * 109.77378 * 299.07835 * 26 9 7 45 45 H 1.07999 * 120.07266 * 179.72482 * 27 6 5 46 46 H 1.07995 * 119.92583 * 180.27527 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2619 2.0702 1.2000 5 6 2.7222 3.3707 1.2069 6 6 2.9560 4.0315 0.0000 7 6 3.4488 5.4254 -0.0001 8 8 3.2353 6.1455 0.9556 9 7 4.1348 5.8976 -1.0598 10 6 4.5567 5.1038 -2.2201 11 6 5.6743 5.9015 -2.9167 12 1 6.6776 5.6088 -2.6071 13 6 5.4714 5.8343 -4.4410 14 7 4.4644 6.8472 -4.7779 15 6 3.7393 6.8874 -5.9389 16 1 3.0180 7.6753 -6.0981 17 6 3.9314 5.9154 -6.9112 18 7 4.8100 4.9550 -6.7170 19 14 2.9427 5.9707 -8.4952 20 1 3.2152 7.2466 -9.2045 21 1 3.3327 4.8299 -9.3621 22 1 1.4948 5.8800 -8.1784 23 6 4.3565 7.8097 -3.6770 24 6 5.3314 7.3773 -2.5704 25 1 6.2145 8.0141 -2.5189 26 6 4.5767 7.2852 -1.2343 27 6 2.7169 3.3725 -1.2070 28 6 2.2620 2.0701 -1.2000 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.0810 1.5576 2.1332 35 1 2.9014 3.8764 2.1443 36 1 3.7176 4.9638 -2.9016 37 1 4.9372 4.1365 -1.8922 38 1 6.4083 6.0555 -4.9521 39 1 5.1150 4.8446 -4.7266 40 1 4.9445 4.2760 -7.3966 41 1 3.3377 7.8138 -3.2895 42 1 4.6199 8.8062 -4.0315 43 1 5.2397 7.5666 -0.4162 44 1 3.7117 7.9481 -1.2529 45 1 2.8915 3.8797 -2.1444 46 1 2.0809 1.5576 -2.1333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049197458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:05 Heat of formation + Delta-G solvation = 21.730323 kcal Electronic energy + Delta-G solvation = -26453.348124 eV Core-core repulsion = 22922.400842 eV Total energy + Delta-G solvation = -3530.947282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.56062 -39.17323 -37.91921 -35.02902 -34.24254 -32.38762 -31.08887 -30.30326 -30.00176 -29.14381 -25.81368 -25.58109 -24.51050 -22.97250 -22.67339 -21.17768 -20.10890 -19.69417 -19.36164 -17.33801 -16.80392 -16.12897 -15.95121 -15.66449 -14.91579 -14.76136 -14.49660 -14.19199 -13.95217 -13.74738 -13.59715 -13.34826 -13.17228 -12.84067 -12.72281 -12.50780 -12.16492 -11.94357 -11.81465 -11.60650 -11.50997 -11.35921 -11.10897 -10.98694 -10.85377 -10.81487 -10.39270 -10.20150 -10.05993 -9.90110 -9.71502 -9.64683 -8.97836 -8.77586 -8.67836 -8.33784 -6.89773 -5.74956 -3.13392 0.89753 1.37158 2.92179 3.19668 3.36731 3.41716 3.42317 3.83307 4.43311 4.50649 4.65124 4.68751 4.89445 4.94629 4.99765 5.06514 5.14607 5.22934 5.34371 5.35421 5.43021 5.44413 5.51707 5.62300 5.67795 5.73120 5.79384 5.84811 5.85524 5.91569 5.99194 6.00279 6.13879 6.20667 6.30756 6.34424 6.35976 6.51113 6.54962 6.62596 6.66882 6.80823 6.88602 7.38500 7.56156 7.71701 7.74840 8.25050 8.31480 9.16465 9.76540 10.39713 11.31598 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.004191 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.506101 B = 6679.285716 C = 8457.499615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.063 4.063 4 C -0.131 4.131 5 C -0.062 4.062 6 C -0.133 4.133 7 C 0.571 3.429 8 O -0.549 6.549 9 N -0.604 5.604 10 C 0.109 3.891 11 C -0.124 4.124 12 H 0.088 0.912 13 C 0.170 3.830 14 N -0.601 5.601 15 C -0.226 4.226 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.142 3.858 24 C -0.109 4.109 25 H 0.096 0.904 26 C 0.121 3.879 27 C -0.089 4.089 28 C -0.124 4.124 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.021 0.979 39 H 0.098 0.902 40 H 0.253 0.747 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.146 0.854 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 -7.796 13.276 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.063 4.063 4 C -0.149 4.149 5 C -0.081 4.081 6 C -0.135 4.135 7 C 0.361 3.639 8 O -0.429 6.429 9 N -0.336 5.336 10 C -0.013 4.013 11 C -0.145 4.145 12 H 0.107 0.893 13 C 0.045 3.955 14 N -0.327 5.327 15 C -0.354 4.354 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.571 5.571 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.212 1.212 23 C 0.016 3.984 24 C -0.129 4.129 25 H 0.114 0.886 26 C -0.002 4.002 27 C -0.108 4.108 28 C -0.142 4.142 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.115 0.885 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.164 0.836 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.552 -7.548 13.627 15.785 hybrid contribution -0.414 0.131 -0.950 1.044 sum -2.965 -7.417 12.677 14.984 Atomic orbital electron populations 1.21749 0.94545 1.01734 1.02442 1.20601 0.96324 0.92534 1.03046 1.20122 0.96783 0.96148 0.93229 1.20935 1.01583 0.94754 0.97654 1.21169 0.95626 0.93967 0.97330 1.19861 1.05062 0.94103 0.94522 1.17985 0.77753 0.86930 0.81252 1.90739 1.58711 1.59417 1.34025 1.48203 1.54438 1.11064 1.19876 1.22461 0.97971 0.94495 0.86410 1.23295 0.97229 0.93448 1.00487 0.89333 1.21413 0.92123 0.96569 0.85380 1.44218 1.45014 1.27288 1.16194 1.19022 1.15134 1.08999 0.92236 0.90498 1.24757 0.99274 0.97617 0.98646 1.69837 1.36926 1.15935 1.34437 0.86178 0.79464 0.77051 0.82965 1.21197 1.21539 1.21159 1.21229 0.95536 0.93464 0.88207 1.22777 0.98609 0.97846 0.93627 0.88586 1.21792 0.98573 0.82637 0.97201 1.22073 0.95537 0.94648 0.98494 1.21050 1.00515 0.94814 0.97822 0.92320 0.92355 0.92535 0.90707 0.90959 0.85711 0.85165 0.89684 0.91172 0.96140 0.88462 0.93618 0.95713 0.95853 0.91860 0.91317 0.83622 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.90 37.16 0.37 -0.78 16 2 C -0.09 -0.73 6.06 -27.88 -0.17 -0.90 16 3 C -0.06 -0.68 5.14 -104.53 -0.54 -1.22 16 4 C -0.13 -1.45 9.68 -39.64 -0.38 -1.84 16 5 C -0.06 -0.82 9.59 -39.19 -0.38 -1.20 16 6 C -0.13 -2.01 5.67 -104.97 -0.59 -2.60 16 7 C 0.57 9.95 7.63 -12.33 -0.09 9.86 16 8 O -0.55 -10.92 16.92 5.31 0.09 -10.83 16 9 N -0.60 -10.09 3.31 -173.40 -0.57 -10.67 16 10 C 0.11 1.79 4.33 -3.39 -0.01 1.77 16 11 C -0.12 -2.14 4.17 -88.35 -0.37 -2.51 16 12 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 13 C 0.17 3.79 4.81 -3.43 -0.02 3.77 16 14 N -0.60 -14.46 3.37 -171.94 -0.58 -15.04 16 15 C -0.23 -6.02 10.25 -15.06 -0.15 -6.18 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 18 N -0.92 -25.42 10.16 55.49 0.56 -24.85 16 19 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.14 2.83 6.60 -3.61 -0.02 2.81 16 24 C -0.11 -1.80 4.02 -88.60 -0.36 -2.16 16 25 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 26 C 0.12 1.92 6.24 -3.57 -0.02 1.90 16 27 C -0.09 -1.27 8.18 -39.18 -0.32 -1.59 16 28 C -0.12 -1.52 9.68 -39.64 -0.38 -1.90 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 1.66 7.85 -52.48 -0.41 1.25 16 36 H 0.09 1.58 5.95 -51.93 -0.31 1.27 16 37 H 0.07 1.05 7.17 -51.93 -0.37 0.68 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 2.40 6.00 -51.92 -0.31 2.08 16 40 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.03 0.51 7.29 -51.93 -0.38 0.13 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 1.12 7.44 -51.93 -0.39 0.74 16 45 H 0.15 2.19 4.45 -52.49 -0.23 1.96 16 46 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -30.22 361.75 -10.63 -40.85 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.02 Total: 1.82 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.54 Total: -3.05 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.59 Total: -50.56 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.22 -10.63 -40.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049197458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.583 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds