Wall clock time and date at job start Fri Apr 10 2020 23:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37980 * 120.07219 * 2 1 4 4 C 1.38336 * 120.14273 * 179.97438 * 3 2 1 5 5 C 1.38382 * 120.29715 * 0.02946 * 4 3 2 6 6 C 1.37936 * 120.13974 * 359.73922 * 5 4 3 7 7 C 1.39562 * 120.07692 * 179.97438 * 2 1 3 8 8 C 1.47844 * 120.14001 * 359.97438 * 7 2 1 9 9 O 1.21550 * 120.00139 * 54.63128 * 8 7 2 10 10 N 1.34776 * 119.99704 * 234.62635 * 8 7 2 11 11 C 1.45734 * 117.76605 * 355.94226 * 10 8 7 12 12 C 1.50860 * 109.67370 * 141.55649 * 11 10 8 13 13 C 1.52945 * 109.64013 * 53.16813 * 12 11 10 14 14 C 1.52929 * 109.73789 * 294.81441 * 13 12 11 15 15 H 1.08998 * 110.50836 * 292.93117 * 14 13 12 16 16 C 1.44197 * 117.76041 * 175.92029 * 10 8 7 17 17 H 1.09000 * 108.70322 * 333.00336 * 16 10 8 18 18 C 1.56494 * 112.77353 * 94.31364 * 16 10 8 19 19 C 1.54055 * 103.96708 * 152.97345 * 18 16 10 20 20 N 1.46883 * 107.70592 * 342.84129 * 19 18 16 21 21 C 1.36937 * 125.58249 * 177.00356 * 20 19 18 22 22 H 1.07995 * 120.00385 * 180.02562 * 21 20 19 23 23 C 1.38817 * 119.99903 * 0.02562 * 21 20 19 24 24 N 1.31618 * 120.00058 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99933 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46968 * 90.00083 * 25 23 21 27 27 H 1.48501 * 109.47502 * 209.99986 * 25 23 21 28 28 H 1.48499 * 109.47394 * 330.00437 * 25 23 21 29 29 H 1.09004 * 109.47412 * 274.27414 * 1 2 3 30 30 H 1.08994 * 109.47181 * 34.27989 * 1 2 3 31 31 H 1.09007 * 109.47040 * 154.27868 * 1 2 3 32 32 H 1.07992 * 119.92534 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.84921 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.92629 * 179.97438 * 5 4 3 35 35 H 1.08005 * 120.07022 * 180.28017 * 6 5 4 36 36 H 1.08996 * 109.45699 * 261.13248 * 11 10 8 37 37 H 1.09003 * 109.45091 * 21.08986 * 11 10 8 38 38 H 1.08998 * 108.38311 * 293.53109 * 12 11 10 39 39 H 1.09006 * 109.74541 * 173.63619 * 12 11 10 40 40 H 1.08997 * 109.42191 * 174.74590 * 13 12 11 41 41 H 1.09002 * 109.41728 * 54.87553 * 13 12 11 42 42 H 1.08995 * 110.49075 * 34.32479 * 18 16 10 43 43 H 1.09002 * 110.56659 * 271.66307 * 18 16 10 44 44 H 1.09001 * 109.81376 * 223.29077 * 19 18 16 45 45 H 1.09004 * 109.86781 * 102.41986 * 19 18 16 46 46 H 0.97004 * 120.00111 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5817 1.1958 0.0005 5 6 4.2813 0.0018 0.0005 6 6 3.6022 -1.1988 0.0053 7 6 2.2064 -1.2077 0.0005 8 6 1.4720 -2.4909 0.0017 9 8 0.6410 -2.7163 -0.8562 10 7 1.7242 -3.4107 0.9540 11 6 2.7924 -3.1287 1.9043 12 6 2.3899 -3.6068 3.2774 13 6 1.9667 -5.0748 3.2071 14 6 0.7032 -5.2079 2.3559 15 1 -0.1430 -4.7321 2.8515 16 6 0.9181 -4.6063 0.9631 17 1 -0.0504 -4.3783 0.5180 18 6 1.5800 -5.7890 0.1807 19 6 1.0024 -7.0490 0.8530 20 7 0.4418 -6.6464 2.1496 21 6 -0.2159 -7.4701 3.0237 22 1 -0.5932 -7.0771 3.9562 23 6 -0.3978 -8.8103 2.7111 24 7 0.0624 -9.2895 1.5749 25 14 -1.2945 -9.9342 3.9038 26 1 -2.7476 -9.9220 3.5981 27 1 -0.7718 -11.3176 3.7687 28 1 -1.0770 -9.4563 5.2929 29 1 -0.3634 0.0766 1.0248 30 1 -0.3633 0.8491 -0.5788 31 1 -0.3633 -0.9259 -0.4460 32 1 1.6584 2.1293 -0.0004 33 1 4.1181 2.1332 0.0001 34 1 5.3613 0.0101 0.0005 35 1 4.1494 -2.1300 0.0098 36 1 3.6985 -3.6511 1.5976 37 1 2.9826 -2.0557 1.9288 38 1 1.5518 -3.0001 3.6206 39 1 3.2288 -3.5000 3.9651 40 1 1.7663 -5.4428 4.2133 41 1 2.7686 -5.6620 2.7595 42 1 2.6641 -5.7595 0.2899 43 1 1.3013 -5.7550 -0.8726 44 1 1.7941 -7.7828 1.0047 45 1 0.2180 -7.4759 0.2280 46 1 -0.0651 -10.2259 1.3564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049300709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:17 Heat of formation + Delta-G solvation = 21.396395 kcal Electronic energy + Delta-G solvation = -27108.352776 eV Core-core repulsion = 23577.391014 eV Total energy + Delta-G solvation = -3530.961762 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.88480 -39.09047 -37.61061 -35.49042 -32.93956 -32.54591 -32.43280 -31.20646 -28.95371 -28.37826 -27.17529 -25.01440 -24.36418 -23.26208 -22.25157 -21.60680 -20.37445 -19.86339 -18.24389 -17.41577 -16.89811 -16.33577 -15.80779 -15.76869 -14.79227 -14.64488 -14.49959 -14.24000 -13.89411 -13.78418 -13.69403 -13.36702 -13.31467 -12.93598 -12.60989 -12.31958 -12.14402 -11.95918 -11.93991 -11.67021 -11.37952 -11.26087 -11.06455 -10.90207 -10.74945 -10.65152 -10.47136 -10.09402 -10.04854 -9.65587 -9.60280 -9.56332 -9.02408 -8.86660 -8.59612 -8.29900 -6.86064 -5.70929 -3.05699 0.87553 1.14823 2.74466 3.13672 3.40377 3.45268 3.47113 3.56504 4.43234 4.48424 4.63703 4.66801 4.79247 4.98208 5.09385 5.12327 5.25816 5.30145 5.38441 5.46600 5.50818 5.53844 5.57872 5.61073 5.66688 5.72513 5.74527 5.88777 6.01755 6.08265 6.11203 6.12982 6.22639 6.24155 6.30173 6.36524 6.39082 6.58827 6.58966 6.70678 6.75548 6.98850 7.08597 7.52561 7.57445 7.65389 7.83963 8.24509 8.31428 9.21259 9.81056 10.46167 11.39885 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027779 B = 0.003394 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.731527 B = 8248.916925 C = 8415.583036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.037 4.037 3 C -0.127 4.127 4 C -0.101 4.101 5 C -0.132 4.132 6 C -0.086 4.086 7 C -0.122 4.122 8 C 0.551 3.449 9 O -0.531 6.531 10 N -0.577 5.577 11 C 0.105 3.895 12 C -0.133 4.133 13 C -0.129 4.129 14 C 0.162 3.838 15 H 0.053 0.947 16 C 0.134 3.866 17 H 0.092 0.908 18 C -0.148 4.148 19 C 0.179 3.821 20 N -0.595 5.595 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.006 4.006 24 N -0.920 5.920 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.053 0.947 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.784 20.464 -0.939 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.038 4.038 3 C -0.145 4.145 4 C -0.119 4.119 5 C -0.150 4.150 6 C -0.104 4.104 7 C -0.125 4.125 8 C 0.339 3.661 9 O -0.408 6.408 10 N -0.308 5.308 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.170 4.170 14 C 0.053 3.947 15 H 0.071 0.929 16 C 0.030 3.970 17 H 0.110 0.890 18 C -0.187 4.187 19 C 0.054 3.946 20 N -0.319 5.319 21 C -0.356 4.356 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.259 20.018 -1.355 21.697 hybrid contribution -0.208 -0.685 0.634 0.956 sum 8.051 19.333 -0.720 20.955 Atomic orbital electron populations 1.21077 0.90607 1.04886 1.02647 1.19917 0.96501 0.91519 0.95813 1.20993 0.94286 0.97336 1.01895 1.21277 0.94208 0.98204 0.98245 1.21061 1.00076 0.92118 1.01744 1.21328 0.92679 0.98874 0.97555 1.19831 0.93997 0.93344 1.05309 1.18487 0.82498 0.83376 0.81773 1.90754 1.34451 1.78958 1.36685 1.47024 1.35058 1.18905 1.29802 1.21301 0.89707 1.01006 0.89719 1.21467 1.01466 0.98627 0.95628 1.22108 0.99898 0.93383 1.01571 1.20850 0.95005 0.87143 0.91699 0.92933 1.21534 0.94274 0.83244 0.97988 0.89029 1.23386 0.99401 0.96559 0.99390 1.21059 0.97001 0.90540 0.85973 1.44487 1.65899 1.02435 1.19091 1.19011 1.28573 0.89640 0.98338 0.90411 1.24805 1.01018 0.96946 0.97512 1.69973 1.50247 1.13776 1.22698 0.86119 0.79339 0.80201 0.80073 1.21588 1.21708 1.20712 0.91007 0.91218 0.89090 0.85569 0.85796 0.85538 0.85316 0.92072 0.89736 0.91904 0.91026 0.91767 0.91953 0.92704 0.91921 0.94145 0.92929 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.68 36.00 0.35 -1.21 16 2 C -0.04 -0.43 5.91 -104.23 -0.62 -1.05 16 3 C -0.13 -1.19 9.71 -39.64 -0.38 -1.57 16 4 C -0.10 -0.83 10.04 -39.49 -0.40 -1.23 16 5 C -0.13 -1.14 10.03 -39.64 -0.40 -1.54 16 6 C -0.09 -0.92 7.57 -39.19 -0.30 -1.21 16 7 C -0.12 -1.59 4.61 -104.97 -0.48 -2.07 16 8 C 0.55 8.92 6.45 -12.33 -0.08 8.84 16 9 O -0.53 -10.36 14.40 5.32 0.08 -10.28 16 10 N -0.58 -9.13 2.86 -168.46 -0.48 -9.61 16 11 C 0.11 1.33 4.95 -5.53 -0.03 1.31 16 12 C -0.13 -1.76 5.94 -27.83 -0.17 -1.92 16 13 C -0.13 -2.26 5.35 -26.80 -0.14 -2.40 16 14 C 0.16 3.30 3.23 -67.21 -0.22 3.08 16 15 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 16 C 0.13 2.56 2.83 -67.15 -0.19 2.37 16 17 H 0.09 1.93 7.11 -51.93 -0.37 1.57 16 18 C -0.15 -2.98 6.57 -24.30 -0.16 -3.14 16 19 C 0.18 4.41 5.40 -3.28 -0.02 4.39 16 20 N -0.59 -14.93 2.94 -163.75 -0.48 -15.41 16 21 C -0.23 -6.23 10.27 -15.06 -0.15 -6.39 16 22 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 23 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 24 N -0.92 -26.95 10.29 55.49 0.57 -26.38 16 25 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 31 H 0.09 1.31 5.57 -51.93 -0.29 1.02 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.13 1.26 7.16 -52.48 -0.38 0.89 16 36 H 0.06 0.73 7.91 -51.93 -0.41 0.32 16 37 H 0.08 0.93 5.20 -51.93 -0.27 0.66 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.06 1.16 8.02 -51.93 -0.42 0.75 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 45 H 0.05 1.45 7.25 -51.93 -0.38 1.07 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -31.51 356.63 -10.54 -42.05 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.10 Total: 1.30 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -3.48 Total: -4.03 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.39 Total: -51.41 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.51 -10.54 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049300709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.443 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds