Wall clock time and date at job start Fri Apr 10 2020 23:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.37977 * 120.07460 * 2 1 4 4 C 1.38338 * 120.14639 * 180.23389 * 3 2 1 5 5 C 1.38383 * 120.28703 * 359.78541 * 4 3 2 6 6 C 1.37930 * 120.15221 * 0.02562 * 5 4 3 7 7 C 1.39551 * 120.07176 * 179.78775 * 2 1 3 8 8 C 1.47844 * 120.14489 * 0.02801 * 7 2 1 9 9 O 1.21551 * 120.00642 * 53.97824 * 8 7 2 10 10 N 1.34779 * 119.99770 * 233.97866 * 8 7 2 11 11 C 1.47851 * 121.94354 * 355.11530 * 10 8 7 12 12 C 1.52710 * 111.24038 * 127.34601 * 11 10 8 13 13 C 1.53868 * 111.52613 * 48.17351 * 12 11 10 14 14 C 1.51082 * 107.33999 * 303.07394 * 13 12 11 15 15 H 1.08996 * 108.30909 * 308.76133 * 14 13 12 16 16 C 1.45721 * 122.22933 * 174.40208 * 10 8 7 17 17 H 1.09006 * 111.64419 * 119.13591 * 16 10 8 18 18 C 1.53433 * 116.37649 * 350.09299 * 16 10 8 19 19 C 1.55475 * 101.67215 * 207.26743 * 18 16 10 20 20 N 1.45033 * 119.18986 * 183.88210 * 14 13 12 21 21 C 1.36930 * 126.56142 * 28.78996 * 20 14 13 22 22 H 1.08004 * 119.99736 * 0.23242 * 21 20 14 23 23 C 1.38805 * 120.00325 * 180.23490 * 21 20 14 24 24 N 1.31620 * 120.00115 * 347.04915 * 23 21 20 25 25 Si 1.86803 * 120.00221 * 167.04592 * 23 21 20 26 26 H 1.48500 * 109.47241 * 275.02943 * 25 23 21 27 27 H 1.48501 * 109.47012 * 35.02868 * 25 23 21 28 28 H 1.48502 * 109.47230 * 155.02914 * 25 23 21 29 29 H 1.08995 * 109.46881 * 264.92492 * 1 2 3 30 30 H 1.09002 * 109.46738 * 24.92278 * 1 2 3 31 31 H 1.09004 * 109.46803 * 144.92130 * 1 2 3 32 32 H 1.08006 * 119.92723 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.85750 * 179.76450 * 4 3 2 34 34 H 1.08008 * 119.92414 * 179.97438 * 5 4 3 35 35 H 1.07993 * 120.08244 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.35831 * 6.69305 * 11 10 8 37 37 H 1.09006 * 108.74183 * 247.59429 * 11 10 8 38 38 H 1.09002 * 109.07142 * 287.64812 * 12 11 10 39 39 H 1.09004 * 109.01582 * 168.66099 * 12 11 10 40 40 H 1.09000 * 109.88732 * 183.61520 * 13 12 11 41 41 H 1.09001 * 109.88546 * 62.52961 * 13 12 11 42 42 H 1.08996 * 110.98861 * 89.16720 * 18 16 10 43 43 H 1.09002 * 111.01588 * 325.37335 * 18 16 10 44 44 H 1.08998 * 109.95960 * 263.22014 * 19 18 16 45 45 H 1.09003 * 109.98810 * 141.99194 * 19 18 16 46 46 H 0.96993 * 120.00616 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1958 -0.0049 5 6 4.2813 0.0017 -0.0053 6 6 3.6024 -1.1989 -0.0014 7 6 2.2064 -1.2077 0.0045 8 6 1.4720 -2.4908 0.0086 9 8 0.6332 -2.7139 -0.8423 10 7 1.7327 -3.4134 0.9560 11 6 2.8155 -3.2331 1.9464 12 6 2.2975 -3.4141 3.3715 13 6 1.4511 -4.6919 3.5066 14 6 0.3263 -4.5952 2.5026 15 1 -0.1676 -3.6325 2.6334 16 6 0.9579 -4.6414 1.0789 17 1 1.5816 -5.5254 0.9452 18 6 -0.3174 -4.7306 0.2305 19 6 -1.1908 -5.6995 1.0765 20 7 -0.6837 -5.6356 2.4695 21 6 -1.0948 -6.4071 3.5234 22 1 -0.6569 -6.2643 4.5003 23 6 -2.0743 -7.3726 3.3363 24 7 -2.7865 -7.3818 2.2295 25 14 -2.3816 -8.6593 4.6553 26 1 -1.4341 -9.7885 4.4756 27 1 -2.1797 -8.0523 5.9954 28 1 -3.7752 -9.1598 4.5434 29 1 -0.3633 -0.0909 1.0236 30 1 -0.3633 0.9320 -0.4331 31 1 -0.3633 -0.8410 -0.5906 32 1 1.6585 2.1294 -0.0004 33 1 4.1184 2.1331 -0.0087 34 1 5.3614 0.0099 -0.0096 35 1 4.1493 -2.1301 -0.0022 36 1 3.2369 -2.2332 1.8431 37 1 3.5940 -3.9710 1.7523 38 1 1.6867 -2.5523 3.6406 39 1 3.1462 -3.4755 4.0528 40 1 1.0430 -4.7615 4.5149 41 1 2.0645 -5.5673 3.2929 42 1 -0.1044 -5.1533 -0.7513 43 1 -0.7945 -3.7549 0.1381 44 1 -1.0977 -6.7155 0.6928 45 1 -2.2338 -5.3843 1.0454 46 1 -3.4711 -8.0563 2.0988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049300712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:20 Heat of formation + Delta-G solvation = 9.525898 kcal Electronic energy + Delta-G solvation = -27296.610135 eV Core-core repulsion = 23765.133629 eV Total energy + Delta-G solvation = -3531.476506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.96265 -40.22871 -38.77063 -36.98881 -34.33739 -34.00983 -33.60219 -32.24882 -30.66672 -29.69421 -28.05937 -26.49255 -26.19615 -24.12484 -23.06820 -22.82050 -22.03479 -21.41317 -20.21346 -18.69476 -17.81474 -17.34640 -16.88115 -16.70847 -16.67098 -16.09911 -15.70277 -15.55438 -15.45148 -14.91946 -14.75993 -14.66592 -14.28535 -14.06778 -14.02418 -13.87938 -13.48209 -13.18863 -13.15527 -13.00537 -12.82466 -12.73071 -12.58527 -12.17890 -12.10321 -12.01959 -11.91428 -11.79283 -11.73604 -11.58589 -11.45018 -10.75260 -10.46206 -9.80804 -9.63634 -9.56395 -8.94719 -7.88327 -5.21643 0.08611 0.42869 1.45209 1.48608 1.56128 1.62879 1.96045 2.49867 2.80165 3.27612 3.30400 3.52076 3.85809 3.89816 3.92275 3.98253 4.02202 4.05228 4.19857 4.22000 4.30041 4.42199 4.51010 4.53188 4.56300 4.63295 4.66471 4.72440 4.78169 4.79857 4.88677 4.99238 5.03080 5.07387 5.10769 5.24666 5.25657 5.40592 5.43100 5.45959 5.54341 5.54620 5.57265 5.60993 5.67717 6.01959 6.14367 6.45149 7.02223 7.13356 7.73455 8.43972 9.25104 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.003694 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.372505 B = 7579.056742 C = 8069.273244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.058 4.058 3 C -0.127 4.127 4 C -0.093 4.093 5 C -0.124 4.124 6 C -0.091 4.091 7 C -0.146 4.146 8 C 0.556 3.444 9 O -0.568 6.568 10 N -0.592 5.592 11 C 0.099 3.901 12 C -0.119 4.119 13 C -0.111 4.111 14 C 0.155 3.845 15 H -0.007 1.007 16 C 0.132 3.868 17 H 0.086 0.914 18 C -0.109 4.109 19 C 0.183 3.817 20 N -0.610 5.610 21 C -0.237 4.237 22 H 0.090 0.910 23 C -0.067 4.067 24 N -0.952 5.952 25 Si 0.977 3.023 26 H -0.283 1.283 27 H -0.266 1.266 28 H -0.299 1.299 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.113 0.887 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.017 0.983 45 H 0.007 0.993 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.215 17.900 -1.518 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.111 4.111 5 C -0.142 4.142 6 C -0.109 4.109 7 C -0.149 4.149 8 C 0.346 3.654 9 O -0.448 6.448 10 N -0.324 5.324 11 C -0.021 4.021 12 C -0.158 4.158 13 C -0.149 4.149 14 C 0.047 3.953 15 H 0.011 0.989 16 C 0.027 3.973 17 H 0.104 0.896 18 C -0.147 4.147 19 C 0.058 3.942 20 N -0.335 5.335 21 C -0.366 4.366 22 H 0.107 0.893 23 C -0.260 4.260 24 N -0.600 5.600 25 Si 0.805 3.195 26 H -0.210 1.210 27 H -0.191 1.191 28 H -0.225 1.225 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.165 0.835 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.158 0.842 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.035 0.965 45 H 0.025 0.975 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 18.624 17.630 -1.907 25.716 hybrid contribution -1.353 -1.247 0.347 1.873 sum 17.271 16.383 -1.560 23.856 Atomic orbital electron populations 1.20973 0.91710 1.03830 1.02236 1.20030 0.96097 0.92500 0.97217 1.21283 0.95287 0.96958 1.00996 1.21723 0.93629 0.99721 0.96029 1.21458 1.01665 0.91223 0.99850 1.21454 0.91294 1.00392 0.97797 1.19743 0.95159 0.91750 1.08199 1.18873 0.82054 0.83927 0.80509 1.90738 1.35656 1.79492 1.38917 1.48043 1.34641 1.18619 1.31068 1.22247 0.88288 1.04603 0.87001 1.21876 1.00690 0.96440 0.96764 1.21408 0.95902 0.99001 0.98607 1.20953 0.89634 0.90129 0.94612 0.98921 1.22068 0.91919 0.86596 0.96758 0.89649 1.22613 0.95281 0.99462 0.97387 1.21404 0.94249 0.95288 0.83295 1.44347 1.41985 1.40978 1.06200 1.19383 1.16749 1.10789 0.89639 0.89267 1.25677 0.98253 1.01984 1.00053 1.70208 1.24533 1.36440 1.28821 0.85110 0.76267 0.79335 0.78754 1.21024 1.19061 1.22550 0.91801 0.89251 0.92442 0.83550 0.82407 0.82235 0.84151 0.87139 0.89072 0.92503 0.86852 0.92449 0.91280 0.91625 0.91708 0.96488 0.97466 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.53 71.24 0.68 -2.74 16 2 C -0.06 -1.38 5.91 -19.61 -0.12 -1.49 16 3 C -0.13 -2.12 9.67 22.23 0.21 -1.90 16 4 C -0.09 -1.14 10.04 22.33 0.22 -0.91 16 5 C -0.12 -1.54 10.03 22.23 0.22 -1.32 16 6 C -0.09 -1.63 7.48 22.53 0.17 -1.46 16 7 C -0.15 -3.72 4.95 -20.09 -0.10 -3.81 16 8 C 0.56 18.52 6.55 86.79 0.57 19.09 16 9 O -0.57 -23.36 12.11 -3.88 -0.05 -23.41 16 10 N -0.59 -18.52 2.92 -793.88 -2.32 -20.84 16 11 C 0.10 2.13 5.54 86.02 0.48 2.61 16 12 C -0.12 -2.72 5.92 30.79 0.18 -2.54 16 13 C -0.11 -3.65 5.45 30.26 0.16 -3.48 16 14 C 0.15 6.62 2.59 45.62 0.12 6.74 16 15 H -0.01 -0.31 8.03 -2.39 -0.02 -0.33 16 16 C 0.13 5.13 3.35 46.26 0.16 5.28 16 17 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 18 C -0.11 -4.95 4.93 31.59 0.16 -4.79 16 19 C 0.18 9.95 5.46 86.87 0.47 10.43 16 20 N -0.61 -32.69 3.35 -669.83 -2.24 -34.93 16 21 C -0.24 -13.44 9.91 84.03 0.83 -12.60 16 22 H 0.09 4.75 7.34 -2.91 -0.02 4.73 16 23 C -0.07 -3.87 5.44 84.86 0.46 -3.41 16 24 N -0.95 -59.51 10.67 21.65 0.23 -59.28 16 25 Si 0.98 46.34 29.57 68.60 2.03 48.37 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.82 8.05 -2.39 -0.02 1.80 16 31 H 0.06 1.90 5.90 -2.39 -0.01 1.89 16 32 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 33 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.14 2.08 7.38 -2.91 -0.02 2.05 16 36 H 0.11 1.90 4.88 -2.39 -0.01 1.88 16 37 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.06 1.99 7.70 -2.39 -0.02 1.97 16 41 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 42 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.06 3.11 6.39 -2.39 -0.02 3.10 16 44 H 0.02 0.99 7.56 -2.39 -0.02 0.98 16 45 H 0.01 0.44 7.58 -2.39 -0.02 0.42 16 46 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -76.18 352.95 3.50 -72.68 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.97 Total: 13.74 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 4.88 Total: 3.68 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -4.33 Total: -115.05 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -76.18 3.50 -72.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049300712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.203 kcal (2) G-P(sol) polarization free energy of solvation -76.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds