Wall clock time and date at job start Fri Apr 10 2020 23:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38373 * 119.93169 * 2 1 4 4 C 1.38338 * 120.29491 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14374 * 0.02562 * 4 3 2 6 6 C 1.39558 * 119.85235 * 0.02562 * 5 4 3 7 7 C 1.47851 * 120.14196 * 180.02562 * 6 5 4 8 8 O 1.21554 * 119.99319 * 131.60168 * 7 6 5 9 9 N 1.34775 * 120.00295 * 311.60072 * 7 6 5 10 10 C 1.47850 * 122.22509 * 4.38893 * 9 7 6 11 11 C 1.52725 * 111.05281 * 232.46784 * 10 9 7 12 12 C 1.53867 * 111.52567 * 311.45970 * 11 10 9 13 13 C 1.51079 * 107.34025 * 56.93036 * 12 11 10 14 14 H 1.09007 * 108.73317 * 51.47348 * 13 12 11 15 15 C 1.45723 * 122.22525 * 184.10147 * 9 7 6 16 16 H 1.09003 * 111.06426 * 240.54820 * 15 9 7 17 17 C 1.53309 * 115.80832 * 10.52716 * 15 9 7 18 18 C 1.55470 * 101.35251 * 153.07616 * 17 15 9 19 19 N 1.45026 * 119.19712 * 176.73926 * 13 12 11 20 20 C 1.36940 * 126.55737 * 331.18986 * 19 13 12 21 21 H 1.07993 * 120.00175 * 0.02562 * 20 19 13 22 22 C 1.38818 * 119.99853 * 179.97438 * 20 19 13 23 23 N 1.31620 * 119.99724 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00025 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47182 * 90.00170 * 24 22 20 26 26 H 1.48500 * 109.47317 * 210.00356 * 24 22 20 27 27 H 1.48507 * 109.47187 * 329.99933 * 24 22 20 28 28 C 1.37940 * 119.92459 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47011 * 90.00025 * 1 2 3 30 30 H 1.08997 * 109.47031 * 209.99857 * 1 2 3 31 31 H 1.08999 * 109.46526 * 330.00156 * 1 2 3 32 32 H 1.07997 * 119.85240 * 359.72486 * 3 2 1 33 33 H 1.07999 * 119.92872 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.07652 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.16738 * 352.86996 * 10 9 7 36 36 H 1.09000 * 109.16578 * 112.11486 * 10 9 7 37 37 H 1.08999 * 109.07212 * 71.99218 * 11 10 9 38 38 H 1.09009 * 109.06546 * 191.00307 * 11 10 9 39 39 H 1.08993 * 109.88173 * 176.39241 * 12 11 10 40 40 H 1.08995 * 109.88156 * 297.40164 * 12 11 10 41 41 H 1.08999 * 111.70845 * 34.83412 * 17 15 9 42 42 H 1.09002 * 110.56812 * 270.81365 * 17 15 9 43 43 H 1.09004 * 109.95647 * 217.36340 * 18 17 15 44 44 H 1.09000 * 109.96668 * 96.12539 * 18 17 15 45 45 H 0.97000 * 119.99407 * 179.97438 * 23 22 20 46 46 H 1.08006 * 120.07162 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1992 0.0000 4 6 3.5808 1.2079 0.0005 5 6 4.2812 0.0192 0.0005 6 6 3.5911 -1.1938 -0.0005 7 6 4.3352 -2.4714 0.0000 8 8 4.0361 -3.3485 0.7867 9 7 5.3450 -2.6636 -0.8716 10 6 5.8122 -1.5983 -1.7842 11 6 5.8415 -2.0885 -3.2303 12 6 6.5503 -3.4488 -3.3511 13 6 5.8296 -4.4145 -2.4398 14 1 4.7629 -4.3745 -2.6605 15 6 6.0529 -3.9332 -0.9731 16 1 7.1127 -3.8098 -0.7498 17 6 5.4259 -5.1094 -0.2156 18 6 5.9319 -6.3175 -1.0532 19 7 6.2463 -5.8033 -2.4090 20 6 6.8196 -6.5057 -3.4353 21 1 7.0018 -6.0234 -4.3842 22 6 7.1675 -7.8375 -3.2555 23 7 6.9459 -8.4252 -2.0988 24 14 7.9501 -8.7956 -4.6551 25 1 9.4270 -8.6582 -4.5839 26 1 7.5802 -10.2293 -4.5412 27 1 7.4651 -8.2609 -5.9529 28 6 2.1951 -1.1955 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 1.6540 2.1324 -0.0045 33 1 4.1137 2.1473 0.0001 34 1 5.3612 0.0273 0.0014 35 1 5.1403 -0.7432 -1.7098 36 1 6.8161 -1.2909 -1.4911 37 1 4.8186 -2.1862 -3.5940 38 1 6.3689 -1.3575 -3.8434 39 1 6.4999 -3.8029 -4.3807 40 1 7.5913 -3.3531 -3.0427 41 1 4.3371 -5.0586 -0.2220 42 1 5.8070 -5.1548 0.8046 43 1 5.1545 -7.0790 -1.1151 44 1 6.8286 -6.7371 -0.5972 45 1 7.1886 -9.3559 -1.9733 46 1 1.6551 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049313731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:23 Heat of formation + Delta-G solvation = 28.698828 kcal Electronic energy + Delta-G solvation = -26897.955546 eV Core-core repulsion = 23367.310441 eV Total energy + Delta-G solvation = -3530.645105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66036 -39.13624 -37.49734 -35.46263 -33.19577 -32.60204 -32.07788 -31.16781 -28.87651 -28.25518 -27.08790 -25.19935 -24.44827 -23.05475 -21.99170 -21.37609 -20.82008 -19.61692 -18.90175 -16.91632 -16.61929 -16.22799 -15.86919 -15.36101 -15.04250 -14.64929 -14.49724 -14.17176 -14.02666 -13.88629 -13.60721 -13.34985 -13.26093 -12.81979 -12.48393 -12.41675 -12.24882 -12.17000 -11.95576 -11.61842 -11.51756 -11.30625 -11.05250 -10.83209 -10.66696 -10.48637 -10.42389 -10.08209 -9.98037 -9.83486 -9.59607 -9.21280 -9.00339 -8.79748 -8.57312 -8.20416 -6.80840 -5.67972 -3.02296 0.88176 1.15704 2.84695 3.14434 3.41415 3.46209 3.48477 3.61760 4.43489 4.51464 4.59011 4.66535 4.85445 4.89009 5.07181 5.10540 5.17744 5.27786 5.36849 5.37181 5.40700 5.46331 5.53713 5.62130 5.67608 5.76571 5.80673 5.86365 5.87728 6.01526 6.09520 6.16971 6.20914 6.27912 6.31088 6.34245 6.41871 6.57597 6.71065 6.73494 6.81447 6.90823 7.18772 7.60037 7.65629 7.72202 7.86141 8.26996 8.39950 9.21399 9.85269 10.53659 11.44034 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025108 B = 0.003387 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.926965 B = 8263.831489 C = 8647.964966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.107 4.107 4 C -0.122 4.122 5 C -0.100 4.100 6 C -0.112 4.112 7 C 0.557 3.443 8 O -0.526 6.526 9 N -0.592 5.592 10 C 0.100 3.900 11 C -0.129 4.129 12 C -0.116 4.116 13 C 0.159 3.841 14 H 0.018 0.982 15 C 0.116 3.884 16 H 0.082 0.918 17 C -0.127 4.127 18 C 0.172 3.828 19 N -0.593 5.593 20 C -0.226 4.226 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.072 4.072 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.057 0.943 45 H 0.252 0.748 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.621 21.609 2.751 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.125 4.125 4 C -0.140 4.140 5 C -0.118 4.118 6 C -0.115 4.115 7 C 0.345 3.655 8 O -0.403 6.403 9 N -0.325 5.325 10 C -0.023 4.023 11 C -0.168 4.168 12 C -0.154 4.154 13 C 0.050 3.950 14 H 0.035 0.965 15 C 0.012 3.988 16 H 0.100 0.900 17 C -0.165 4.165 18 C 0.047 3.953 19 N -0.318 5.318 20 C -0.355 4.355 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.091 4.091 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.713 20.875 3.133 22.473 hybrid contribution 0.570 -0.500 -0.799 1.101 sum -7.143 20.375 2.334 21.716 Atomic orbital electron populations 1.20804 0.90789 1.02989 1.02536 1.19876 0.96361 0.92798 1.00094 1.21164 0.94291 0.97503 0.99554 1.21063 0.94244 0.97852 1.00829 1.21332 1.00111 0.91492 0.98889 1.20044 0.94359 0.93579 1.03548 1.18274 0.79758 0.86733 0.80725 1.90806 1.67039 1.43649 1.38790 1.47975 1.33706 1.14285 1.36489 1.22023 1.00022 0.90285 0.89930 1.21902 1.01570 0.98051 0.95258 1.21429 0.99450 0.93487 1.01060 1.20863 0.96128 0.86219 0.91840 0.96467 1.22589 0.95033 0.81882 0.99310 0.89964 1.22888 1.01147 0.94230 0.98247 1.21756 0.99138 0.91396 0.82988 1.44100 1.71803 1.04764 1.11102 1.18991 1.32596 0.92591 0.91287 0.90368 1.24809 1.01513 0.96884 0.97187 1.69952 1.52547 1.11745 1.22427 0.86146 0.79041 0.79442 0.81283 1.21647 1.21707 1.20745 1.21074 0.92441 0.98281 0.97258 0.90989 0.91252 0.91448 0.85856 0.85518 0.85295 0.89410 0.91498 0.91854 0.90933 0.91483 0.91745 0.90357 0.91973 0.94289 0.92493 0.93732 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.48 16 2 C -0.09 -0.90 5.87 -104.68 -0.61 -1.52 16 3 C -0.11 -0.92 9.69 -39.49 -0.38 -1.30 16 4 C -0.12 -1.06 10.03 -39.64 -0.40 -1.45 16 5 C -0.10 -1.05 7.40 -39.18 -0.29 -1.34 16 6 C -0.11 -1.50 5.15 -104.97 -0.54 -2.04 16 7 C 0.56 9.38 7.20 -12.33 -0.09 9.29 16 8 O -0.53 -10.65 13.94 5.32 0.07 -10.58 16 9 N -0.59 -9.57 2.91 -164.87 -0.48 -10.05 16 10 C 0.10 1.23 5.31 -3.44 -0.02 1.21 16 11 C -0.13 -1.67 5.93 -26.42 -0.16 -1.83 16 12 C -0.12 -1.99 5.44 -27.25 -0.15 -2.14 16 13 C 0.16 3.35 2.59 -68.10 -0.18 3.17 16 14 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 15 C 0.12 2.25 3.36 -66.60 -0.22 2.02 16 16 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 17 C -0.13 -2.75 4.87 -25.26 -0.12 -2.87 16 18 C 0.17 4.39 5.45 -1.70 -0.01 4.38 16 19 N -0.59 -15.33 3.34 -162.98 -0.54 -15.87 16 20 C -0.23 -6.28 9.94 -15.06 -0.15 -6.43 16 21 H 0.08 2.08 7.33 -52.49 -0.38 1.69 16 22 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 23 N -0.92 -27.40 10.46 55.49 0.58 -26.82 16 24 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 C -0.07 -0.89 9.37 -39.19 -0.37 -1.26 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.13 1.20 6.87 -52.49 -0.36 0.83 16 35 H 0.09 0.92 4.60 -51.93 -0.24 0.68 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.07 1.20 7.73 -51.93 -0.40 0.80 16 40 H 0.06 1.11 8.12 -51.93 -0.42 0.68 16 41 H 0.08 1.78 6.38 -51.93 -0.33 1.44 16 42 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 43 H 0.04 1.09 7.81 -51.93 -0.41 0.69 16 44 H 0.06 1.58 7.19 -51.93 -0.37 1.21 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -32.65 356.21 -10.56 -43.22 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.11 Total: 0.47 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -3.42 Total: -2.91 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.44 Total: -52.74 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.65 -10.56 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049313731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.915 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds