Wall clock time and date at job start Fri Apr 10 2020 23:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.47159 * 2 1 4 4 C 1.38361 * 119.85217 * 89.99541 * 3 2 1 5 5 C 1.37957 * 120.13803 * 179.97438 * 4 3 2 6 6 C 1.39570 * 119.85811 * 0.02562 * 5 4 3 7 7 C 1.47843 * 120.14748 * 179.97438 * 6 5 4 8 8 O 1.21558 * 119.99877 * 335.22077 * 7 6 5 9 9 N 1.34777 * 120.00200 * 155.21520 * 7 6 5 10 10 C 1.46773 * 125.33639 * 354.49827 * 9 7 6 11 11 C 1.53967 * 106.62517 * 198.51280 * 10 9 7 12 12 H 1.09008 * 113.60876 * 94.61625 * 11 10 9 13 13 C 1.53921 * 109.25495 * 221.81197 * 11 10 9 14 14 N 1.46742 * 106.72242 * 81.63580 * 13 11 10 15 15 C 1.36942 * 125.33389 * 198.32578 * 14 13 11 16 16 H 1.07996 * 120.00284 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99539 * 0.02562 * 15 14 13 18 18 N 1.31615 * 120.00077 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99700 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47207 * 59.99772 * 19 17 15 21 21 H 1.48497 * 109.46963 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47176 * 299.99892 * 19 17 15 23 23 C 1.46638 * 109.33921 * 18.34180 * 14 13 11 24 24 C 1.53690 * 108.01142 * 359.16308 * 23 14 13 25 25 H 1.08998 * 112.55635 * 105.90663 * 24 23 14 26 26 C 1.46670 * 125.33624 * 174.49528 * 9 7 6 27 27 C 1.39580 * 119.70955 * 0.25002 * 6 5 4 28 28 C 1.37960 * 119.85374 * 359.47410 * 27 6 5 29 29 H 1.09001 * 109.46694 * 60.00309 * 1 2 3 30 30 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47104 * 300.00464 * 1 2 3 32 32 H 1.08993 * 109.47578 * 239.99700 * 2 1 3 33 33 H 1.09001 * 109.47212 * 119.99608 * 2 1 3 34 34 H 1.07994 * 119.92697 * 0.02562 * 4 3 2 35 35 H 1.08004 * 120.06994 * 180.02562 * 5 4 3 36 36 H 1.09001 * 110.02660 * 79.22528 * 10 9 7 37 37 H 1.08998 * 110.03093 * 317.80595 * 10 9 7 38 38 H 1.08997 * 110.01458 * 200.95240 * 13 11 10 39 39 H 1.09008 * 110.01109 * 322.31828 * 13 11 10 40 40 H 0.97004 * 119.99516 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.76449 * 239.52321 * 23 14 13 42 42 H 1.09003 * 109.76477 * 118.80717 * 23 14 13 43 43 H 1.08999 * 109.77078 * 59.83718 * 26 9 7 44 44 H 1.09000 * 109.77378 * 299.07835 * 26 9 7 45 45 H 1.07999 * 120.07266 * 179.72482 * 27 6 5 46 46 H 1.07995 * 119.92583 * 180.27527 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2619 2.0702 1.2000 5 6 2.7222 3.3707 1.2069 6 6 2.9560 4.0315 0.0000 7 6 3.4488 5.4254 -0.0001 8 8 3.2353 6.1455 0.9556 9 7 4.1348 5.8976 -1.0598 10 6 4.5567 5.1038 -2.2201 11 6 5.6743 5.9015 -2.9167 12 1 6.6776 5.6088 -2.6071 13 6 5.4714 5.8343 -4.4410 14 7 4.4644 6.8472 -4.7779 15 6 3.7393 6.8874 -5.9389 16 1 3.0180 7.6753 -6.0981 17 6 3.9314 5.9154 -6.9112 18 7 4.8100 4.9550 -6.7170 19 14 2.9427 5.9707 -8.4952 20 1 3.2152 7.2466 -9.2045 21 1 3.3327 4.8299 -9.3621 22 1 1.4948 5.8800 -8.1784 23 6 4.3565 7.8097 -3.6770 24 6 5.3314 7.3773 -2.5704 25 1 6.2145 8.0141 -2.5189 26 6 4.5767 7.2852 -1.2343 27 6 2.7169 3.3725 -1.2070 28 6 2.2620 2.0701 -1.2000 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.0810 1.5576 2.1332 35 1 2.9014 3.8764 2.1443 36 1 3.7176 4.9638 -2.9016 37 1 4.9372 4.1365 -1.8922 38 1 6.4083 6.0555 -4.9521 39 1 5.1150 4.8446 -4.7266 40 1 4.9445 4.2760 -7.3966 41 1 3.3377 7.8138 -3.2895 42 1 4.6199 8.8062 -4.0315 43 1 5.2397 7.5666 -0.4162 44 1 3.7117 7.9481 -1.2529 45 1 2.8915 3.8797 -2.1444 46 1 2.0809 1.5576 -2.1333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049197458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:05 Heat of formation + Delta-G solvation = 6.192152 kcal Electronic energy + Delta-G solvation = -26454.021910 eV Core-core repulsion = 22922.400842 eV Total energy + Delta-G solvation = -3531.621068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87056 -40.35876 -39.25445 -36.66520 -35.13250 -34.10771 -32.22664 -31.63034 -31.53404 -30.29872 -27.46027 -27.11379 -25.73390 -24.24066 -23.68523 -22.23891 -21.71151 -20.97692 -20.78368 -18.94864 -18.30683 -17.49301 -17.18958 -16.73997 -16.56483 -16.08648 -15.83484 -15.53072 -15.24326 -14.84929 -14.60619 -14.55375 -14.33782 -14.13935 -14.09724 -13.65174 -13.53609 -13.41827 -13.23572 -13.05442 -12.77002 -12.71063 -12.64964 -12.18628 -12.05579 -11.94741 -11.88644 -11.77529 -11.66253 -11.54118 -11.35249 -11.07498 -10.67870 -9.97561 -9.85486 -9.60432 -8.85904 -7.79048 -5.19236 -0.15404 0.38959 1.48591 1.49898 1.56406 1.69432 1.90892 2.50557 2.78385 3.23995 3.33439 3.52147 3.62433 3.78410 3.81536 3.85933 3.94394 3.98711 4.20991 4.24485 4.28451 4.41094 4.44922 4.53106 4.54624 4.57180 4.63996 4.72517 4.80664 4.88695 4.93783 4.99274 5.01556 5.10201 5.11649 5.13494 5.19593 5.28937 5.34324 5.41206 5.42251 5.48871 5.60288 5.62156 5.82645 5.93261 6.29799 6.37759 6.97744 7.14576 7.80860 8.42127 9.25006 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.004191 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.506101 B = 6679.285716 C = 8457.499615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.054 4.054 4 C -0.124 4.124 5 C -0.068 4.068 6 C -0.155 4.155 7 C 0.568 3.432 8 O -0.580 6.580 9 N -0.605 5.605 10 C 0.121 3.879 11 C -0.113 4.113 12 H 0.117 0.883 13 C 0.179 3.821 14 N -0.620 5.620 15 C -0.244 4.244 16 H 0.075 0.925 17 C -0.055 4.055 18 N -0.943 5.943 19 Si 0.973 3.027 20 H -0.282 1.282 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.138 3.862 24 C -0.094 4.094 25 H 0.124 0.876 26 C 0.122 3.878 27 C -0.100 4.100 28 C -0.131 4.131 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.060 0.940 37 H 0.086 0.914 38 H -0.006 1.006 39 H 0.069 0.931 40 H 0.249 0.751 41 H 0.016 0.984 42 H 0.027 0.973 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.130 0.870 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 -9.095 14.651 17.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.054 4.054 4 C -0.142 4.142 5 C -0.087 4.087 6 C -0.158 4.158 7 C 0.359 3.641 8 O -0.462 6.462 9 N -0.336 5.336 10 C -0.001 4.001 11 C -0.133 4.133 12 H 0.135 0.865 13 C 0.054 3.946 14 N -0.346 5.346 15 C -0.373 4.373 16 H 0.093 0.907 17 C -0.248 4.248 18 N -0.592 5.592 19 Si 0.801 3.199 20 H -0.208 1.208 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.013 3.987 24 C -0.113 4.113 25 H 0.142 0.858 26 C -0.001 4.001 27 C -0.118 4.118 28 C -0.149 4.149 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.174 0.826 35 H 0.150 0.850 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.012 0.988 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.034 0.966 42 H 0.045 0.955 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.148 0.852 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.721 -8.831 15.008 17.625 hybrid contribution -0.420 0.506 -1.374 1.524 sum -3.140 -8.325 13.634 16.280 Atomic orbital electron populations 1.21750 0.94087 1.02688 1.01897 1.20682 0.96546 0.90681 1.04423 1.20479 0.95036 0.97386 0.92517 1.21275 1.00016 0.93809 0.99079 1.21315 0.95773 0.94927 0.96651 1.19801 1.07100 0.93280 0.95640 1.18389 0.77194 0.87725 0.80751 1.90707 1.59985 1.60422 1.35079 1.48245 1.54335 1.11354 1.19669 1.22250 0.96791 0.95124 0.85901 1.23194 0.98940 0.94374 0.96776 0.86452 1.21148 0.90210 0.94721 0.88570 1.44463 1.44979 1.28675 1.16458 1.19324 1.15464 1.08996 0.93507 0.90721 1.25474 1.00427 0.97508 1.01399 1.70051 1.37969 1.16263 1.34888 0.85244 0.78266 0.76832 0.79517 1.20792 1.21691 1.20659 1.21364 0.96192 0.92903 0.88247 1.22747 0.98634 0.97513 0.92436 0.85756 1.21815 0.98628 0.82310 0.97315 1.21950 0.96725 0.95552 0.97560 1.21246 1.00311 0.94142 0.99163 0.93453 0.90702 0.92536 0.90015 0.88985 0.82559 0.85003 0.92205 0.89541 0.98789 0.91265 0.94170 0.96569 0.95529 0.90006 0.91922 0.85238 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.90 71.98 0.71 -1.18 16 2 C -0.09 -1.15 6.06 29.85 0.18 -0.97 16 3 C -0.05 -1.05 5.14 -19.80 -0.10 -1.15 16 4 C -0.12 -2.43 9.68 22.23 0.22 -2.22 16 5 C -0.07 -1.72 9.59 22.52 0.22 -1.50 16 6 C -0.16 -4.68 5.67 -20.09 -0.11 -4.79 16 7 C 0.57 19.82 7.63 86.79 0.66 20.49 16 8 O -0.58 -23.10 16.92 -3.90 -0.07 -23.16 16 9 N -0.60 -20.04 3.31 -820.80 -2.72 -22.76 16 10 C 0.12 4.00 4.33 86.65 0.38 4.38 16 11 C -0.11 -3.81 4.17 -9.33 -0.04 -3.85 16 12 H 0.12 3.34 8.14 -2.38 -0.02 3.32 16 13 C 0.18 8.13 4.81 86.64 0.42 8.54 16 14 N -0.62 -30.48 3.37 -697.89 -2.35 -32.83 16 15 C -0.24 -13.31 10.25 84.03 0.86 -12.45 16 16 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 17 C -0.05 -2.98 5.48 84.86 0.47 -2.52 16 18 N -0.94 -53.26 10.16 21.65 0.22 -53.04 16 19 Si 0.97 44.43 29.55 68.60 2.03 46.45 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 C 0.14 5.54 6.60 86.59 0.57 6.12 16 24 C -0.09 -2.98 4.02 -9.49 -0.04 -3.02 16 25 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 26 C 0.12 3.75 6.24 86.59 0.54 4.29 16 27 C -0.10 -2.84 8.18 22.53 0.18 -2.66 16 28 C -0.13 -3.08 9.68 22.23 0.22 -2.86 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 33 H 0.09 0.92 8.08 -2.39 -0.02 0.90 16 34 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.13 3.25 7.85 -2.91 -0.02 3.22 16 36 H 0.06 2.31 5.95 -2.39 -0.01 2.30 16 37 H 0.09 2.56 7.17 -2.39 -0.02 2.54 16 38 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 39 H 0.07 3.54 6.00 -2.38 -0.01 3.53 16 40 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 41 H 0.02 0.68 7.29 -2.39 -0.02 0.66 16 42 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.06 2.02 7.44 -2.39 -0.02 2.00 16 45 H 0.13 4.08 4.45 -2.91 -0.01 4.07 16 46 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -66.60 361.75 3.40 -63.19 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.97 Total: 17.50 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 5.32 Total: 4.65 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -4.85 Total: -108.63 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.07 Total: -23.16 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -66.60 3.40 -63.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049197458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.386 kcal (2) G-P(sol) polarization free energy of solvation -66.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds