Wall clock time and date at job start Fri Apr 10 2020 23:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38373 * 119.93169 * 2 1 4 4 C 1.38338 * 120.29491 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14374 * 0.02562 * 4 3 2 6 6 C 1.39558 * 119.85235 * 0.02562 * 5 4 3 7 7 C 1.47851 * 120.14196 * 180.02562 * 6 5 4 8 8 O 1.21554 * 119.99319 * 131.60168 * 7 6 5 9 9 N 1.34775 * 120.00295 * 311.60072 * 7 6 5 10 10 C 1.47850 * 122.22509 * 4.38893 * 9 7 6 11 11 C 1.52725 * 111.05281 * 232.46784 * 10 9 7 12 12 C 1.53867 * 111.52567 * 311.45970 * 11 10 9 13 13 C 1.51079 * 107.34025 * 56.93036 * 12 11 10 14 14 H 1.09007 * 108.73317 * 51.47348 * 13 12 11 15 15 C 1.45723 * 122.22525 * 184.10147 * 9 7 6 16 16 H 1.09003 * 111.06426 * 240.54820 * 15 9 7 17 17 C 1.53309 * 115.80832 * 10.52716 * 15 9 7 18 18 C 1.55470 * 101.35251 * 153.07616 * 17 15 9 19 19 N 1.45026 * 119.19712 * 176.73926 * 13 12 11 20 20 C 1.36940 * 126.55737 * 331.18986 * 19 13 12 21 21 H 1.07993 * 120.00175 * 0.02562 * 20 19 13 22 22 C 1.38818 * 119.99853 * 179.97438 * 20 19 13 23 23 N 1.31620 * 119.99724 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00025 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47182 * 90.00170 * 24 22 20 26 26 H 1.48500 * 109.47317 * 210.00356 * 24 22 20 27 27 H 1.48507 * 109.47187 * 329.99933 * 24 22 20 28 28 C 1.37940 * 119.92459 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47011 * 90.00025 * 1 2 3 30 30 H 1.08997 * 109.47031 * 209.99857 * 1 2 3 31 31 H 1.08999 * 109.46526 * 330.00156 * 1 2 3 32 32 H 1.07997 * 119.85240 * 359.72486 * 3 2 1 33 33 H 1.07999 * 119.92872 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.07652 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.16738 * 352.86996 * 10 9 7 36 36 H 1.09000 * 109.16578 * 112.11486 * 10 9 7 37 37 H 1.08999 * 109.07212 * 71.99218 * 11 10 9 38 38 H 1.09009 * 109.06546 * 191.00307 * 11 10 9 39 39 H 1.08993 * 109.88173 * 176.39241 * 12 11 10 40 40 H 1.08995 * 109.88156 * 297.40164 * 12 11 10 41 41 H 1.08999 * 111.70845 * 34.83412 * 17 15 9 42 42 H 1.09002 * 110.56812 * 270.81365 * 17 15 9 43 43 H 1.09004 * 109.95647 * 217.36340 * 18 17 15 44 44 H 1.09000 * 109.96668 * 96.12539 * 18 17 15 45 45 H 0.97000 * 119.99407 * 179.97438 * 23 22 20 46 46 H 1.08006 * 120.07162 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1992 0.0000 4 6 3.5808 1.2079 0.0005 5 6 4.2812 0.0192 0.0005 6 6 3.5911 -1.1938 -0.0005 7 6 4.3352 -2.4714 0.0000 8 8 4.0361 -3.3485 0.7867 9 7 5.3450 -2.6636 -0.8716 10 6 5.8122 -1.5983 -1.7842 11 6 5.8415 -2.0885 -3.2303 12 6 6.5503 -3.4488 -3.3511 13 6 5.8296 -4.4145 -2.4398 14 1 4.7629 -4.3745 -2.6605 15 6 6.0529 -3.9332 -0.9731 16 1 7.1127 -3.8098 -0.7498 17 6 5.4259 -5.1094 -0.2156 18 6 5.9319 -6.3175 -1.0532 19 7 6.2463 -5.8033 -2.4090 20 6 6.8196 -6.5057 -3.4353 21 1 7.0018 -6.0234 -4.3842 22 6 7.1675 -7.8375 -3.2555 23 7 6.9459 -8.4252 -2.0988 24 14 7.9501 -8.7956 -4.6551 25 1 9.4270 -8.6582 -4.5839 26 1 7.5802 -10.2293 -4.5412 27 1 7.4651 -8.2609 -5.9529 28 6 2.1951 -1.1955 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 1.6540 2.1324 -0.0045 33 1 4.1137 2.1473 0.0001 34 1 5.3612 0.0273 0.0014 35 1 5.1403 -0.7432 -1.7098 36 1 6.8161 -1.2909 -1.4911 37 1 4.8186 -2.1862 -3.5940 38 1 6.3689 -1.3575 -3.8434 39 1 6.4999 -3.8029 -4.3807 40 1 7.5913 -3.3531 -3.0427 41 1 4.3371 -5.0586 -0.2220 42 1 5.8070 -5.1548 0.8046 43 1 5.1545 -7.0790 -1.1151 44 1 6.8286 -6.7371 -0.5972 45 1 7.1886 -9.3559 -1.9733 46 1 1.6551 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049313731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:23 Heat of formation + Delta-G solvation = 9.795814 kcal Electronic energy + Delta-G solvation = -26898.775242 eV Core-core repulsion = 23367.310441 eV Total energy + Delta-G solvation = -3531.464801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.94157 -40.21623 -38.89163 -37.00681 -34.44383 -34.08732 -33.47505 -32.13994 -30.71242 -29.75283 -27.82014 -26.63178 -26.29503 -24.19746 -23.01270 -22.55741 -22.42369 -21.36071 -20.15200 -18.63249 -17.68271 -17.32683 -17.25291 -16.78920 -16.57009 -16.08776 -15.69488 -15.55216 -15.43665 -14.92278 -14.77852 -14.55127 -14.32469 -14.10796 -14.04733 -13.87623 -13.46034 -13.17977 -13.04777 -13.00993 -12.81109 -12.71694 -12.54256 -12.26474 -12.08638 -12.02019 -11.86734 -11.80470 -11.75492 -11.59057 -11.47099 -10.78395 -10.52479 -9.90485 -9.61660 -9.55791 -8.93846 -7.85406 -5.22965 0.03702 0.39994 1.45022 1.47845 1.56204 1.63584 1.93426 2.49514 2.78152 3.26633 3.33123 3.50205 3.85860 3.88802 3.97122 3.99474 4.01577 4.04910 4.17187 4.21141 4.30575 4.40948 4.44186 4.51514 4.54723 4.62962 4.69642 4.77654 4.83760 4.88086 4.92390 4.97984 5.01197 5.06471 5.11161 5.25097 5.28003 5.38137 5.42565 5.44392 5.46732 5.55032 5.57460 5.61663 5.68927 6.00111 6.15533 6.43301 7.03222 7.10105 7.73300 8.43589 9.26524 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025108 B = 0.003387 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.926965 B = 8263.831489 C = 8647.964966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.099 4.099 4 C -0.112 4.112 5 C -0.100 4.100 6 C -0.134 4.134 7 C 0.552 3.448 8 O -0.575 6.575 9 N -0.592 5.592 10 C 0.095 3.905 11 C -0.119 4.119 12 C -0.111 4.111 13 C 0.154 3.846 14 H -0.004 1.004 15 C 0.130 3.870 16 H 0.087 0.913 17 C -0.110 4.110 18 C 0.183 3.817 19 N -0.612 5.612 20 C -0.234 4.234 21 H 0.090 0.910 22 C -0.070 4.070 23 N -0.955 5.955 24 Si 0.981 3.019 25 H -0.283 1.283 26 H -0.298 1.298 27 H -0.266 1.266 28 C -0.096 4.096 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.114 0.886 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.063 0.937 43 H -0.001 1.001 44 H 0.028 0.972 45 H 0.246 0.754 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 26.433 1.399 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.129 4.129 5 C -0.119 4.119 6 C -0.137 4.137 7 C 0.342 3.658 8 O -0.456 6.456 9 N -0.324 5.324 10 C -0.025 4.025 11 C -0.158 4.158 12 C -0.149 4.149 13 C 0.046 3.954 14 H 0.013 0.987 15 C 0.025 3.975 16 H 0.105 0.895 17 C -0.148 4.148 18 C 0.058 3.942 19 N -0.336 5.336 20 C -0.363 4.363 21 H 0.108 0.892 22 C -0.263 4.263 23 N -0.604 5.604 24 Si 0.809 3.191 25 H -0.209 1.209 26 H -0.225 1.225 27 H -0.191 1.191 28 C -0.115 4.115 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.163 0.837 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.017 0.983 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.324 25.772 1.746 26.849 hybrid contribution 0.345 -1.928 -0.354 1.991 sum -6.979 23.843 1.392 24.883 Atomic orbital electron populations 1.20860 0.89276 1.03697 1.03285 1.20148 0.97589 0.92368 0.99348 1.21616 0.94695 0.98051 0.97320 1.21489 0.94384 0.98397 0.98657 1.21522 1.00966 0.90877 0.98510 1.19810 0.94411 0.92715 1.06794 1.18948 0.79393 0.87658 0.79819 1.90767 1.68222 1.45741 1.40829 1.48047 1.33382 1.13749 1.37186 1.22380 1.02034 0.89582 0.88528 1.21886 1.01189 0.96236 0.96474 1.21408 0.99648 0.94651 0.99214 1.21025 0.95217 0.84858 0.94323 0.98707 1.22192 0.95284 0.82889 0.97110 0.89495 1.22604 1.00185 0.94169 0.97882 1.21442 0.96536 0.92129 0.84098 1.44359 1.71564 1.07076 1.10649 1.19433 1.31681 0.93034 0.92152 0.89203 1.25731 1.02698 0.98067 0.99766 1.70188 1.54060 1.11566 1.24621 0.85033 0.78095 0.77214 0.78717 1.20941 1.22495 1.19101 1.21077 0.92446 0.98786 0.99192 0.90149 0.92059 0.89274 0.82500 0.81847 0.83723 0.86737 0.88872 0.92443 0.86748 0.92382 0.91335 0.91740 0.91794 0.98317 0.95340 0.94448 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.74 16 2 C -0.09 -1.66 5.87 -19.90 -0.12 -1.78 16 3 C -0.10 -1.26 9.69 22.33 0.22 -1.04 16 4 C -0.11 -1.37 10.03 22.23 0.22 -1.15 16 5 C -0.10 -1.77 7.40 22.53 0.17 -1.61 16 6 C -0.13 -3.48 5.15 -20.09 -0.10 -3.58 16 7 C 0.55 18.86 7.20 86.79 0.62 19.49 16 8 O -0.58 -24.65 13.94 -3.88 -0.05 -24.70 16 9 N -0.59 -18.78 2.91 -793.79 -2.31 -21.09 16 10 C 0.10 2.03 5.31 86.03 0.46 2.48 16 11 C -0.12 -2.71 5.93 30.80 0.18 -2.52 16 12 C -0.11 -3.66 5.44 30.26 0.16 -3.49 16 13 C 0.15 6.63 2.59 45.67 0.12 6.75 16 14 H 0.00 -0.21 8.06 -2.38 -0.02 -0.23 16 15 C 0.13 5.15 3.36 46.27 0.16 5.31 16 16 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 17 C -0.11 -5.09 4.87 31.55 0.15 -4.94 16 18 C 0.18 10.09 5.45 86.87 0.47 10.56 16 19 N -0.61 -33.02 3.34 -669.55 -2.24 -35.26 16 20 C -0.23 -13.33 9.94 84.03 0.84 -12.49 16 21 H 0.09 4.78 7.33 -2.91 -0.02 4.76 16 22 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 23 N -0.96 -59.88 10.46 21.65 0.23 -59.65 16 24 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 C -0.10 -2.39 9.37 22.53 0.21 -2.18 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 31 H 0.09 0.75 8.08 -2.39 -0.02 0.73 16 32 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 33 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.15 2.05 6.87 -2.91 -0.02 2.03 16 35 H 0.11 1.91 4.60 -2.39 -0.01 1.90 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 38 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.06 2.01 7.73 -2.39 -0.02 1.99 16 40 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 41 H 0.06 3.17 6.38 -2.39 -0.02 3.16 16 42 H 0.06 2.89 8.13 -2.39 -0.02 2.87 16 43 H 0.00 -0.09 7.81 -2.38 -0.02 -0.11 16 44 H 0.03 1.70 7.19 -2.39 -0.02 1.69 16 45 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.11 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -77.64 356.21 3.56 -74.08 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.96 Total: 12.58 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 4.94 Total: 5.45 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -4.32 Total: -116.00 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -77.64 3.56 -74.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049313731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.877 kcal (2) G-P(sol) polarization free energy of solvation -77.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds