Wall clock time and date at job start Fri Apr 10 2020 23:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37979 * 120.07382 * 2 1 4 4 C 1.38340 * 120.14237 * 180.24831 * 3 2 1 5 5 C 1.38382 * 120.29314 * 359.75237 * 4 3 2 6 6 C 1.37932 * 120.14721 * 359.97067 * 5 4 3 7 7 C 1.39560 * 120.07132 * 179.71934 * 2 1 3 8 8 C 1.47845 * 120.14354 * 0.03085 * 7 2 1 9 9 O 1.21545 * 119.99709 * 305.46089 * 8 7 2 10 10 N 1.34783 * 119.99966 * 125.47094 * 8 7 2 11 11 C 1.46798 * 119.57468 * 354.30918 * 10 8 7 12 12 C 1.53467 * 107.59579 * 232.06533 * 11 10 8 13 13 C 1.52738 * 108.43338 * 301.92223 * 12 11 10 14 14 C 1.53011 * 110.80152 * 63.77867 * 13 12 11 15 15 H 1.08999 * 111.38183 * 69.70972 * 14 13 12 16 16 C 1.45121 * 119.57331 * 174.33085 * 10 8 7 17 17 H 1.09001 * 109.96652 * 11.92187 * 16 10 8 18 18 C 1.54414 * 111.60868 * 248.64259 * 16 10 8 19 19 C 1.54575 * 102.44555 * 203.41996 * 18 16 10 20 20 N 1.47117 * 107.25411 * 21.67201 * 19 18 16 21 21 C 1.36929 * 125.76740 * 182.86392 * 20 19 18 22 22 H 1.08007 * 120.00359 * 179.69541 * 21 20 19 23 23 C 1.38814 * 120.00037 * 359.68590 * 21 20 19 24 24 N 1.31617 * 119.99920 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99837 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46977 * 60.00233 * 25 23 21 27 27 H 1.48500 * 109.46795 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47056 * 300.00031 * 25 23 21 29 29 H 1.08997 * 109.47262 * 275.17203 * 1 2 3 30 30 H 1.09000 * 109.47142 * 35.16886 * 1 2 3 31 31 H 1.09000 * 109.47472 * 155.17307 * 1 2 3 32 32 H 1.08001 * 119.92980 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.85405 * 179.76406 * 4 3 2 34 34 H 1.07996 * 119.92519 * 179.97438 * 5 4 3 35 35 H 1.07995 * 120.07570 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.83571 * 112.53660 * 11 10 8 37 37 H 1.08997 * 109.88772 * 351.61054 * 11 10 8 38 38 H 1.08998 * 109.63970 * 182.24281 * 12 11 10 39 39 H 1.08993 * 109.81901 * 61.70652 * 12 11 10 40 40 H 1.09005 * 109.21493 * 303.43489 * 13 12 11 41 41 H 1.09011 * 109.17155 * 184.09534 * 13 12 11 42 42 H 1.09001 * 110.81276 * 321.65356 * 18 16 10 43 43 H 1.08997 * 110.82028 * 85.17847 * 18 16 10 44 44 H 1.09003 * 109.88058 * 262.26221 * 19 18 16 45 45 H 1.09001 * 109.88774 * 141.08774 * 19 18 16 46 46 H 0.97005 * 119.99595 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 -0.0052 5 6 4.2813 0.0017 -0.0052 6 6 3.6023 -1.1989 0.0005 7 6 2.2063 -1.2077 0.0059 8 6 1.4719 -2.4909 0.0115 9 8 0.6396 -2.7109 0.8695 10 7 1.7254 -3.4166 -0.9347 11 6 2.6390 -3.0940 -2.0376 12 6 1.9153 -3.4223 -3.3505 13 6 1.5228 -4.8982 -3.3296 14 6 0.5210 -5.1782 -2.2075 15 1 -0.4491 -4.7288 -2.4195 16 6 1.0914 -4.7193 -0.8504 17 1 0.3004 -4.7004 -0.1006 18 6 2.1158 -5.8310 -0.5357 19 6 1.4130 -7.0954 -1.0803 20 7 0.4199 -6.6505 -2.0703 21 6 -0.4542 -7.4592 -2.7462 22 1 -1.1504 -7.0311 -3.4523 23 6 -0.4455 -8.8295 -2.5241 24 7 0.4026 -9.3512 -1.6634 25 14 -1.6375 -9.9328 -3.4467 26 1 -1.4014 -9.8046 -4.9073 27 1 -1.4278 -11.3435 -3.0328 28 1 -3.0312 -9.5274 -3.1331 29 1 -0.3633 0.0926 1.0234 30 1 -0.3633 0.8401 -0.5919 31 1 -0.3634 -0.9327 -0.4315 32 1 1.6585 2.1294 0.0004 33 1 4.1183 2.1330 -0.0090 34 1 5.3612 0.0099 -0.0097 35 1 4.1493 -2.1301 0.0009 36 1 3.5452 -3.6939 -1.9547 37 1 2.8932 -2.0344 -2.0106 38 1 2.5804 -3.2320 -4.1929 39 1 1.0208 -2.8066 -3.4434 40 1 2.4151 -5.5046 -3.1734 41 1 1.0726 -5.1625 -4.2866 42 1 3.0542 -5.6529 -1.0610 43 1 2.2816 -5.9123 0.5385 44 1 0.9149 -7.6222 -0.2663 45 1 2.1435 -7.7498 -1.5561 46 1 0.4084 -10.3087 -1.5079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049300710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:19 Heat of formation + Delta-G solvation = 20.605286 kcal Electronic energy + Delta-G solvation = -27120.854739 eV Core-core repulsion = 23589.858672 eV Total energy + Delta-G solvation = -3530.996067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.76127 -39.12647 -37.62246 -35.27871 -32.92984 -32.44733 -32.32941 -31.17886 -28.97733 -28.19120 -27.17336 -25.06254 -24.27918 -23.26803 -22.18428 -21.65632 -20.25753 -19.90362 -18.25511 -17.38754 -16.87749 -16.35522 -15.77450 -15.69775 -14.75258 -14.60825 -14.58329 -14.16228 -13.85889 -13.70448 -13.61071 -13.33399 -13.31313 -12.88868 -12.56251 -12.28769 -12.18678 -12.03155 -11.90973 -11.64394 -11.36061 -11.26236 -11.01316 -10.96078 -10.77761 -10.62584 -10.49828 -10.10739 -10.07972 -9.64561 -9.61212 -9.56568 -9.03997 -8.87279 -8.61344 -8.26506 -6.85602 -5.70357 -3.04478 0.88524 1.15277 2.77684 3.14685 3.41520 3.45891 3.46936 3.58005 4.45320 4.49709 4.64312 4.67238 4.80423 4.99975 5.08764 5.17194 5.24830 5.31286 5.38967 5.46810 5.50694 5.57168 5.59396 5.61377 5.65235 5.71455 5.76342 5.86922 6.01445 6.05573 6.12030 6.14405 6.22233 6.23192 6.31789 6.33530 6.38135 6.50458 6.60799 6.70667 6.75389 6.98669 7.06930 7.54895 7.58818 7.63255 7.82616 8.23625 8.32843 9.21195 9.80883 10.46932 11.40823 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027672 B = 0.003396 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.616551 B = 8243.916559 C = 8344.656283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.039 4.039 3 C -0.127 4.127 4 C -0.102 4.102 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.120 4.120 8 C 0.555 3.445 9 O -0.534 6.534 10 N -0.585 5.585 11 C 0.105 3.895 12 C -0.132 4.132 13 C -0.130 4.130 14 C 0.156 3.844 15 H 0.059 0.941 16 C 0.130 3.870 17 H 0.102 0.898 18 C -0.152 4.152 19 C 0.181 3.819 20 N -0.598 5.598 21 C -0.227 4.227 22 H 0.077 0.923 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.042 0.958 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 20.638 0.737 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.040 4.040 3 C -0.145 4.145 4 C -0.120 4.120 5 C -0.149 4.149 6 C -0.103 4.103 7 C -0.123 4.123 8 C 0.343 3.657 9 O -0.411 6.411 10 N -0.316 5.316 11 C -0.018 4.018 12 C -0.171 4.171 13 C -0.170 4.170 14 C 0.048 3.952 15 H 0.077 0.923 16 C 0.026 3.974 17 H 0.120 0.880 18 C -0.191 4.191 19 C 0.056 3.944 20 N -0.323 5.323 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.203 4.203 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.928 20.197 1.179 21.729 hybrid contribution -0.380 -0.711 -0.542 0.971 sum 7.548 19.486 0.637 20.907 Atomic orbital electron populations 1.20860 0.90475 1.03070 1.03049 1.19943 0.96460 0.91613 0.95981 1.20981 0.94286 0.97315 1.01893 1.21272 0.94200 0.98196 0.98316 1.21061 1.00067 0.92130 1.01691 1.21285 0.92636 0.98817 0.97591 1.19879 0.94004 0.93303 1.05150 1.18399 0.82254 0.83380 0.81696 1.90783 1.33532 1.79156 1.37635 1.47583 1.45645 1.13789 1.24626 1.21933 0.92588 1.00920 0.86347 1.21921 1.00297 0.98796 0.96107 1.22125 1.00757 0.93358 1.00733 1.21344 0.95889 0.86699 0.91281 0.92264 1.21807 0.95848 0.79991 0.99773 0.87953 1.23123 0.98136 0.97460 1.00365 1.21171 0.90773 0.90236 0.92199 1.44707 1.40764 0.99430 1.47355 1.18988 1.11185 0.87997 1.17376 0.90501 1.24791 0.99366 0.96641 0.99499 1.69946 1.38361 1.11192 1.37368 0.86203 0.80583 0.79834 0.79149 1.21216 1.21632 1.21169 0.90329 0.91457 0.91056 0.85565 0.85801 0.85562 0.85395 0.91312 0.89833 0.91342 0.91865 0.91838 0.92143 0.92239 0.92049 0.93045 0.94027 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.27 36.00 0.33 -1.02 16 2 C -0.04 -0.46 5.91 -104.23 -0.62 -1.08 16 3 C -0.13 -1.18 9.71 -39.64 -0.38 -1.56 16 4 C -0.10 -0.84 10.04 -39.49 -0.40 -1.23 16 5 C -0.13 -1.14 10.03 -39.64 -0.40 -1.54 16 6 C -0.08 -0.91 7.78 -39.18 -0.30 -1.22 16 7 C -0.12 -1.57 4.53 -104.96 -0.48 -2.05 16 8 C 0.56 9.02 6.03 -12.33 -0.07 8.95 16 9 O -0.53 -10.55 15.31 5.33 0.08 -10.47 16 10 N -0.59 -9.21 2.73 -166.13 -0.45 -9.66 16 11 C 0.10 1.33 5.23 -3.64 -0.02 1.31 16 12 C -0.13 -1.76 6.11 -26.62 -0.16 -1.92 16 13 C -0.13 -2.26 5.10 -26.86 -0.14 -2.40 16 14 C 0.16 3.20 3.59 -66.35 -0.24 2.96 16 15 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 16 C 0.13 2.47 3.12 -67.30 -0.21 2.26 16 17 H 0.10 2.21 6.93 -51.93 -0.36 1.85 16 18 C -0.15 -2.92 6.08 -25.16 -0.15 -3.08 16 19 C 0.18 4.39 5.19 -2.88 -0.01 4.37 16 20 N -0.60 -14.98 2.91 -162.19 -0.47 -15.45 16 21 C -0.23 -6.26 10.29 -15.06 -0.16 -6.41 16 22 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 23 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 24 N -0.92 -26.96 10.33 55.49 0.57 -26.38 16 25 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.07 0.97 6.58 -51.93 -0.34 0.63 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.13 1.27 7.75 -52.49 -0.41 0.87 16 36 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 37 H 0.08 0.92 5.37 -51.93 -0.28 0.64 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.18 7.12 -51.93 -0.37 0.81 16 41 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 42 H 0.06 1.05 6.81 -51.93 -0.35 0.70 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.05 1.40 7.30 -51.93 -0.38 1.02 16 45 H 0.04 1.10 7.60 -51.93 -0.39 0.70 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 355.92 15.07 5.36 5.36 Total: -1.00 -31.60 355.92 -10.48 -42.09 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.05 Total: 1.37 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.50 Total: -3.95 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.35 Total: -51.49 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.60 -10.48 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049300710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.691 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds