Wall clock time and date at job start Fri Apr 10 2020 23:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38213 * 119.99666 * 179.74118 * 3 2 1 5 5 C 1.38251 * 120.00231 * 0.53892 * 4 3 2 6 6 C 1.38220 * 120.00091 * 359.73561 * 5 4 3 7 7 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 8 8 C 1.50699 * 119.99714 * 359.97438 * 7 2 1 9 9 C 1.50704 * 109.47202 * 85.00469 * 8 7 2 10 10 O 1.21276 * 119.99719 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99919 * 179.97438 * 9 8 7 12 12 C 1.46668 * 125.33343 * 179.97438 * 11 9 8 13 13 C 1.53723 * 107.94120 * 180.52246 * 12 11 9 14 14 H 1.08994 * 112.56684 * 139.71593 * 13 12 11 15 15 C 1.53698 * 109.34198 * 266.25477 * 13 12 11 16 16 N 1.47164 * 107.73907 * 128.69377 * 15 13 12 17 17 C 1.36932 * 125.25891 * 180.36379 * 16 15 13 18 18 H 1.07995 * 120.00197 * 179.17514 * 17 16 15 19 19 C 1.38812 * 119.99717 * 359.17769 * 17 16 15 20 20 N 1.31620 * 120.00325 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00014 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47075 * 89.99946 * 21 19 17 23 23 H 1.48495 * 109.47475 * 209.99880 * 21 19 17 24 24 H 1.48502 * 109.47284 * 330.00153 * 21 19 17 25 25 C 1.46748 * 109.41170 * 359.65018 * 16 15 13 26 26 C 1.53934 * 106.72063 * 342.40767 * 25 16 15 27 27 H 1.08999 * 113.01343 * 150.82653 * 26 25 16 28 28 C 1.46775 * 125.34003 * 359.68976 * 11 9 8 29 29 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 32 32 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.99630 * 180.29748 * 4 3 2 34 34 H 1.08003 * 119.99982 * 179.76676 * 5 4 3 35 35 H 1.07998 * 120.00200 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47368 * 204.99777 * 8 7 2 37 37 H 1.09004 * 109.47778 * 325.00018 * 8 7 2 38 38 H 1.08997 * 109.77097 * 300.13776 * 12 11 9 39 39 H 1.08993 * 109.77339 * 60.89998 * 12 11 9 40 40 H 1.09008 * 109.75596 * 247.19949 * 15 13 12 41 41 H 1.08998 * 109.75460 * 7.91017 * 15 13 12 42 42 H 0.96998 * 120.00514 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.01368 * 223.09192 * 25 16 15 44 44 H 1.08997 * 110.00682 * 101.71975 * 25 16 15 45 45 H 1.08998 * 110.02416 * 280.79758 * 28 11 9 46 46 H 1.09000 * 110.02729 * 42.21367 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0054 5 6 4.2717 0.0000 -0.0004 6 6 3.5806 -1.1970 -0.0062 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0116 9 6 1.0857 -2.8686 -1.4286 10 8 1.4095 -2.1415 -2.3436 11 7 0.4048 -4.0045 -1.6789 12 6 -0.0042 -4.4731 -3.0072 13 6 -0.7641 -5.7974 -2.8289 14 1 -1.6321 -5.8730 -3.4838 15 6 0.2147 -6.9715 -2.9888 16 7 0.0519 -7.8531 -1.8218 17 6 0.7566 -9.0055 -1.5972 18 1 0.5769 -9.5826 -0.7023 19 6 1.7019 -9.4319 -2.5199 20 7 1.9206 -8.7288 -3.6109 21 14 2.6639 -11.0036 -2.2133 22 1 1.9331 -12.1541 -2.8027 23 1 4.0046 -10.8941 -2.8423 24 1 2.8186 -11.2120 -0.7512 25 6 -0.9706 -7.2961 -0.9286 26 6 -1.1448 -5.8181 -1.3222 27 1 -2.1485 -5.4406 -1.1268 28 6 -0.0383 -4.9695 -0.6657 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3633 0.8925 -0.5096 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 0.0103 34 1 5.3517 0.0000 0.0000 35 1 4.1206 -2.1323 -0.0103 36 1 2.0696 -3.2844 0.4188 37 1 0.5340 -2.3985 0.5787 38 1 -0.6554 -3.7343 -3.4744 39 1 0.8766 -4.6342 -3.6288 40 1 -0.0265 -7.5319 -3.8922 41 1 1.2355 -6.5944 -3.0506 42 1 2.5809 -9.0269 -4.2559 43 1 -0.6408 -7.3696 0.1077 44 1 -1.9115 -7.8304 -1.0598 45 1 0.7948 -5.6054 -0.3662 46 1 -0.4376 -4.4435 0.2015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049206477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:11 Heat of formation + Delta-G solvation = -2.545447 kcal Electronic energy + Delta-G solvation = -26368.721003 eV Core-core repulsion = 22836.721045 eV Total energy + Delta-G solvation = -3531.999958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64158 -40.50185 -39.24929 -36.53184 -34.35331 -34.04026 -33.13509 -31.90968 -31.06959 -29.11611 -27.70117 -27.05025 -26.89842 -24.53345 -23.00870 -21.99395 -21.74806 -20.74772 -20.24897 -18.84787 -18.14813 -17.48270 -17.22749 -16.91494 -16.37828 -16.23804 -15.74010 -15.62688 -15.51073 -14.74383 -14.53016 -14.39356 -14.12525 -14.04974 -13.86575 -13.59683 -13.39902 -13.26799 -13.17876 -13.07047 -12.90300 -12.82909 -12.73811 -12.64615 -11.98408 -11.89494 -11.84891 -11.84402 -11.82206 -11.49773 -11.33429 -10.99627 -10.68398 -9.69454 -9.63822 -9.45680 -8.86102 -7.84185 -5.18881 0.41863 0.51087 1.45805 1.47109 1.55642 1.59449 2.04118 2.50141 2.86849 3.33902 3.36039 3.57812 3.67605 3.80683 3.86482 3.94239 4.04317 4.09384 4.18093 4.28282 4.32904 4.35078 4.45480 4.51179 4.54103 4.61044 4.70914 4.75918 4.82697 4.84304 4.86416 4.94854 4.95822 5.07741 5.11988 5.16782 5.28071 5.32279 5.42715 5.49909 5.58478 5.62361 5.64434 5.73476 5.78382 6.15259 6.21664 6.54180 7.11371 7.13544 7.81565 8.43165 9.25859 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018982 B = 0.003246 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.722509 B = 8625.106897 C = 9365.452781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.131 4.131 4 C -0.123 4.123 5 C -0.138 4.138 6 C -0.126 4.126 7 C -0.085 4.085 8 C -0.091 4.091 9 C 0.525 3.475 10 O -0.580 6.580 11 N -0.611 5.611 12 C 0.125 3.875 13 C -0.113 4.113 14 H 0.113 0.887 15 C 0.199 3.801 16 N -0.624 5.624 17 C -0.235 4.235 18 H 0.087 0.913 19 C -0.069 4.069 20 N -0.953 5.953 21 Si 0.975 3.025 22 H -0.287 1.287 23 H -0.301 1.301 24 H -0.265 1.265 25 C 0.139 3.861 26 C -0.092 4.092 27 H 0.136 0.864 28 C 0.112 3.888 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.004 0.996 41 H 0.005 0.995 42 H 0.243 0.757 43 H 0.050 0.950 44 H 0.031 0.969 45 H 0.051 0.949 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 18.047 11.555 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.149 4.149 4 C -0.141 4.141 5 C -0.155 4.155 6 C -0.144 4.144 7 C -0.085 4.085 8 C -0.130 4.130 9 C 0.316 3.684 10 O -0.460 6.460 11 N -0.344 5.344 12 C 0.002 3.998 13 C -0.132 4.132 14 H 0.131 0.869 15 C 0.073 3.927 16 N -0.351 5.351 17 C -0.364 4.364 18 H 0.105 0.895 19 C -0.262 4.262 20 N -0.602 5.602 21 Si 0.804 3.196 22 H -0.214 1.214 23 H -0.227 1.227 24 H -0.190 1.190 25 C 0.014 3.986 26 C -0.112 4.112 27 H 0.154 0.846 28 C -0.010 4.010 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.154 0.846 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.844 18.364 11.019 21.957 hybrid contribution 1.192 -1.384 -0.746 1.973 sum -3.652 16.980 10.273 20.179 Atomic orbital electron populations 1.20842 0.90085 1.02818 1.03234 1.20037 0.97141 0.92647 0.98566 1.21315 0.94709 0.97890 1.00977 1.21452 0.94570 0.98689 0.99406 1.21356 1.00807 0.92420 1.00955 1.21233 0.93938 0.99003 1.00211 1.19360 0.93739 0.93863 1.01540 1.20687 1.03280 0.96368 0.92677 1.20738 0.76489 0.79074 0.92123 1.90681 1.55119 1.51907 1.48322 1.48392 1.55488 1.21645 1.08837 1.21635 0.97844 0.95280 0.85013 1.22990 0.98554 0.93204 0.98488 0.86934 1.20834 0.94219 0.88318 0.89291 1.44653 1.43723 1.24570 1.22151 1.19460 1.13932 0.98713 1.04338 0.89507 1.25631 1.01268 1.02220 0.97054 1.70205 1.37431 1.40564 1.12038 0.85124 0.77283 0.79321 0.77914 1.21391 1.22750 1.19013 1.21392 0.91604 0.91552 0.94047 1.22990 0.99915 0.94966 0.93291 0.84592 1.22184 0.96805 0.90325 0.91663 0.88915 0.92800 0.90746 0.84004 0.83769 0.84551 0.86346 0.87233 0.85093 0.90620 0.94641 0.97806 0.97646 0.94762 0.93185 0.95075 0.93095 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 9.22 71.24 0.66 -1.38 16 2 C -0.08 -1.92 5.88 -19.86 -0.12 -2.04 16 3 C -0.13 -2.67 9.70 22.27 0.22 -2.46 16 4 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 5 C -0.14 -3.05 10.05 22.27 0.22 -2.83 16 6 C -0.13 -3.23 9.68 22.27 0.22 -3.01 16 7 C -0.08 -2.16 4.37 -19.87 -0.09 -2.25 16 8 C -0.09 -2.14 4.18 29.10 0.12 -2.02 16 9 C 0.53 16.81 7.05 87.66 0.62 17.43 16 10 O -0.58 -23.32 16.34 -3.02 -0.05 -23.37 16 11 N -0.61 -19.17 3.31 -817.10 -2.71 -21.88 16 12 C 0.13 4.32 6.23 86.59 0.54 4.86 16 13 C -0.11 -3.86 4.01 -9.48 -0.04 -3.90 16 14 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 15 C 0.20 9.59 4.77 86.49 0.41 10.00 16 16 N -0.62 -30.39 3.39 -696.51 -2.36 -32.75 16 17 C -0.24 -12.77 10.25 84.03 0.86 -11.91 16 18 H 0.09 4.44 7.83 -2.91 -0.02 4.41 16 19 C -0.07 -3.91 5.48 84.86 0.47 -3.45 16 20 N -0.95 -57.97 10.25 21.65 0.22 -57.75 16 21 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 C 0.14 4.91 6.41 86.65 0.56 5.47 16 26 C -0.09 -2.55 4.14 -9.27 -0.04 -2.59 16 27 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 28 C 0.11 3.01 5.88 86.71 0.51 3.52 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.10 6.16 -2.39 -0.01 1.08 16 31 H 0.07 1.20 8.08 -2.38 -0.02 1.18 16 32 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.11 2.39 8.05 -2.39 -0.02 2.37 16 37 H 0.13 2.23 6.73 -2.39 -0.02 2.21 16 38 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.04 1.47 7.44 -2.39 -0.02 1.45 16 40 H 0.00 0.20 7.40 -2.38 -0.02 0.19 16 41 H 0.01 0.30 6.58 -2.39 -0.02 0.29 16 42 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.05 1.66 7.97 -2.39 -0.02 1.64 16 44 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 1.67 7.76 -2.39 -0.02 1.66 16 46 H 0.11 2.01 7.61 -2.39 -0.02 1.99 16 Total: -1.00 -75.17 364.37 3.43 -71.74 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.96 Total: 15.04 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.34 Total: 1.24 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.85 Total: -112.37 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -75.17 3.43 -71.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049206477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.190 kcal (2) G-P(sol) polarization free energy of solvation -75.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds