Wall clock time and date at job start Fri Apr 10 2020 23:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38390 * 119.85495 * 2 1 4 4 C 1.37929 * 120.14774 * 180.25528 * 3 2 1 5 5 C 1.39597 * 119.85258 * 359.44553 * 4 3 2 6 6 C 1.47845 * 120.14400 * 180.25255 * 5 4 3 7 7 O 1.21558 * 119.99652 * 127.19815 * 6 5 4 8 8 N 1.34773 * 120.00140 * 307.19312 * 6 5 4 9 9 C 1.46674 * 125.33863 * 184.81360 * 8 6 5 10 10 C 1.53720 * 107.94163 * 180.54784 * 9 8 6 11 11 H 1.08998 * 112.56246 * 139.72349 * 10 9 8 12 12 C 1.53698 * 109.33735 * 266.24683 * 10 9 8 13 13 N 1.46637 * 108.00597 * 127.55834 * 12 10 9 14 14 C 1.36936 * 125.32814 * 180.81639 * 13 12 10 15 15 H 1.07998 * 120.00215 * 180.02562 * 14 13 12 16 16 C 1.38817 * 120.00205 * 0.02562 * 14 13 12 17 17 N 1.31619 * 119.99684 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00176 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47245 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46914 * 120.00357 * 18 16 14 21 21 H 1.48504 * 109.46830 * 240.00264 * 18 16 14 22 22 C 1.46743 * 109.34631 * 0.83780 * 13 12 10 23 23 C 1.53940 * 106.71863 * 341.65884 * 22 13 12 24 24 H 1.08993 * 113.01267 * 150.83067 * 23 22 13 25 25 C 1.46771 * 125.33968 * 4.50259 * 8 6 5 26 26 C 1.39562 * 119.71206 * 0.27535 * 5 4 3 27 27 C 1.50697 * 120.07372 * 180.02562 * 26 5 4 28 28 C 1.37984 * 119.85180 * 0.02562 * 26 5 4 29 29 H 1.09004 * 109.47449 * 270.30177 * 1 2 3 30 30 H 1.09002 * 109.47315 * 30.30281 * 1 2 3 31 31 H 1.09004 * 109.47186 * 150.29990 * 1 2 3 32 32 H 1.07999 * 119.92267 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.07813 * 179.71758 * 4 3 2 34 34 H 1.09004 * 109.76629 * 300.16649 * 9 8 6 35 35 H 1.08996 * 109.77183 * 60.91684 * 9 8 6 36 36 H 1.08995 * 109.76375 * 247.19911 * 12 10 9 37 37 H 1.09001 * 109.75911 * 7.92218 * 12 10 9 38 38 H 0.96996 * 119.99941 * 179.97438 * 17 16 14 39 39 H 1.08994 * 110.00996 * 222.34579 * 22 13 12 40 40 H 1.09001 * 110.00942 * 100.96944 * 22 13 12 41 41 H 1.08996 * 110.03279 * 280.77976 * 25 8 6 42 42 H 1.09007 * 110.02377 * 42.19464 * 25 8 6 43 43 H 1.09000 * 109.46737 * 94.22371 * 27 26 5 44 44 H 1.08999 * 109.46826 * 214.21864 * 27 26 5 45 45 H 1.09000 * 109.47168 * 334.22467 * 27 26 5 46 46 H 1.07992 * 119.92589 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5751 1.2073 -0.0053 5 6 4.2762 0.0002 0.0010 6 6 5.7546 0.0002 0.0010 7 8 6.3624 -0.6318 0.8429 8 7 6.4285 0.7009 -0.9324 9 6 7.8852 0.7039 -1.1035 10 6 8.2230 1.6456 -2.2706 11 1 9.1098 2.2493 -2.0776 12 6 8.3209 0.8307 -3.5701 13 7 7.4503 1.4615 -4.5673 14 6 7.2584 1.0141 -5.8472 15 1 6.5953 1.5476 -6.5121 16 6 7.9161 -0.1253 -6.2902 17 7 8.7238 -0.7758 -5.4797 18 14 7.6548 -0.7352 -8.0363 19 1 6.7061 0.1658 -8.7387 20 1 8.9535 -0.7458 -8.7564 21 1 7.0967 -2.1109 -8.0017 22 6 6.8173 2.6476 -3.9792 23 6 6.9398 2.5034 -2.4515 24 1 6.9869 3.4623 -1.9354 25 6 5.8193 1.5757 -1.9413 26 6 3.5754 -1.2067 0.0069 27 6 4.3240 -2.5146 0.0143 28 6 2.1956 -1.1998 0.0058 29 1 -0.3634 0.0054 1.0277 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3634 -0.8927 -0.5092 32 1 1.6522 2.1334 -0.0004 33 1 4.1116 2.1446 -0.0099 34 1 8.3628 1.0613 -0.1912 35 1 8.2318 -0.3042 -1.3307 36 1 9.3504 0.8296 -3.9278 37 1 7.9924 -0.1927 -3.3889 38 1 9.1831 -1.5722 -5.7891 39 1 5.7668 2.6909 -4.2666 40 1 7.3327 3.5488 -4.3113 41 1 5.4222 0.9788 -2.7623 42 1 5.0227 2.1675 -1.4902 43 1 4.4380 -2.8621 1.0411 44 1 3.7673 -3.2551 -0.5601 45 1 5.3080 -2.3726 -0.4326 46 1 1.6521 -2.1330 0.0099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049198110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:07 Heat of formation + Delta-G solvation = -1.178185 kcal Electronic energy + Delta-G solvation = -26779.780373 eV Core-core repulsion = 23247.839704 eV Total energy + Delta-G solvation = -3531.940669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85063 -40.45881 -39.17364 -36.62437 -34.45216 -34.18329 -33.23684 -31.75117 -31.13615 -28.60508 -28.20163 -27.11618 -27.02613 -24.77825 -23.31581 -22.28549 -21.78641 -20.80082 -20.50382 -18.93213 -18.29485 -17.68725 -16.94782 -16.81540 -16.49176 -16.00856 -15.54304 -15.48778 -15.17965 -14.97418 -14.62800 -14.33660 -14.21522 -14.15770 -14.01280 -13.63335 -13.53035 -13.41661 -13.24132 -13.07400 -12.88782 -12.76209 -12.69373 -12.51337 -12.45925 -11.95464 -11.93976 -11.90093 -11.87013 -11.53162 -11.34856 -11.01617 -10.70182 -9.84713 -9.71438 -9.50893 -8.87254 -7.85345 -5.20187 0.00004 0.38013 1.44844 1.45350 1.52958 1.55681 1.96665 2.49064 2.72096 3.24863 3.33532 3.49794 3.64854 3.75967 3.80883 3.90282 3.92647 3.97611 4.23856 4.28398 4.30227 4.41464 4.50148 4.53080 4.56775 4.62701 4.69161 4.70098 4.79005 4.82224 4.89601 4.91034 4.95324 5.04197 5.07509 5.14606 5.23366 5.27074 5.32611 5.38770 5.48535 5.49867 5.60080 5.62889 5.76680 5.97758 6.21169 6.42088 6.98464 7.11124 7.80653 8.41776 9.24931 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.004043 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.909796 B = 6923.209971 C = 7448.755383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 C -0.129 4.129 4 C -0.085 4.085 5 C -0.155 4.155 6 C 0.571 3.429 7 O -0.578 6.578 8 N -0.603 5.603 9 C 0.124 3.876 10 C -0.111 4.111 11 H 0.118 0.882 12 C 0.198 3.802 13 N -0.624 5.624 14 C -0.237 4.237 15 H 0.087 0.913 16 C -0.067 4.067 17 N -0.952 5.952 18 Si 0.974 3.026 19 H -0.261 1.261 20 H -0.293 1.293 21 H -0.297 1.297 22 C 0.139 3.861 23 C -0.093 4.093 24 H 0.140 0.860 25 C 0.114 3.886 26 C -0.054 4.054 27 C -0.113 4.113 28 C -0.132 4.132 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.005 0.995 37 H 0.005 0.995 38 H 0.244 0.756 39 H 0.047 0.953 40 H 0.034 0.966 41 H 0.044 0.956 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.034 0.966 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.790 6.806 12.469 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.103 4.103 5 C -0.158 4.158 6 C 0.361 3.639 7 O -0.459 6.459 8 N -0.335 5.335 9 C 0.001 3.999 10 C -0.131 4.131 11 H 0.136 0.864 12 C 0.073 3.927 13 N -0.350 5.350 14 C -0.366 4.366 15 H 0.105 0.895 16 C -0.260 4.260 17 N -0.602 5.602 18 Si 0.803 3.197 19 H -0.185 1.185 20 H -0.220 1.220 21 H -0.225 1.225 22 C 0.014 3.986 23 C -0.112 4.112 24 H 0.157 0.843 25 C -0.009 4.009 26 C -0.055 4.055 27 C -0.170 4.170 28 C -0.149 4.149 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.177 0.823 33 H 0.162 0.838 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.053 0.947 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.450 6.294 12.810 21.033 hybrid contribution 0.869 -1.120 -1.182 1.846 sum -14.580 5.174 11.628 19.354 Atomic orbital electron populations 1.20904 0.88387 1.04157 1.03605 1.20500 0.98045 0.92497 0.95365 1.21320 0.93006 0.99225 1.01086 1.21450 0.95303 0.96313 0.97272 1.19729 0.91062 0.95854 1.09192 1.18431 0.88047 0.77610 0.79797 1.90723 1.70912 1.45078 1.39146 1.48283 1.07806 1.45777 1.31604 1.21732 0.80530 0.99146 0.98493 1.23013 0.99744 0.96471 0.93865 0.86379 1.20748 0.92878 0.93121 0.85941 1.44516 1.51658 1.28727 1.10092 1.19500 1.21939 1.06947 0.88184 0.89545 1.25626 0.99747 0.98611 1.02011 1.70213 1.33839 1.20273 1.35840 0.85060 0.77206 0.77634 0.79782 1.18548 1.22035 1.22472 1.21403 0.96725 0.89481 0.91010 1.23037 0.92768 0.99129 0.96279 0.84253 1.22275 0.96865 0.91613 0.90099 1.20048 0.94771 0.93919 0.96750 1.20793 0.98803 0.94450 1.02929 1.21106 0.91924 0.99585 1.02335 0.89569 0.89879 0.90633 0.82307 0.83827 0.90135 0.94161 0.97660 0.97681 0.94712 0.93441 0.94798 0.93756 0.87584 0.90221 0.89518 0.94690 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.00 71.23 0.71 -0.51 16 2 C -0.06 -1.15 5.89 -19.81 -0.12 -1.26 16 3 C -0.13 -2.31 9.68 22.23 0.22 -2.09 16 4 C -0.09 -1.95 8.22 22.52 0.19 -1.77 16 5 C -0.16 -4.71 5.29 -20.09 -0.11 -4.81 16 6 C 0.57 20.78 6.29 86.79 0.55 21.33 16 7 O -0.58 -24.56 16.19 -3.90 -0.06 -24.63 16 8 N -0.60 -20.99 3.31 -820.41 -2.72 -23.70 16 9 C 0.12 4.44 6.24 86.59 0.54 4.98 16 10 C -0.11 -3.92 4.02 -9.49 -0.04 -3.96 16 11 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 12 C 0.20 9.74 4.75 86.59 0.41 10.15 16 13 N -0.62 -31.01 3.37 -697.86 -2.35 -33.36 16 14 C -0.24 -13.05 10.25 84.03 0.86 -12.18 16 15 H 0.09 4.51 7.83 -2.91 -0.02 4.48 16 16 C -0.07 -3.84 5.48 84.86 0.47 -3.38 16 17 N -0.95 -58.28 10.25 21.65 0.22 -58.06 16 18 Si 0.97 46.07 29.55 68.60 2.03 48.09 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 22 C 0.14 5.10 6.37 86.65 0.55 5.65 16 23 C -0.09 -2.73 4.19 -9.25 -0.04 -2.77 16 24 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 25 C 0.11 3.48 5.66 86.72 0.49 3.97 16 26 C -0.05 -1.53 5.91 -19.61 -0.12 -1.65 16 27 C -0.11 -3.29 9.22 71.23 0.66 -2.63 16 28 C -0.13 -2.85 9.35 22.23 0.21 -2.65 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 31 H 0.07 0.73 8.08 -2.38 -0.02 0.71 16 32 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.14 2.73 6.50 -2.91 -0.02 2.71 16 34 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 35 H 0.04 1.70 7.44 -2.39 -0.02 1.68 16 36 H 0.01 0.29 7.46 -2.39 -0.02 0.27 16 37 H 0.01 0.29 6.51 -2.39 -0.02 0.27 16 38 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.05 1.66 7.94 -2.39 -0.02 1.64 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.04 1.68 7.72 -2.39 -0.02 1.66 16 42 H 0.11 2.46 5.09 -2.38 -0.01 2.45 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.09 2.07 8.11 -2.39 -0.02 2.05 16 45 H 0.03 1.24 6.57 -2.39 -0.02 1.23 16 46 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -75.29 361.40 3.52 -71.77 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.97 Total: 13.46 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.43 Total: 6.42 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -4.85 Total: -115.12 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.06 Total: -24.63 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -75.29 3.52 -71.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049198110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.594 kcal (2) G-P(sol) polarization free energy of solvation -75.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds