Wall clock time and date at job start Fri Apr 10 2020 23:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38384 * 119.85814 * 2 1 4 4 C 1.37935 * 120.14273 * 180.27601 * 3 2 1 5 5 C 1.39596 * 119.85447 * 359.74840 * 4 3 2 6 6 C 1.47849 * 120.14229 * 180.02562 * 5 4 3 7 7 O 1.21550 * 119.99834 * 204.81497 * 6 5 4 8 8 N 1.34772 * 119.99785 * 24.81942 * 6 5 4 9 9 C 1.46743 * 125.33320 * 5.17415 * 8 6 5 10 10 C 1.54099 * 106.63669 * 161.58253 * 9 8 6 11 11 H 1.08997 * 113.49229 * 151.36856 * 10 9 8 12 12 C 1.53965 * 109.44407 * 278.64139 * 10 9 8 13 13 N 1.46779 * 106.62587 * 138.17555 * 12 10 9 14 14 C 1.36937 * 125.33924 * 161.49675 * 13 12 10 15 15 H 1.08002 * 119.99960 * 5.02393 * 14 13 12 16 16 C 1.38808 * 120.00146 * 185.01260 * 14 13 12 17 17 N 1.31624 * 119.99891 * 354.94792 * 16 14 13 18 18 Si 1.86805 * 119.99950 * 174.94656 * 16 14 13 19 19 H 1.48504 * 109.46752 * 95.00248 * 18 16 14 20 20 H 1.48496 * 109.46783 * 214.99830 * 18 16 14 21 21 H 1.48495 * 109.47019 * 335.00288 * 18 16 14 22 22 C 1.48239 * 109.51683 * 341.52807 * 13 12 10 23 23 C 1.53725 * 107.13631 * 0.46900 * 22 13 12 24 24 H 1.08996 * 112.56270 * 140.21687 * 23 22 13 25 25 C 1.46637 * 125.32553 * 185.47601 * 8 6 5 26 26 C 1.39559 * 119.71465 * 0.02562 * 5 4 3 27 27 C 1.37980 * 119.84787 * 359.97438 * 26 5 4 28 28 C 1.50699 * 119.92585 * 179.97438 * 27 26 5 29 29 H 1.08999 * 109.46751 * 270.23875 * 1 2 3 30 30 H 1.09001 * 109.46683 * 30.22805 * 1 2 3 31 31 H 1.08994 * 109.47243 * 150.23204 * 1 2 3 32 32 H 1.07993 * 119.92414 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.07048 * 179.72124 * 4 3 2 34 34 H 1.09006 * 110.00795 * 281.01099 * 9 8 6 35 35 H 1.09003 * 110.00557 * 42.37670 * 9 8 6 36 36 H 1.08996 * 110.02506 * 257.46576 * 12 10 9 37 37 H 1.08995 * 110.02865 * 18.88675 * 12 10 9 38 38 H 0.97001 * 119.99528 * 179.97438 * 17 16 14 39 39 H 1.08997 * 110.29726 * 241.03671 * 22 13 12 40 40 H 1.08990 * 110.03865 * 119.76383 * 22 13 12 41 41 H 1.09001 * 109.76742 * 300.44114 * 25 8 6 42 42 H 1.09008 * 109.76199 * 61.16007 * 25 8 6 43 43 H 1.07991 * 120.07477 * 180.02562 * 26 5 4 44 44 H 1.09001 * 109.47014 * 90.00273 * 28 27 26 45 45 H 1.08996 * 109.47351 * 330.00435 * 28 27 26 46 46 H 1.08995 * 109.47361 * 209.99630 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2001 0.0000 4 6 3.5753 1.2070 -0.0057 5 6 4.2762 -0.0002 -0.0063 6 6 5.7547 -0.0003 -0.0118 7 8 6.3607 -0.9566 -0.4542 8 7 6.4304 1.0599 0.4737 9 6 5.8247 2.2239 1.1306 10 6 6.9514 2.9236 1.9152 11 1 6.7997 3.9969 2.0293 12 6 7.1673 2.2001 3.2571 13 7 8.6185 2.1185 3.4615 14 6 9.2375 1.8841 4.6602 15 1 8.6486 1.6615 5.5377 16 6 10.6220 1.9324 4.7475 17 7 11.3444 2.1045 3.6607 18 14 11.4601 1.7530 6.4074 19 1 11.8506 0.3352 6.6140 20 1 12.6717 2.6107 6.4453 21 1 10.5241 2.1703 7.4821 22 6 9.3133 2.3298 2.1692 23 6 8.2291 2.5670 1.1055 24 1 8.5060 3.3431 0.3920 25 6 7.8856 1.2337 0.4226 26 6 3.5754 -1.2071 -0.0015 27 6 2.1956 -1.1999 0.0042 28 6 1.4370 -2.5020 0.0088 29 1 -0.3633 0.0043 1.0277 30 1 -0.3633 0.8880 -0.5174 31 1 -0.3633 -0.8920 -0.5102 32 1 1.6525 2.1333 0.0004 33 1 4.1118 2.1443 -0.0103 34 1 5.4114 2.9010 0.3830 35 1 5.0406 1.8998 1.8149 36 1 6.7078 2.7684 4.0657 37 1 6.7395 1.1985 3.2142 38 1 12.3118 2.1386 3.7218 39 1 9.9004 1.4496 1.9072 40 1 9.9641 3.2017 2.2333 41 1 8.3735 0.4135 0.9492 42 1 8.2180 1.2549 -0.6154 43 1 4.1117 -2.1444 -0.0014 44 1 1.2584 -2.8148 1.0376 45 1 2.0210 -3.2645 -0.5065 46 1 0.4830 -2.3686 -0.5011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049198835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:09 Heat of formation + Delta-G solvation = 5.309052 kcal Electronic energy + Delta-G solvation = -26289.827936 eV Core-core repulsion = 22758.168574 eV Total energy + Delta-G solvation = -3531.659362 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.87968 -40.42497 -39.26649 -36.69012 -34.68895 -33.87318 -33.06722 -31.82115 -31.31052 -28.81621 -28.10455 -27.30008 -26.58604 -24.85892 -23.09490 -22.47831 -21.82355 -20.88338 -20.63140 -18.94720 -18.00262 -17.39875 -17.16603 -16.78578 -16.54026 -16.17754 -15.71744 -15.46594 -15.09950 -15.01547 -14.74790 -14.44681 -14.25054 -14.06181 -13.62388 -13.57284 -13.49812 -13.43494 -13.27678 -13.22313 -12.81676 -12.72900 -12.70883 -12.58465 -12.23761 -12.01705 -11.90766 -11.86185 -11.66455 -11.60590 -11.38269 -11.06414 -10.71764 -9.88459 -9.68831 -9.50021 -8.90543 -7.87888 -5.22426 -0.12036 0.39696 1.43982 1.45367 1.54898 1.68252 1.91566 2.47809 2.79087 3.28550 3.30743 3.43396 3.61732 3.75745 3.86981 3.91108 3.95106 4.00517 4.16408 4.22004 4.27661 4.35996 4.49232 4.52749 4.65042 4.71851 4.74345 4.77359 4.79764 4.82797 4.89841 4.96810 4.99135 5.00026 5.09343 5.18040 5.20100 5.33640 5.34700 5.40194 5.42543 5.46486 5.58264 5.66531 5.75883 6.00408 6.17778 6.42238 6.99338 7.07613 7.75806 8.39353 9.22746 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.003016 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.802124 B = 9280.555303 C = 9405.943023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.122 4.122 4 C -0.098 4.098 5 C -0.151 4.151 6 C 0.562 3.438 7 O -0.593 6.593 8 N -0.604 5.604 9 C 0.110 3.890 10 C -0.094 4.094 11 H 0.136 0.864 12 C 0.140 3.860 13 N -0.627 5.627 14 C -0.245 4.245 15 H 0.079 0.921 16 C -0.065 4.065 17 N -0.949 5.949 18 Si 0.977 3.023 19 H -0.292 1.292 20 H -0.290 1.290 21 H -0.266 1.266 22 C 0.195 3.805 23 C -0.109 4.109 24 H 0.123 0.877 25 C 0.124 3.876 26 C -0.083 4.083 27 C -0.104 4.104 28 C -0.116 4.116 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.000 1.000 38 H 0.247 0.753 39 H 0.003 0.997 40 H 0.025 0.975 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.318 1.850 -9.564 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.115 4.115 5 C -0.154 4.154 6 C 0.354 3.646 7 O -0.475 6.475 8 N -0.335 5.335 9 C -0.011 4.011 10 C -0.113 4.113 11 H 0.154 0.846 12 C 0.014 3.986 13 N -0.354 5.354 14 C -0.374 4.374 15 H 0.097 0.903 16 C -0.258 4.258 17 N -0.598 5.598 18 Si 0.805 3.195 19 H -0.220 1.220 20 H -0.217 1.217 21 H -0.191 1.191 22 C 0.071 3.929 23 C -0.128 4.128 24 H 0.141 0.859 25 C 0.001 3.999 26 C -0.102 4.102 27 C -0.104 4.104 28 C -0.173 4.173 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.018 0.982 38 H 0.056 0.944 39 H 0.021 0.979 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.129 0.871 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.846 1.287 -9.723 26.712 hybrid contribution 1.801 -0.785 0.956 2.185 sum -23.045 0.502 -8.767 24.662 Atomic orbital electron populations 1.21005 0.88481 1.04396 1.03653 1.20426 0.98030 0.92078 0.95896 1.21387 0.93148 0.99100 1.00275 1.22044 0.95471 0.97303 0.96725 1.19726 0.90488 0.96192 1.08998 1.18629 0.88315 0.80581 0.77074 1.90724 1.71327 1.35379 1.50092 1.48196 1.07597 1.20308 1.57394 1.22546 0.95690 0.86456 0.96404 1.23045 0.93231 1.01581 0.93452 0.84576 1.21415 0.84631 0.96162 0.96348 1.44937 1.01322 1.84353 1.04756 1.19430 0.90245 1.40418 0.87269 0.90313 1.25647 0.96878 1.02457 1.00796 1.70174 1.04529 1.57531 1.27567 0.85085 0.77987 0.76922 0.79480 1.21980 1.21679 1.19057 1.21043 0.91272 0.97577 0.83038 1.22998 0.96591 0.95802 0.97434 0.85858 1.21755 0.80526 0.97355 1.00214 1.21131 0.94546 0.96787 0.97706 1.19987 0.92236 0.97157 1.00978 1.20923 1.00514 0.92556 1.03264 0.89728 0.89722 0.90012 0.82004 0.82496 0.86727 0.89253 0.93486 0.98202 0.94351 0.97914 0.95643 0.95316 0.91044 0.87077 0.90298 0.91861 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.59 71.24 0.68 -0.28 16 2 C -0.06 -0.98 5.89 -19.80 -0.12 -1.10 16 3 C -0.12 -1.80 9.68 22.23 0.22 -1.59 16 4 C -0.10 -1.91 8.18 22.53 0.18 -1.73 16 5 C -0.15 -4.22 5.67 -20.09 -0.11 -4.33 16 6 C 0.56 20.11 7.63 86.79 0.66 20.77 16 7 O -0.59 -26.44 16.92 -3.87 -0.07 -26.50 16 8 N -0.60 -19.67 3.30 -820.74 -2.71 -22.38 16 9 C 0.11 2.61 4.23 86.70 0.37 2.98 16 10 C -0.09 -2.74 4.17 -9.27 -0.04 -2.78 16 11 H 0.14 3.13 8.14 -2.39 -0.02 3.11 16 12 C 0.14 5.59 6.49 86.65 0.56 6.16 16 13 N -0.63 -32.55 3.42 -693.57 -2.37 -34.92 16 14 C -0.24 -14.01 10.24 84.03 0.86 -13.15 16 15 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 16 C -0.06 -3.75 5.48 84.86 0.47 -3.29 16 17 N -0.95 -57.88 10.28 21.65 0.22 -57.66 16 18 Si 0.98 46.65 29.56 68.60 2.03 48.67 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 22 C 0.20 9.62 4.85 86.29 0.42 10.04 16 23 C -0.11 -3.79 3.97 -9.49 -0.04 -3.82 16 24 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 25 C 0.12 4.61 6.21 86.59 0.54 5.15 16 26 C -0.08 -2.21 9.24 22.53 0.21 -2.00 16 27 C -0.10 -2.03 5.87 -19.90 -0.12 -2.14 16 28 C -0.12 -1.61 9.60 71.24 0.68 -0.93 16 29 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 31 H 0.08 0.53 5.92 -2.39 -0.01 0.51 16 32 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 33 H 0.16 2.39 4.42 -2.91 -0.01 2.38 16 34 H 0.12 1.76 6.38 -2.38 -0.02 1.74 16 35 H 0.09 1.98 6.96 -2.39 -0.02 1.96 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.00 0.01 7.72 -2.39 -0.02 -0.01 16 38 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 39 H 0.00 0.15 6.90 -2.39 -0.02 0.14 16 40 H 0.03 1.38 7.27 -2.39 -0.02 1.36 16 41 H 0.03 1.33 7.30 -2.39 -0.02 1.31 16 42 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 43 H 0.11 3.29 7.85 -2.92 -0.02 3.27 16 44 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 46 H 0.09 0.85 5.92 -2.39 -0.01 0.84 16 Total: -1.00 -79.27 357.68 3.51 -75.76 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.98 Total: 9.07 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 5.43 Total: 7.97 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -4.86 Total: -114.96 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.07 Total: -26.50 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -79.27 3.51 -75.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049198835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.066 kcal (2) G-P(sol) polarization free energy of solvation -79.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds