Wall clock time and date at job start Fri Apr 10 2020 23:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37980 * 120.07219 * 2 1 4 4 C 1.38336 * 120.14273 * 179.97438 * 3 2 1 5 5 C 1.38382 * 120.29715 * 0.02946 * 4 3 2 6 6 C 1.37936 * 120.13974 * 359.73922 * 5 4 3 7 7 C 1.39562 * 120.07692 * 179.97438 * 2 1 3 8 8 C 1.47844 * 120.14001 * 359.97438 * 7 2 1 9 9 O 1.21550 * 120.00139 * 54.63128 * 8 7 2 10 10 N 1.34776 * 119.99704 * 234.62635 * 8 7 2 11 11 C 1.45734 * 117.76605 * 355.94226 * 10 8 7 12 12 C 1.50860 * 109.67370 * 141.55649 * 11 10 8 13 13 C 1.52945 * 109.64013 * 53.16813 * 12 11 10 14 14 C 1.52929 * 109.73789 * 294.81441 * 13 12 11 15 15 H 1.08998 * 110.50836 * 292.93117 * 14 13 12 16 16 C 1.44197 * 117.76041 * 175.92029 * 10 8 7 17 17 H 1.09000 * 108.70322 * 333.00336 * 16 10 8 18 18 C 1.56494 * 112.77353 * 94.31364 * 16 10 8 19 19 C 1.54055 * 103.96708 * 152.97345 * 18 16 10 20 20 N 1.46883 * 107.70592 * 342.84129 * 19 18 16 21 21 C 1.36937 * 125.58249 * 177.00356 * 20 19 18 22 22 H 1.07995 * 120.00385 * 180.02562 * 21 20 19 23 23 C 1.38817 * 119.99903 * 0.02562 * 21 20 19 24 24 N 1.31618 * 120.00058 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99933 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46968 * 90.00083 * 25 23 21 27 27 H 1.48501 * 109.47502 * 209.99986 * 25 23 21 28 28 H 1.48499 * 109.47394 * 330.00437 * 25 23 21 29 29 H 1.09004 * 109.47412 * 274.27414 * 1 2 3 30 30 H 1.08994 * 109.47181 * 34.27989 * 1 2 3 31 31 H 1.09007 * 109.47040 * 154.27868 * 1 2 3 32 32 H 1.07992 * 119.92534 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.84921 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.92629 * 179.97438 * 5 4 3 35 35 H 1.08005 * 120.07022 * 180.28017 * 6 5 4 36 36 H 1.08996 * 109.45699 * 261.13248 * 11 10 8 37 37 H 1.09003 * 109.45091 * 21.08986 * 11 10 8 38 38 H 1.08998 * 108.38311 * 293.53109 * 12 11 10 39 39 H 1.09006 * 109.74541 * 173.63619 * 12 11 10 40 40 H 1.08997 * 109.42191 * 174.74590 * 13 12 11 41 41 H 1.09002 * 109.41728 * 54.87553 * 13 12 11 42 42 H 1.08995 * 110.49075 * 34.32479 * 18 16 10 43 43 H 1.09002 * 110.56659 * 271.66307 * 18 16 10 44 44 H 1.09001 * 109.81376 * 223.29077 * 19 18 16 45 45 H 1.09004 * 109.86781 * 102.41986 * 19 18 16 46 46 H 0.97004 * 120.00111 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5817 1.1958 0.0005 5 6 4.2813 0.0018 0.0005 6 6 3.6022 -1.1988 0.0053 7 6 2.2064 -1.2077 0.0005 8 6 1.4720 -2.4909 0.0017 9 8 0.6410 -2.7163 -0.8562 10 7 1.7242 -3.4107 0.9540 11 6 2.7924 -3.1287 1.9043 12 6 2.3899 -3.6068 3.2774 13 6 1.9667 -5.0748 3.2071 14 6 0.7032 -5.2079 2.3559 15 1 -0.1430 -4.7321 2.8515 16 6 0.9181 -4.6063 0.9631 17 1 -0.0504 -4.3783 0.5180 18 6 1.5800 -5.7890 0.1807 19 6 1.0024 -7.0490 0.8530 20 7 0.4418 -6.6464 2.1496 21 6 -0.2159 -7.4701 3.0237 22 1 -0.5932 -7.0771 3.9562 23 6 -0.3978 -8.8103 2.7111 24 7 0.0624 -9.2895 1.5749 25 14 -1.2945 -9.9342 3.9038 26 1 -2.7476 -9.9220 3.5981 27 1 -0.7718 -11.3176 3.7687 28 1 -1.0770 -9.4563 5.2929 29 1 -0.3634 0.0766 1.0248 30 1 -0.3633 0.8491 -0.5788 31 1 -0.3633 -0.9259 -0.4460 32 1 1.6584 2.1293 -0.0004 33 1 4.1181 2.1332 0.0001 34 1 5.3613 0.0101 0.0005 35 1 4.1494 -2.1300 0.0098 36 1 3.6985 -3.6511 1.5976 37 1 2.9826 -2.0557 1.9288 38 1 1.5518 -3.0001 3.6206 39 1 3.2288 -3.5000 3.9651 40 1 1.7663 -5.4428 4.2133 41 1 2.7686 -5.6620 2.7595 42 1 2.6641 -5.7595 0.2899 43 1 1.3013 -5.7550 -0.8726 44 1 1.7941 -7.7828 1.0047 45 1 0.2180 -7.4759 0.2280 46 1 -0.0651 -10.2259 1.3564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049300709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:16 Heat of formation + Delta-G solvation = 3.967552 kcal Electronic energy + Delta-G solvation = -27109.108547 eV Core-core repulsion = 23577.391014 eV Total energy + Delta-G solvation = -3531.717533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.09148 -40.22314 -38.91510 -37.02842 -34.30384 -34.00021 -33.61438 -32.27546 -30.74523 -29.94942 -28.04233 -26.52681 -26.05729 -24.30447 -23.50233 -22.62082 -22.02579 -21.23292 -19.60494 -18.88164 -18.51792 -17.44249 -16.83823 -16.80066 -16.68397 -16.06249 -15.78901 -15.55072 -15.09810 -15.03741 -14.83642 -14.60510 -14.30392 -14.20518 -13.99427 -13.83648 -13.60142 -13.15646 -13.10424 -12.93841 -12.81244 -12.66868 -12.53277 -12.37712 -12.25371 -12.05101 -11.97772 -11.90934 -11.62170 -11.57932 -11.25234 -10.84645 -10.71650 -9.81463 -9.68135 -9.60411 -8.93121 -7.85222 -5.22326 0.06919 0.43398 1.45158 1.47628 1.55812 1.57455 1.90974 2.48933 2.79424 3.31509 3.38110 3.55600 3.76770 3.85813 3.90547 3.94445 3.98510 4.06147 4.13794 4.21245 4.30598 4.42452 4.53128 4.55168 4.56236 4.62495 4.70589 4.72746 4.78575 4.80525 4.83308 4.92643 5.01200 5.04040 5.15968 5.25573 5.31215 5.40027 5.43180 5.52587 5.55899 5.58852 5.60380 5.63585 5.70899 6.01823 6.17004 6.31122 7.05349 7.07924 7.73951 8.38549 9.24785 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027779 B = 0.003394 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.731527 B = 8248.916925 C = 8415.583036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.055 4.055 3 C -0.126 4.126 4 C -0.091 4.091 5 C -0.126 4.126 6 C -0.091 4.091 7 C -0.147 4.147 8 C 0.550 3.450 9 O -0.576 6.576 10 N -0.578 5.578 11 C 0.103 3.897 12 C -0.122 4.122 13 C -0.119 4.119 14 C 0.157 3.843 15 H 0.046 0.954 16 C 0.152 3.848 17 H 0.062 0.938 18 C -0.133 4.133 19 C 0.193 3.807 20 N -0.615 5.615 21 C -0.237 4.237 22 H 0.085 0.915 23 C -0.066 4.066 24 N -0.952 5.952 25 Si 0.980 3.020 26 H -0.289 1.289 27 H -0.295 1.295 28 H -0.266 1.266 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.135 0.865 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.011 0.989 45 H 0.011 0.989 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.238 23.965 0.500 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.055 4.055 3 C -0.144 4.144 4 C -0.109 4.109 5 C -0.143 4.143 6 C -0.109 4.109 7 C -0.150 4.150 8 C 0.340 3.660 9 O -0.456 6.456 10 N -0.307 5.307 11 C -0.018 4.018 12 C -0.161 4.161 13 C -0.159 4.159 14 C 0.050 3.950 15 H 0.064 0.936 16 C 0.046 3.954 17 H 0.080 0.920 18 C -0.173 4.173 19 C 0.068 3.932 20 N -0.339 5.339 21 C -0.365 4.365 22 H 0.102 0.898 23 C -0.259 4.259 24 N -0.601 5.601 25 Si 0.808 3.192 26 H -0.216 1.216 27 H -0.221 1.221 28 H -0.190 1.190 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.167 0.833 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.153 0.847 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.743 23.578 0.120 25.910 hybrid contribution -0.965 -1.656 0.155 1.923 sum 9.778 21.922 0.275 24.006 Atomic orbital electron populations 1.21020 0.91301 1.03736 1.02960 1.20052 0.96378 0.92205 0.96912 1.21279 0.95132 0.97090 1.00924 1.21731 0.93791 0.99571 0.95798 1.21435 1.01614 0.91267 1.00021 1.21461 0.91488 1.00325 0.97630 1.19654 0.94981 0.91639 1.08704 1.19115 0.81862 0.84301 0.80738 1.90727 1.36543 1.79914 1.38458 1.47045 1.35394 1.17561 1.30718 1.21587 0.88896 1.02914 0.88427 1.21427 1.02909 0.94889 0.96850 1.21890 0.97485 0.96668 0.99821 1.21041 0.96410 0.84577 0.92952 0.93598 1.21027 0.93655 0.84223 0.96474 0.91959 1.23179 1.00259 0.94999 0.98830 1.20701 0.94817 0.91845 0.85862 1.44735 1.65910 1.04394 1.18901 1.19402 1.28103 0.90234 0.98801 0.89751 1.25669 1.02372 0.98538 0.99301 1.70199 1.51803 1.13544 1.24547 0.85057 0.77721 0.77747 0.78663 1.21563 1.22126 1.19024 0.90483 0.89326 0.92717 0.83263 0.82392 0.82497 0.84669 0.90529 0.87070 0.91614 0.87426 0.92696 0.93121 0.90758 0.92176 0.97037 0.97046 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.68 71.23 0.69 -2.34 16 2 C -0.05 -1.19 5.91 -19.61 -0.12 -1.31 16 3 C -0.13 -1.88 9.71 22.23 0.22 -1.66 16 4 C -0.09 -1.03 10.04 22.33 0.22 -0.80 16 5 C -0.13 -1.56 10.03 22.23 0.22 -1.34 16 6 C -0.09 -1.64 7.57 22.52 0.17 -1.47 16 7 C -0.15 -3.61 4.61 -20.09 -0.09 -3.70 16 8 C 0.55 17.91 6.45 86.79 0.56 18.47 16 9 O -0.58 -23.63 14.40 -3.87 -0.06 -23.69 16 10 N -0.58 -18.03 2.86 -805.15 -2.30 -20.33 16 11 C 0.10 2.32 4.95 85.83 0.42 2.75 16 12 C -0.12 -2.87 5.94 29.88 0.18 -2.70 16 13 C -0.12 -4.05 5.35 30.55 0.16 -3.89 16 14 C 0.16 6.58 3.23 44.83 0.14 6.72 16 15 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 16 C 0.15 6.00 2.83 46.72 0.13 6.14 16 17 H 0.06 2.82 7.11 -2.39 -0.02 2.80 16 18 C -0.13 -5.59 6.57 32.17 0.21 -5.38 16 19 C 0.19 10.12 5.40 86.66 0.47 10.59 16 20 N -0.61 -32.22 2.94 -671.97 -1.97 -34.19 16 21 C -0.24 -13.37 10.27 84.03 0.86 -12.51 16 22 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 23 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 24 N -0.95 -58.54 10.29 21.65 0.22 -58.32 16 25 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.09 1.57 8.11 -2.39 -0.02 1.55 16 31 H 0.05 1.65 5.57 -2.38 -0.01 1.64 16 32 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 34 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 35 H 0.14 2.20 7.16 -2.91 -0.02 2.18 16 36 H 0.08 1.55 7.91 -2.39 -0.02 1.53 16 37 H 0.11 2.02 5.20 -2.39 -0.01 2.01 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.11 1.86 8.14 -2.38 -0.02 1.85 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 1.85 8.02 -2.39 -0.02 1.83 16 42 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.01 0.66 7.60 -2.39 -0.02 0.64 16 45 H 0.01 0.67 7.25 -2.38 -0.02 0.66 16 46 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -74.26 356.63 3.81 -70.45 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.96 Total: 13.43 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 4.92 Total: 4.23 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -4.05 Total: -112.84 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.06 Total: -23.69 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -74.26 3.81 -70.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049300709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.422 kcal (2) G-P(sol) polarization free energy of solvation -74.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds