Wall clock time and date at job start Fri Apr 10 2020 23:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38213 * 119.99666 * 179.74118 * 3 2 1 5 5 C 1.38251 * 120.00231 * 0.53892 * 4 3 2 6 6 C 1.38220 * 120.00091 * 359.73561 * 5 4 3 7 7 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 8 8 C 1.50699 * 119.99714 * 359.97438 * 7 2 1 9 9 C 1.50704 * 109.47202 * 85.00469 * 8 7 2 10 10 O 1.21276 * 119.99719 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99919 * 179.97438 * 9 8 7 12 12 C 1.46668 * 125.33343 * 179.97438 * 11 9 8 13 13 C 1.53723 * 107.94120 * 180.52246 * 12 11 9 14 14 H 1.08994 * 112.56684 * 139.71593 * 13 12 11 15 15 C 1.53698 * 109.34198 * 266.25477 * 13 12 11 16 16 N 1.47164 * 107.73907 * 128.69377 * 15 13 12 17 17 C 1.36932 * 125.25891 * 180.36379 * 16 15 13 18 18 H 1.07995 * 120.00197 * 179.17514 * 17 16 15 19 19 C 1.38812 * 119.99717 * 359.17769 * 17 16 15 20 20 N 1.31620 * 120.00325 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00014 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47075 * 89.99946 * 21 19 17 23 23 H 1.48495 * 109.47475 * 209.99880 * 21 19 17 24 24 H 1.48502 * 109.47284 * 330.00153 * 21 19 17 25 25 C 1.46748 * 109.41170 * 359.65018 * 16 15 13 26 26 C 1.53934 * 106.72063 * 342.40767 * 25 16 15 27 27 H 1.08999 * 113.01343 * 150.82653 * 26 25 16 28 28 C 1.46775 * 125.34003 * 359.68976 * 11 9 8 29 29 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 32 32 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.99630 * 180.29748 * 4 3 2 34 34 H 1.08003 * 119.99982 * 179.76676 * 5 4 3 35 35 H 1.07998 * 120.00200 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47368 * 204.99777 * 8 7 2 37 37 H 1.09004 * 109.47778 * 325.00018 * 8 7 2 38 38 H 1.08997 * 109.77097 * 300.13776 * 12 11 9 39 39 H 1.08993 * 109.77339 * 60.89998 * 12 11 9 40 40 H 1.09008 * 109.75596 * 247.19949 * 15 13 12 41 41 H 1.08998 * 109.75460 * 7.91017 * 15 13 12 42 42 H 0.96998 * 120.00514 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.01368 * 223.09192 * 25 16 15 44 44 H 1.08997 * 110.00682 * 101.71975 * 25 16 15 45 45 H 1.08998 * 110.02416 * 280.79758 * 28 11 9 46 46 H 1.09000 * 110.02729 * 42.21367 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0054 5 6 4.2717 0.0000 -0.0004 6 6 3.5806 -1.1970 -0.0062 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0116 9 6 1.0857 -2.8686 -1.4286 10 8 1.4095 -2.1415 -2.3436 11 7 0.4048 -4.0045 -1.6789 12 6 -0.0042 -4.4731 -3.0072 13 6 -0.7641 -5.7974 -2.8289 14 1 -1.6321 -5.8730 -3.4838 15 6 0.2147 -6.9715 -2.9888 16 7 0.0519 -7.8531 -1.8218 17 6 0.7566 -9.0055 -1.5972 18 1 0.5769 -9.5826 -0.7023 19 6 1.7019 -9.4319 -2.5199 20 7 1.9206 -8.7288 -3.6109 21 14 2.6639 -11.0036 -2.2133 22 1 1.9331 -12.1541 -2.8027 23 1 4.0046 -10.8941 -2.8423 24 1 2.8186 -11.2120 -0.7512 25 6 -0.9706 -7.2961 -0.9286 26 6 -1.1448 -5.8181 -1.3222 27 1 -2.1485 -5.4406 -1.1268 28 6 -0.0383 -4.9695 -0.6657 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3633 0.8925 -0.5096 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 0.0103 34 1 5.3517 0.0000 0.0000 35 1 4.1206 -2.1323 -0.0103 36 1 2.0696 -3.2844 0.4188 37 1 0.5340 -2.3985 0.5787 38 1 -0.6554 -3.7343 -3.4744 39 1 0.8766 -4.6342 -3.6288 40 1 -0.0265 -7.5319 -3.8922 41 1 1.2355 -6.5944 -3.0506 42 1 2.5809 -9.0269 -4.2559 43 1 -0.6408 -7.3696 0.1077 44 1 -1.9115 -7.8304 -1.0598 45 1 0.7948 -5.6054 -0.3662 46 1 -0.4376 -4.4435 0.2015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049206477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:12 Heat of formation + Delta-G solvation = 15.651108 kcal Electronic energy + Delta-G solvation = -26367.931941 eV Core-core repulsion = 22836.721045 eV Total energy + Delta-G solvation = -3531.210897 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.39198 -39.41800 -37.93327 -34.89593 -33.38406 -32.38227 -32.12914 -30.44297 -29.43157 -28.06340 -26.74005 -25.50280 -25.29235 -23.04513 -22.08012 -20.97507 -20.12976 -19.31316 -19.02190 -17.12181 -16.69371 -16.40949 -16.15870 -15.63998 -15.15619 -14.76135 -14.56583 -14.27032 -13.81511 -13.62618 -13.23128 -13.16278 -13.02209 -12.97213 -12.68833 -12.34754 -12.10915 -12.04963 -11.91371 -11.86666 -11.49588 -11.47230 -11.01521 -10.98704 -10.91162 -10.83329 -10.42768 -10.12271 -10.10913 -9.87022 -9.68501 -9.62881 -8.80449 -8.63748 -8.58364 -8.29859 -6.87040 -5.75103 -3.09179 1.30726 1.38621 2.85107 3.24745 3.37820 3.42834 3.45093 3.78103 4.46621 4.60774 4.68643 4.73489 4.85851 4.91321 4.96688 5.12995 5.19100 5.24149 5.26792 5.43864 5.47859 5.49668 5.54129 5.57311 5.64365 5.66680 5.68937 5.74979 5.86088 5.96339 6.02264 6.11660 6.16493 6.27515 6.37217 6.43764 6.47895 6.53344 6.55765 6.61625 6.63590 6.78983 6.99215 7.53297 7.55127 7.78327 7.80384 8.22482 8.40411 9.18019 9.79109 10.42615 11.36285 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018982 B = 0.003246 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.722509 B = 8625.106897 C = 9365.452781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.103 4.103 7 C -0.062 4.062 8 C -0.101 4.101 9 C 0.528 3.472 10 O -0.538 6.538 11 N -0.609 5.609 12 C 0.121 3.879 13 C -0.123 4.123 14 H 0.090 0.910 15 C 0.185 3.815 16 N -0.603 5.603 17 C -0.231 4.231 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.146 3.854 26 C -0.111 4.111 27 H 0.088 0.912 28 C 0.111 3.889 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.253 0.747 43 H 0.037 0.963 44 H 0.021 0.979 45 H 0.079 0.921 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.365 16.605 9.020 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.138 4.138 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.062 4.062 8 C -0.140 4.140 9 C 0.316 3.684 10 O -0.416 6.416 11 N -0.342 5.342 12 C -0.001 4.001 13 C -0.143 4.143 14 H 0.108 0.892 15 C 0.061 3.939 16 N -0.330 5.330 17 C -0.359 4.359 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.020 3.980 26 C -0.131 4.131 27 H 0.107 0.893 28 C -0.012 4.012 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.039 0.961 45 H 0.097 0.903 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.976 16.931 8.428 19.145 hybrid contribution 0.612 -0.957 0.040 1.136 sum -2.364 15.974 8.468 18.233 Atomic orbital electron populations 1.20819 0.91485 1.03056 1.01882 1.19690 0.95872 0.92588 0.98847 1.20947 0.94275 0.97193 1.01615 1.21080 0.94294 0.97908 1.00539 1.21063 0.99733 0.92459 1.01124 1.21026 0.93462 0.98363 0.99208 1.19175 0.93481 0.93188 1.00374 1.20680 1.01876 0.96301 0.95170 1.20037 0.77623 0.79797 0.90927 1.90708 1.53650 1.50539 1.46666 1.48291 1.55460 1.21448 1.09049 1.21800 0.99054 0.94924 0.84352 1.23159 0.99412 0.95905 0.95826 0.89160 1.21209 0.94938 0.86999 0.90804 1.44348 1.42892 1.24901 1.20870 1.19024 1.14415 0.97914 1.04576 0.90390 1.24804 0.99591 0.99027 0.96869 1.69952 1.36775 1.38949 1.11076 0.86126 0.79338 0.82876 0.77442 1.21585 1.21696 1.20699 1.21142 0.92907 0.89556 0.94410 1.22925 0.97365 0.96957 0.95812 0.89326 1.22117 0.97834 0.90564 0.90673 0.91193 0.91578 0.91515 0.86286 0.86330 0.86194 0.86078 0.87991 0.88101 0.92438 0.90987 0.93549 0.93188 0.93683 0.94516 0.96143 0.90315 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.22 36.01 0.33 -0.86 16 2 C -0.07 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 4 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 5 C -0.13 -1.45 10.05 -39.58 -0.40 -1.84 16 6 C -0.10 -1.32 9.68 -39.58 -0.38 -1.70 16 7 C -0.06 -0.82 4.37 -104.63 -0.46 -1.28 16 8 C -0.10 -1.27 4.18 -29.03 -0.12 -1.39 16 9 C 0.53 8.63 7.05 -10.98 -0.08 8.55 16 10 O -0.54 -10.69 16.34 5.56 0.09 -10.60 16 11 N -0.61 -9.90 3.31 -172.20 -0.57 -10.47 16 12 C 0.12 2.09 6.23 -3.57 -0.02 2.07 16 13 C -0.12 -2.16 4.01 -88.60 -0.36 -2.52 16 14 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 15 C 0.19 4.29 4.77 -3.32 -0.02 4.27 16 16 N -0.60 -14.57 3.39 -171.50 -0.58 -15.15 16 17 C -0.23 -6.21 10.25 -15.06 -0.15 -6.36 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 20 N -0.92 -26.58 10.25 55.49 0.57 -26.01 16 21 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 C 0.15 2.76 6.41 -3.42 -0.02 2.74 16 26 C -0.11 -1.72 4.14 -88.26 -0.37 -2.08 16 27 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 28 C 0.11 1.64 5.88 -3.31 -0.02 1.62 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.76 6.16 -51.93 -0.32 0.44 16 31 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.10 1.18 8.05 -51.93 -0.42 0.76 16 37 H 0.10 1.03 6.73 -51.93 -0.35 0.68 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.40 7.44 -51.93 -0.39 1.01 16 40 H 0.05 1.21 7.40 -51.92 -0.38 0.83 16 41 H 0.05 1.32 6.58 -51.93 -0.34 0.97 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.04 0.66 7.97 -51.93 -0.41 0.25 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 1.34 7.76 -51.93 -0.40 0.94 16 46 H 0.06 0.75 7.61 -51.93 -0.40 0.35 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -32.37 364.37 -10.76 -43.13 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.18 Total: 0.88 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -3.55 Total: -3.99 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.58 Total: -51.63 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.37 -10.76 -43.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049206477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.778 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds