Wall clock time and date at job start Fri Apr 10 2020 23:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38384 * 119.85814 * 2 1 4 4 C 1.37935 * 120.14273 * 180.27601 * 3 2 1 5 5 C 1.39596 * 119.85447 * 359.74840 * 4 3 2 6 6 C 1.47849 * 120.14229 * 180.02562 * 5 4 3 7 7 O 1.21550 * 119.99834 * 204.81497 * 6 5 4 8 8 N 1.34772 * 119.99785 * 24.81942 * 6 5 4 9 9 C 1.46743 * 125.33320 * 5.17415 * 8 6 5 10 10 C 1.54099 * 106.63669 * 161.58253 * 9 8 6 11 11 H 1.08997 * 113.49229 * 151.36856 * 10 9 8 12 12 C 1.53965 * 109.44407 * 278.64139 * 10 9 8 13 13 N 1.46779 * 106.62587 * 138.17555 * 12 10 9 14 14 C 1.36937 * 125.33924 * 161.49675 * 13 12 10 15 15 H 1.08002 * 119.99960 * 5.02393 * 14 13 12 16 16 C 1.38808 * 120.00146 * 185.01260 * 14 13 12 17 17 N 1.31624 * 119.99891 * 354.94792 * 16 14 13 18 18 Si 1.86805 * 119.99950 * 174.94656 * 16 14 13 19 19 H 1.48504 * 109.46752 * 95.00248 * 18 16 14 20 20 H 1.48496 * 109.46783 * 214.99830 * 18 16 14 21 21 H 1.48495 * 109.47019 * 335.00288 * 18 16 14 22 22 C 1.48239 * 109.51683 * 341.52807 * 13 12 10 23 23 C 1.53725 * 107.13631 * 0.46900 * 22 13 12 24 24 H 1.08996 * 112.56270 * 140.21687 * 23 22 13 25 25 C 1.46637 * 125.32553 * 185.47601 * 8 6 5 26 26 C 1.39559 * 119.71465 * 0.02562 * 5 4 3 27 27 C 1.37980 * 119.84787 * 359.97438 * 26 5 4 28 28 C 1.50699 * 119.92585 * 179.97438 * 27 26 5 29 29 H 1.08999 * 109.46751 * 270.23875 * 1 2 3 30 30 H 1.09001 * 109.46683 * 30.22805 * 1 2 3 31 31 H 1.08994 * 109.47243 * 150.23204 * 1 2 3 32 32 H 1.07993 * 119.92414 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.07048 * 179.72124 * 4 3 2 34 34 H 1.09006 * 110.00795 * 281.01099 * 9 8 6 35 35 H 1.09003 * 110.00557 * 42.37670 * 9 8 6 36 36 H 1.08996 * 110.02506 * 257.46576 * 12 10 9 37 37 H 1.08995 * 110.02865 * 18.88675 * 12 10 9 38 38 H 0.97001 * 119.99528 * 179.97438 * 17 16 14 39 39 H 1.08997 * 110.29726 * 241.03671 * 22 13 12 40 40 H 1.08990 * 110.03865 * 119.76383 * 22 13 12 41 41 H 1.09001 * 109.76742 * 300.44114 * 25 8 6 42 42 H 1.09008 * 109.76199 * 61.16007 * 25 8 6 43 43 H 1.07991 * 120.07477 * 180.02562 * 26 5 4 44 44 H 1.09001 * 109.47014 * 90.00273 * 28 27 26 45 45 H 1.08996 * 109.47351 * 330.00435 * 28 27 26 46 46 H 1.08995 * 109.47361 * 209.99630 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2001 0.0000 4 6 3.5753 1.2070 -0.0057 5 6 4.2762 -0.0002 -0.0063 6 6 5.7547 -0.0003 -0.0118 7 8 6.3607 -0.9566 -0.4542 8 7 6.4304 1.0599 0.4737 9 6 5.8247 2.2239 1.1306 10 6 6.9514 2.9236 1.9152 11 1 6.7997 3.9969 2.0293 12 6 7.1673 2.2001 3.2571 13 7 8.6185 2.1185 3.4615 14 6 9.2375 1.8841 4.6602 15 1 8.6486 1.6615 5.5377 16 6 10.6220 1.9324 4.7475 17 7 11.3444 2.1045 3.6607 18 14 11.4601 1.7530 6.4074 19 1 11.8506 0.3352 6.6140 20 1 12.6717 2.6107 6.4453 21 1 10.5241 2.1703 7.4821 22 6 9.3133 2.3298 2.1692 23 6 8.2291 2.5670 1.1055 24 1 8.5060 3.3431 0.3920 25 6 7.8856 1.2337 0.4226 26 6 3.5754 -1.2071 -0.0015 27 6 2.1956 -1.1999 0.0042 28 6 1.4370 -2.5020 0.0088 29 1 -0.3633 0.0043 1.0277 30 1 -0.3633 0.8880 -0.5174 31 1 -0.3633 -0.8920 -0.5102 32 1 1.6525 2.1333 0.0004 33 1 4.1118 2.1443 -0.0103 34 1 5.4114 2.9010 0.3830 35 1 5.0406 1.8998 1.8149 36 1 6.7078 2.7684 4.0657 37 1 6.7395 1.1985 3.2142 38 1 12.3118 2.1386 3.7218 39 1 9.9004 1.4496 1.9072 40 1 9.9641 3.2017 2.2333 41 1 8.3735 0.4135 0.9492 42 1 8.2180 1.2549 -0.6154 43 1 4.1117 -2.1444 -0.0014 44 1 1.2584 -2.8148 1.0376 45 1 2.0210 -3.2645 -0.5065 46 1 0.4830 -2.3686 -0.5011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049198835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:10 Heat of formation + Delta-G solvation = 25.063378 kcal Electronic energy + Delta-G solvation = -26288.971324 eV Core-core repulsion = 22758.168574 eV Total energy + Delta-G solvation = -3530.802750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64824 -39.34818 -37.90598 -35.03333 -33.66697 -32.31638 -32.13590 -30.28624 -29.65344 -28.02602 -27.07560 -25.58423 -25.21446 -23.39256 -22.24241 -21.34497 -20.17861 -19.49476 -19.35819 -17.21155 -16.60037 -16.17894 -15.95252 -15.60507 -15.20105 -14.70563 -14.58457 -14.13405 -14.08870 -13.76006 -13.29083 -13.16211 -13.06567 -12.94865 -12.82527 -12.74418 -12.26167 -12.06239 -11.91118 -11.75465 -11.70358 -11.49676 -11.39443 -11.02891 -10.87014 -10.80225 -10.36886 -10.11925 -10.01029 -9.90577 -9.72743 -9.64577 -8.97495 -8.74343 -8.60514 -8.35308 -6.83729 -5.73130 -3.05666 0.80202 1.21530 2.85600 3.15424 3.40390 3.45718 3.47629 3.72544 4.44919 4.48064 4.55970 4.60687 4.72157 4.81545 4.89239 5.00257 5.07502 5.16923 5.23514 5.36008 5.41330 5.42722 5.50318 5.52988 5.55940 5.60116 5.62129 5.70367 5.75478 5.86917 5.92658 5.94217 6.09933 6.18740 6.24287 6.26818 6.33622 6.40613 6.55494 6.62053 6.68378 6.77992 6.83777 7.50364 7.57462 7.70621 7.79630 8.23475 8.30959 9.19657 9.81449 10.46028 11.39079 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.003016 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.802124 B = 9280.555303 C = 9405.943023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.069 4.069 3 C -0.126 4.126 4 C -0.101 4.101 5 C -0.125 4.125 6 C 0.569 3.431 7 O -0.541 6.541 8 N -0.602 5.602 9 C 0.107 3.893 10 C -0.110 4.110 11 H 0.100 0.900 12 C 0.146 3.854 13 N -0.604 5.604 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.921 5.921 18 Si 0.911 3.089 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.187 3.813 23 C -0.123 4.123 24 H 0.088 0.912 25 C 0.118 3.882 26 C -0.060 4.060 27 C -0.098 4.098 28 C -0.116 4.116 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.016 0.984 38 H 0.253 0.747 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.132 0.868 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.237 -0.396 -9.399 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.069 4.069 3 C -0.143 4.143 4 C -0.119 4.119 5 C -0.128 4.128 6 C 0.358 3.642 7 O -0.419 6.419 8 N -0.335 5.335 9 C -0.016 4.016 10 C -0.130 4.130 11 H 0.118 0.882 12 C 0.020 3.980 13 N -0.331 5.331 14 C -0.357 4.357 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.063 3.937 23 C -0.143 4.143 24 H 0.107 0.893 25 C -0.003 4.003 26 C -0.078 4.078 27 C -0.098 4.098 28 C -0.173 4.173 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.150 0.850 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.710 -0.986 -9.573 22.837 hybrid contribution 0.614 -0.007 0.882 1.074 sum -20.097 -0.993 -8.692 21.918 Atomic orbital electron populations 1.20910 0.91142 1.02976 1.02577 1.19954 0.96111 0.92675 0.98168 1.20961 0.93852 0.97590 1.01945 1.21890 0.94554 0.98117 0.97321 1.19879 0.92747 0.94444 1.05713 1.17955 0.86761 0.81364 0.78085 1.90768 1.69985 1.33483 1.47685 1.48117 1.08429 1.19392 1.57519 1.22300 0.96721 0.87176 0.95399 1.23000 0.93553 0.99886 0.96568 0.88172 1.21212 0.87475 0.96205 0.93113 1.44596 0.98931 1.84617 1.04975 1.19048 0.89651 1.40964 0.86016 0.90494 1.24805 0.96136 1.02017 0.97379 1.69948 1.04844 1.56384 1.25728 0.86110 0.79103 0.77464 0.83166 1.21689 1.21633 1.20650 1.21334 0.89910 1.00920 0.81571 1.23148 0.97613 0.95182 0.98384 0.89346 1.22014 0.79220 0.98793 1.00319 1.21106 0.93129 0.97636 0.95971 1.19695 0.93274 0.95201 1.01611 1.20858 0.99944 0.93928 1.02552 0.90852 0.91453 0.91001 0.85522 0.84165 0.91515 0.90470 0.94628 0.96606 0.93708 0.93382 0.92816 0.90482 0.92082 0.84983 0.90999 0.91385 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.59 36.01 0.35 -0.42 16 2 C -0.07 -0.65 5.89 -104.53 -0.62 -1.27 16 3 C -0.13 -1.21 9.68 -39.64 -0.38 -1.59 16 4 C -0.10 -1.15 8.18 -39.19 -0.32 -1.47 16 5 C -0.12 -1.77 5.67 -104.97 -0.60 -2.36 16 6 C 0.57 9.89 7.63 -12.33 -0.09 9.80 16 7 O -0.54 -11.25 16.92 5.32 0.09 -11.16 16 8 N -0.60 -9.92 3.30 -173.38 -0.57 -10.49 16 9 C 0.11 1.44 4.23 -3.34 -0.01 1.43 16 10 C -0.11 -1.76 4.17 -88.26 -0.37 -2.13 16 11 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 12 C 0.15 2.97 6.49 -3.39 -0.02 2.95 16 13 N -0.60 -15.26 3.42 -170.57 -0.58 -15.84 16 14 C -0.23 -6.37 10.24 -15.06 -0.15 -6.53 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 16 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 17 N -0.92 -26.87 10.28 55.49 0.57 -26.30 16 18 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 C 0.19 4.41 4.85 -2.71 -0.01 4.39 16 23 C -0.12 -2.19 3.97 -88.60 -0.35 -2.54 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 25 C 0.12 2.13 6.21 -3.61 -0.02 2.11 16 26 C -0.06 -0.78 9.24 -39.18 -0.36 -1.14 16 27 C -0.10 -1.03 5.87 -104.68 -0.61 -1.65 16 28 C -0.12 -0.90 9.60 36.01 0.35 -0.56 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.07 0.39 5.92 -51.93 -0.31 0.09 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.14 1.41 4.42 -52.49 -0.23 1.18 16 34 H 0.07 0.71 6.38 -51.93 -0.33 0.38 16 35 H 0.08 0.99 6.96 -51.93 -0.36 0.63 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.02 0.35 7.72 -51.93 -0.40 -0.05 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.05 1.27 6.90 -51.93 -0.36 0.91 16 40 H 0.05 1.39 7.27 -51.93 -0.38 1.01 16 41 H 0.08 1.64 7.30 -51.93 -0.38 1.26 16 42 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 43 H 0.13 1.77 7.85 -52.49 -0.41 1.36 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 46 H 0.07 0.43 5.92 -51.93 -0.31 0.13 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -33.07 357.68 -10.28 -43.35 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.81 Total: -0.80 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -3.34 Total: -1.29 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.59 Total: -52.64 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.07 -10.28 -43.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049198835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.413 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds