Wall clock time and date at job start Fri Apr 10 2020 23:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38390 * 119.85495 * 2 1 4 4 C 1.37929 * 120.14774 * 180.25528 * 3 2 1 5 5 C 1.39597 * 119.85258 * 359.44553 * 4 3 2 6 6 C 1.47845 * 120.14400 * 180.25255 * 5 4 3 7 7 O 1.21558 * 119.99652 * 127.19815 * 6 5 4 8 8 N 1.34773 * 120.00140 * 307.19312 * 6 5 4 9 9 C 1.46674 * 125.33863 * 184.81360 * 8 6 5 10 10 C 1.53720 * 107.94163 * 180.54784 * 9 8 6 11 11 H 1.08998 * 112.56246 * 139.72349 * 10 9 8 12 12 C 1.53698 * 109.33735 * 266.24683 * 10 9 8 13 13 N 1.46637 * 108.00597 * 127.55834 * 12 10 9 14 14 C 1.36936 * 125.32814 * 180.81639 * 13 12 10 15 15 H 1.07998 * 120.00215 * 180.02562 * 14 13 12 16 16 C 1.38817 * 120.00205 * 0.02562 * 14 13 12 17 17 N 1.31619 * 119.99684 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00176 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47245 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46914 * 120.00357 * 18 16 14 21 21 H 1.48504 * 109.46830 * 240.00264 * 18 16 14 22 22 C 1.46743 * 109.34631 * 0.83780 * 13 12 10 23 23 C 1.53940 * 106.71863 * 341.65884 * 22 13 12 24 24 H 1.08993 * 113.01267 * 150.83067 * 23 22 13 25 25 C 1.46771 * 125.33968 * 4.50259 * 8 6 5 26 26 C 1.39562 * 119.71206 * 0.27535 * 5 4 3 27 27 C 1.50697 * 120.07372 * 180.02562 * 26 5 4 28 28 C 1.37984 * 119.85180 * 0.02562 * 26 5 4 29 29 H 1.09004 * 109.47449 * 270.30177 * 1 2 3 30 30 H 1.09002 * 109.47315 * 30.30281 * 1 2 3 31 31 H 1.09004 * 109.47186 * 150.29990 * 1 2 3 32 32 H 1.07999 * 119.92267 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.07813 * 179.71758 * 4 3 2 34 34 H 1.09004 * 109.76629 * 300.16649 * 9 8 6 35 35 H 1.08996 * 109.77183 * 60.91684 * 9 8 6 36 36 H 1.08995 * 109.76375 * 247.19911 * 12 10 9 37 37 H 1.09001 * 109.75911 * 7.92218 * 12 10 9 38 38 H 0.96996 * 119.99941 * 179.97438 * 17 16 14 39 39 H 1.08994 * 110.00996 * 222.34579 * 22 13 12 40 40 H 1.09001 * 110.00942 * 100.96944 * 22 13 12 41 41 H 1.08996 * 110.03279 * 280.77976 * 25 8 6 42 42 H 1.09007 * 110.02377 * 42.19464 * 25 8 6 43 43 H 1.09000 * 109.46737 * 94.22371 * 27 26 5 44 44 H 1.08999 * 109.46826 * 214.21864 * 27 26 5 45 45 H 1.09000 * 109.47168 * 334.22467 * 27 26 5 46 46 H 1.07992 * 119.92589 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5751 1.2073 -0.0053 5 6 4.2762 0.0002 0.0010 6 6 5.7546 0.0002 0.0010 7 8 6.3624 -0.6318 0.8429 8 7 6.4285 0.7009 -0.9324 9 6 7.8852 0.7039 -1.1035 10 6 8.2230 1.6456 -2.2706 11 1 9.1098 2.2493 -2.0776 12 6 8.3209 0.8307 -3.5701 13 7 7.4503 1.4615 -4.5673 14 6 7.2584 1.0141 -5.8472 15 1 6.5953 1.5476 -6.5121 16 6 7.9161 -0.1253 -6.2902 17 7 8.7238 -0.7758 -5.4797 18 14 7.6548 -0.7352 -8.0363 19 1 6.7061 0.1658 -8.7387 20 1 8.9535 -0.7458 -8.7564 21 1 7.0967 -2.1109 -8.0017 22 6 6.8173 2.6476 -3.9792 23 6 6.9398 2.5034 -2.4515 24 1 6.9869 3.4623 -1.9354 25 6 5.8193 1.5757 -1.9413 26 6 3.5754 -1.2067 0.0069 27 6 4.3240 -2.5146 0.0143 28 6 2.1956 -1.1998 0.0058 29 1 -0.3634 0.0054 1.0277 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3634 -0.8927 -0.5092 32 1 1.6522 2.1334 -0.0004 33 1 4.1116 2.1446 -0.0099 34 1 8.3628 1.0613 -0.1912 35 1 8.2318 -0.3042 -1.3307 36 1 9.3504 0.8296 -3.9278 37 1 7.9924 -0.1927 -3.3889 38 1 9.1831 -1.5722 -5.7891 39 1 5.7668 2.6909 -4.2666 40 1 7.3327 3.5488 -4.3113 41 1 5.4222 0.9788 -2.7623 42 1 5.0227 2.1675 -1.4902 43 1 4.4380 -2.8621 1.0411 44 1 3.7673 -3.2551 -0.5601 45 1 5.3080 -2.3726 -0.4326 46 1 1.6521 -2.1330 0.0099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049198110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:08 Heat of formation + Delta-G solvation = 16.999257 kcal Electronic energy + Delta-G solvation = -26778.992140 eV Core-core repulsion = 23247.839704 eV Total energy + Delta-G solvation = -3531.152436 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56396 -39.24415 -37.83892 -34.94982 -33.50848 -32.55855 -31.99738 -30.28004 -29.43892 -27.64260 -27.14391 -25.50225 -25.37597 -23.30694 -22.30849 -21.12864 -20.10777 -19.37403 -19.26248 -17.29708 -16.72615 -16.34796 -15.71295 -15.46605 -15.14779 -14.54112 -14.19937 -14.11479 -13.96789 -13.68090 -13.34530 -13.25559 -13.07438 -12.88952 -12.68694 -12.40508 -12.20632 -12.03598 -11.95405 -11.63226 -11.50918 -11.46805 -11.42011 -11.02444 -10.89019 -10.83237 -10.41616 -10.10707 -10.07009 -9.85720 -9.66953 -9.63399 -8.87145 -8.65620 -8.61506 -8.26626 -6.85489 -5.74322 -3.08119 0.98403 1.29692 2.83675 3.22808 3.38183 3.43706 3.46247 3.70197 4.47453 4.53731 4.65584 4.71105 4.77188 4.86326 5.06284 5.16279 5.21471 5.26825 5.38139 5.44420 5.49270 5.51120 5.60938 5.64403 5.66207 5.71107 5.73543 5.82384 5.89800 5.91607 5.99098 6.17460 6.19926 6.23205 6.29128 6.37913 6.42716 6.48227 6.55317 6.57013 6.64710 6.80532 6.85064 7.54721 7.56014 7.77037 7.80156 8.24338 8.34549 9.19877 9.80459 10.43888 11.37171 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.004043 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.909796 B = 6923.209971 C = 7448.755383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.068 4.068 3 C -0.132 4.132 4 C -0.082 4.082 5 C -0.124 4.124 6 C 0.574 3.426 7 O -0.541 6.541 8 N -0.600 5.600 9 C 0.121 3.879 10 C -0.123 4.123 11 H 0.091 0.909 12 C 0.185 3.815 13 N -0.602 5.602 14 C -0.230 4.230 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.920 5.920 18 Si 0.911 3.089 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.146 3.854 23 C -0.112 4.112 24 H 0.090 0.910 25 C 0.108 3.892 26 C -0.031 4.031 27 C -0.117 4.117 28 C -0.127 4.127 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.252 0.748 39 H 0.038 0.962 40 H 0.020 0.980 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.664 4.118 11.923 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.068 4.068 3 C -0.150 4.150 4 C -0.101 4.101 5 C -0.127 4.127 6 C 0.362 3.638 7 O -0.419 6.419 8 N -0.332 5.332 9 C -0.002 4.002 10 C -0.143 4.143 11 H 0.109 0.891 12 C 0.060 3.940 13 N -0.329 5.329 14 C -0.358 4.358 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.567 5.567 18 Si 0.742 3.258 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.218 1.218 22 C 0.019 3.981 23 C -0.132 4.132 24 H 0.108 0.892 25 C -0.014 4.014 26 C -0.032 4.032 27 C -0.174 4.174 28 C -0.145 4.145 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.038 0.962 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.291 3.555 12.271 17.728 hybrid contribution -0.024 -0.281 -1.015 1.053 sum -12.315 3.275 11.256 17.003 Atomic orbital electron populations 1.20824 0.91031 1.03002 1.02353 1.20037 0.96145 0.93074 0.97591 1.20908 0.93706 0.97695 1.02666 1.21253 0.94307 0.96919 0.97602 1.19751 0.92754 0.94133 1.06082 1.17894 0.86747 0.78637 0.80509 1.90765 1.69803 1.43741 1.37601 1.48194 1.08031 1.45467 1.31557 1.21848 0.79673 1.00838 0.97806 1.23160 0.97308 0.96627 0.97173 0.89076 1.21114 0.95437 0.94047 0.83397 1.44215 1.51117 1.27086 1.10465 1.19077 1.22785 1.07177 0.86784 0.90329 1.24796 0.99289 0.97906 0.98264 1.69966 1.32511 1.20057 1.34216 0.86059 0.77341 0.78482 0.83961 1.20495 1.21724 1.21780 1.21163 0.96607 0.91266 0.89075 1.22955 0.94532 0.97492 0.98172 0.89199 1.22287 0.95933 0.92054 0.91162 1.19887 0.93470 0.94430 0.95369 1.20857 1.00409 0.93294 1.02834 1.20837 0.92997 0.97841 1.02832 0.91048 0.91340 0.91386 0.85618 0.85328 0.92183 0.90835 0.93724 0.93083 0.93758 0.94432 0.96210 0.90259 0.91299 0.90428 0.91395 0.90994 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.00 36.00 0.36 -0.50 16 2 C -0.07 -0.73 5.89 -104.53 -0.62 -1.34 16 3 C -0.13 -1.43 9.68 -39.64 -0.38 -1.81 16 4 C -0.08 -1.04 8.22 -39.19 -0.32 -1.37 16 5 C -0.12 -1.90 5.29 -104.97 -0.56 -2.45 16 6 C 0.57 10.17 6.29 -12.33 -0.08 10.09 16 7 O -0.54 -10.95 16.19 5.31 0.09 -10.87 16 8 N -0.60 -10.37 3.31 -173.28 -0.57 -10.95 16 9 C 0.12 2.12 6.24 -3.57 -0.02 2.10 16 10 C -0.12 -2.19 4.02 -88.60 -0.36 -2.55 16 11 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 12 C 0.18 4.33 4.75 -3.60 -0.02 4.31 16 13 N -0.60 -14.76 3.37 -171.93 -0.58 -15.34 16 14 C -0.23 -6.25 10.25 -15.06 -0.15 -6.40 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 17 N -0.92 -26.67 10.25 55.49 0.57 -26.11 16 18 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 22 C 0.15 2.81 6.37 -3.42 -0.02 2.79 16 23 C -0.11 -1.80 4.19 -88.24 -0.37 -2.17 16 24 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 25 C 0.11 1.74 5.66 -3.29 -0.02 1.72 16 26 C -0.03 -0.44 5.91 -104.22 -0.62 -1.05 16 27 C -0.12 -1.62 9.22 36.00 0.33 -1.29 16 28 C -0.13 -1.49 9.35 -39.64 -0.37 -1.87 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.45 6.50 -52.49 -0.34 1.11 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.42 7.44 -51.93 -0.39 1.04 16 36 H 0.04 1.17 7.46 -51.93 -0.39 0.78 16 37 H 0.05 1.36 6.51 -51.93 -0.34 1.02 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.04 0.70 7.94 -51.93 -0.41 0.29 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 1.50 7.72 -51.93 -0.40 1.10 16 42 H 0.07 0.91 5.09 -51.93 -0.26 0.65 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 45 H 0.07 1.18 6.57 -51.93 -0.34 0.84 16 46 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -31.91 361.40 -10.44 -42.35 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.06 Total: 0.65 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -3.30 Total: -2.06 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.58 Total: -52.39 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.91 -10.44 -42.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049198110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.353 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds