Wall clock time and date at job start Fri Apr 10 2020 23:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37979 * 120.07382 * 2 1 4 4 C 1.38340 * 120.14237 * 180.24831 * 3 2 1 5 5 C 1.38382 * 120.29314 * 359.75237 * 4 3 2 6 6 C 1.37932 * 120.14721 * 359.97067 * 5 4 3 7 7 C 1.39560 * 120.07132 * 179.71934 * 2 1 3 8 8 C 1.47845 * 120.14354 * 0.03085 * 7 2 1 9 9 O 1.21545 * 119.99709 * 305.46089 * 8 7 2 10 10 N 1.34783 * 119.99966 * 125.47094 * 8 7 2 11 11 C 1.46798 * 119.57468 * 354.30918 * 10 8 7 12 12 C 1.53467 * 107.59579 * 232.06533 * 11 10 8 13 13 C 1.52738 * 108.43338 * 301.92223 * 12 11 10 14 14 C 1.53011 * 110.80152 * 63.77867 * 13 12 11 15 15 H 1.08999 * 111.38183 * 69.70972 * 14 13 12 16 16 C 1.45121 * 119.57331 * 174.33085 * 10 8 7 17 17 H 1.09001 * 109.96652 * 11.92187 * 16 10 8 18 18 C 1.54414 * 111.60868 * 248.64259 * 16 10 8 19 19 C 1.54575 * 102.44555 * 203.41996 * 18 16 10 20 20 N 1.47117 * 107.25411 * 21.67201 * 19 18 16 21 21 C 1.36929 * 125.76740 * 182.86392 * 20 19 18 22 22 H 1.08007 * 120.00359 * 179.69541 * 21 20 19 23 23 C 1.38814 * 120.00037 * 359.68590 * 21 20 19 24 24 N 1.31617 * 119.99920 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99837 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46977 * 60.00233 * 25 23 21 27 27 H 1.48500 * 109.46795 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47056 * 300.00031 * 25 23 21 29 29 H 1.08997 * 109.47262 * 275.17203 * 1 2 3 30 30 H 1.09000 * 109.47142 * 35.16886 * 1 2 3 31 31 H 1.09000 * 109.47472 * 155.17307 * 1 2 3 32 32 H 1.08001 * 119.92980 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.85405 * 179.76406 * 4 3 2 34 34 H 1.07996 * 119.92519 * 179.97438 * 5 4 3 35 35 H 1.07995 * 120.07570 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.83571 * 112.53660 * 11 10 8 37 37 H 1.08997 * 109.88772 * 351.61054 * 11 10 8 38 38 H 1.08998 * 109.63970 * 182.24281 * 12 11 10 39 39 H 1.08993 * 109.81901 * 61.70652 * 12 11 10 40 40 H 1.09005 * 109.21493 * 303.43489 * 13 12 11 41 41 H 1.09011 * 109.17155 * 184.09534 * 13 12 11 42 42 H 1.09001 * 110.81276 * 321.65356 * 18 16 10 43 43 H 1.08997 * 110.82028 * 85.17847 * 18 16 10 44 44 H 1.09003 * 109.88058 * 262.26221 * 19 18 16 45 45 H 1.09001 * 109.88774 * 141.08774 * 19 18 16 46 46 H 0.97005 * 119.99595 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 -0.0052 5 6 4.2813 0.0017 -0.0052 6 6 3.6023 -1.1989 0.0005 7 6 2.2063 -1.2077 0.0059 8 6 1.4719 -2.4909 0.0115 9 8 0.6396 -2.7109 0.8695 10 7 1.7254 -3.4166 -0.9347 11 6 2.6390 -3.0940 -2.0376 12 6 1.9153 -3.4223 -3.3505 13 6 1.5228 -4.8982 -3.3296 14 6 0.5210 -5.1782 -2.2075 15 1 -0.4491 -4.7288 -2.4195 16 6 1.0914 -4.7193 -0.8504 17 1 0.3004 -4.7004 -0.1006 18 6 2.1158 -5.8310 -0.5357 19 6 1.4130 -7.0954 -1.0803 20 7 0.4199 -6.6505 -2.0703 21 6 -0.4542 -7.4592 -2.7462 22 1 -1.1504 -7.0311 -3.4523 23 6 -0.4455 -8.8295 -2.5241 24 7 0.4026 -9.3512 -1.6634 25 14 -1.6375 -9.9328 -3.4467 26 1 -1.4014 -9.8046 -4.9073 27 1 -1.4278 -11.3435 -3.0328 28 1 -3.0312 -9.5274 -3.1331 29 1 -0.3633 0.0926 1.0234 30 1 -0.3633 0.8401 -0.5919 31 1 -0.3634 -0.9327 -0.4315 32 1 1.6585 2.1294 0.0004 33 1 4.1183 2.1330 -0.0090 34 1 5.3612 0.0099 -0.0097 35 1 4.1493 -2.1301 0.0009 36 1 3.5452 -3.6939 -1.9547 37 1 2.8932 -2.0344 -2.0106 38 1 2.5804 -3.2320 -4.1929 39 1 1.0208 -2.8066 -3.4434 40 1 2.4151 -5.5046 -3.1734 41 1 1.0726 -5.1625 -4.2866 42 1 3.0542 -5.6529 -1.0610 43 1 2.2816 -5.9123 0.5385 44 1 0.9149 -7.6222 -0.2663 45 1 2.1435 -7.7498 -1.5561 46 1 0.4084 -10.3087 -1.5079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049300710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:18 Heat of formation + Delta-G solvation = 3.090593 kcal Electronic energy + Delta-G solvation = -27121.614233 eV Core-core repulsion = 23589.858672 eV Total energy + Delta-G solvation = -3531.755561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98331 -40.27695 -38.91258 -36.82808 -34.25002 -33.85389 -33.61471 -32.22313 -30.75198 -29.76125 -28.04209 -26.57720 -25.98218 -24.30282 -23.44569 -22.61872 -21.95857 -21.24734 -19.61871 -18.83985 -18.51149 -17.46466 -16.80811 -16.77079 -16.62898 -16.12963 -15.68226 -15.51158 -15.07240 -14.99585 -14.73344 -14.63133 -14.26532 -14.12149 -14.00942 -13.78774 -13.54632 -13.18432 -13.16159 -12.93360 -12.81520 -12.63972 -12.47074 -12.34327 -12.31195 -12.11401 -11.97711 -11.95084 -11.65831 -11.55225 -11.22567 -10.88175 -10.72047 -9.84311 -9.68063 -9.58753 -8.91406 -7.85245 -5.21361 0.07518 0.43602 1.44271 1.47905 1.53906 1.60055 1.91590 2.48948 2.80222 3.31576 3.40255 3.54468 3.82626 3.87729 3.91038 3.96201 4.01212 4.08694 4.11757 4.20818 4.33444 4.40631 4.53903 4.55092 4.55475 4.63393 4.69681 4.73610 4.76296 4.81012 4.82442 4.94079 5.02406 5.03896 5.15449 5.23157 5.32290 5.38161 5.43490 5.53171 5.54455 5.56982 5.61354 5.62453 5.71669 6.02061 6.16470 6.36634 7.06040 7.08312 7.73402 8.39142 9.24600 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027672 B = 0.003396 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.616551 B = 8243.916559 C = 8344.656283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.057 4.057 3 C -0.125 4.125 4 C -0.091 4.091 5 C -0.125 4.125 6 C -0.090 4.090 7 C -0.145 4.145 8 C 0.554 3.446 9 O -0.582 6.582 10 N -0.584 5.584 11 C 0.104 3.896 12 C -0.122 4.122 13 C -0.118 4.118 14 C 0.152 3.848 15 H 0.046 0.954 16 C 0.145 3.855 17 H 0.068 0.932 18 C -0.132 4.132 19 C 0.193 3.807 20 N -0.618 5.618 21 C -0.239 4.239 22 H 0.080 0.920 23 C -0.064 4.064 24 N -0.951 5.951 25 Si 0.978 3.022 26 H -0.274 1.274 27 H -0.294 1.294 28 H -0.280 1.280 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.134 0.866 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.010 0.990 45 H 0.014 0.986 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.735 24.166 -0.542 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.109 4.109 5 C -0.143 4.143 6 C -0.108 4.108 7 C -0.148 4.148 8 C 0.344 3.656 9 O -0.462 6.462 10 N -0.314 5.314 11 C -0.017 4.017 12 C -0.161 4.161 13 C -0.158 4.158 14 C 0.045 3.955 15 H 0.064 0.936 16 C 0.040 3.960 17 H 0.086 0.914 18 C -0.172 4.172 19 C 0.067 3.933 20 N -0.343 5.343 21 C -0.368 4.368 22 H 0.098 0.902 23 C -0.257 4.257 24 N -0.600 5.600 25 Si 0.806 3.194 26 H -0.200 1.200 27 H -0.220 1.220 28 H -0.207 1.207 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.168 0.832 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.152 0.848 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.028 0.972 45 H 0.032 0.968 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.241 23.783 -0.133 25.895 hybrid contribution -1.096 -1.692 -0.116 2.019 sum 9.146 22.091 -0.249 23.911 Atomic orbital electron populations 1.20811 0.91175 1.02412 1.02761 1.20072 0.96309 0.92293 0.97086 1.21274 0.95113 0.97083 1.00832 1.21727 0.93797 0.99542 0.95848 1.21430 1.01587 0.91287 0.99978 1.21413 0.91451 1.00247 0.97711 1.19693 0.94960 0.91599 1.08566 1.19037 0.81569 0.84331 0.80638 1.90749 1.35796 1.80200 1.39477 1.47584 1.45814 1.12270 1.25706 1.22203 0.92092 1.02914 0.84466 1.21880 1.01186 0.95098 0.97899 1.21900 0.99005 0.96547 0.98320 1.21529 0.96495 0.84136 0.93356 0.93598 1.21281 0.95058 0.81948 0.97758 0.91416 1.22929 0.98591 0.94915 1.00721 1.20849 0.89932 0.91859 0.90614 1.44959 1.40627 1.01420 1.47317 1.19360 1.11442 0.88720 1.17276 0.90170 1.25628 1.01314 0.98058 1.00744 1.70168 1.40013 1.10858 1.38922 0.85159 0.78478 0.77433 0.78295 1.20023 1.22047 1.20653 0.91139 0.88875 0.94223 0.83171 0.82372 0.82561 0.84842 0.89732 0.87154 0.87799 0.91905 0.92692 0.93246 0.89643 0.91471 0.97216 0.96754 0.94397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.27 71.24 0.66 -1.95 16 2 C -0.06 -1.23 5.91 -19.61 -0.12 -1.35 16 3 C -0.13 -1.84 9.71 22.23 0.22 -1.62 16 4 C -0.09 -1.03 10.04 22.33 0.22 -0.80 16 5 C -0.13 -1.56 10.03 22.23 0.22 -1.34 16 6 C -0.09 -1.64 7.78 22.53 0.18 -1.47 16 7 C -0.15 -3.58 4.53 -20.09 -0.09 -3.67 16 8 C 0.55 18.19 6.03 86.79 0.52 18.71 16 9 O -0.58 -24.23 15.31 -3.86 -0.06 -24.29 16 10 N -0.58 -18.16 2.73 -797.80 -2.18 -20.34 16 11 C 0.10 2.36 5.23 86.48 0.45 2.81 16 12 C -0.12 -2.93 6.11 30.66 0.19 -2.74 16 13 C -0.12 -4.05 5.10 30.51 0.16 -3.90 16 14 C 0.15 6.42 3.59 45.07 0.16 6.58 16 15 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 16 C 0.15 5.71 3.12 46.14 0.14 5.85 16 17 H 0.07 3.14 6.93 -2.39 -0.02 3.12 16 18 C -0.13 -5.23 6.08 31.61 0.19 -5.03 16 19 C 0.19 9.87 5.19 86.80 0.45 10.32 16 20 N -0.62 -32.42 2.91 -667.06 -1.94 -34.36 16 21 C -0.24 -13.65 10.29 84.04 0.86 -12.79 16 22 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 23 C -0.06 -3.74 5.49 84.86 0.47 -3.27 16 24 N -0.95 -58.24 10.33 21.65 0.22 -58.02 16 25 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 26 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 28 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 31 H 0.04 1.13 6.58 -2.39 -0.02 1.11 16 32 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 34 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 35 H 0.13 2.23 7.75 -2.91 -0.02 2.21 16 36 H 0.08 1.70 7.53 -2.39 -0.02 1.69 16 37 H 0.11 2.00 5.37 -2.39 -0.01 1.99 16 38 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.99 7.12 -2.38 -0.02 1.97 16 41 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.09 2.93 6.81 -2.39 -0.02 2.91 16 43 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.01 0.56 7.30 -2.39 -0.02 0.54 16 45 H 0.01 0.80 7.60 -2.39 -0.02 0.78 16 46 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -74.74 355.92 3.92 -70.82 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.97 Total: 13.15 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 4.89 Total: 4.34 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -3.90 Total: -112.72 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.06 Total: -24.29 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -74.74 3.92 -70.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049300710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.909 kcal (2) G-P(sol) polarization free energy of solvation -74.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds