Wall clock time and date at job start Fri Apr 10 2020 23:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38384 * 119.93007 * 2 1 4 4 C 1.38337 * 120.29449 * 180.02562 * 3 2 1 5 5 C 1.37981 * 120.14416 * 359.97438 * 4 3 2 6 6 C 1.39553 * 119.85135 * 0.02562 * 5 4 3 7 7 C 1.47847 * 120.14015 * 179.97438 * 6 5 4 8 8 O 1.21560 * 119.99926 * 147.65131 * 7 6 5 9 9 N 1.34779 * 120.00434 * 327.65351 * 7 6 5 10 10 C 1.45731 * 117.76102 * 187.70437 * 9 7 6 11 11 C 1.53053 * 109.55872 * 141.13287 * 10 9 7 12 12 C 1.53275 * 109.31243 * 53.45370 * 11 10 9 13 13 C 1.52931 * 109.61544 * 295.37699 * 12 11 10 14 14 H 1.09002 * 110.50290 * 291.93858 * 13 12 11 15 15 C 1.44192 * 117.75838 * 7.72806 * 9 7 6 16 16 H 1.08996 * 108.69697 * 332.96222 * 15 9 7 17 17 C 1.54064 * 111.76701 * 93.51320 * 15 9 7 18 18 C 1.54061 * 103.73952 * 153.26060 * 17 15 9 19 19 N 1.46880 * 107.70522 * 342.86731 * 18 17 15 20 20 C 1.36947 * 125.57966 * 176.99430 * 19 18 17 21 21 H 1.07997 * 119.99789 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99871 * 0.04086 * 20 19 18 23 23 N 1.31615 * 120.00087 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99845 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47222 * 60.00101 * 24 22 20 26 26 H 1.48495 * 109.47063 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47203 * 299.99975 * 24 22 20 28 28 C 1.37943 * 119.92986 * 180.28456 * 2 1 3 29 29 H 1.09004 * 109.47462 * 89.99589 * 1 2 3 30 30 H 1.09004 * 109.47390 * 210.00057 * 1 2 3 31 31 H 1.09003 * 109.47560 * 329.99566 * 1 2 3 32 32 H 1.08004 * 119.85030 * 0.02562 * 3 2 1 33 33 H 1.07995 * 119.92787 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.07462 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.45974 * 261.15854 * 10 9 7 36 36 H 1.09001 * 109.45916 * 21.12748 * 10 9 7 37 37 H 1.08998 * 109.63344 * 173.49943 * 11 10 9 38 38 H 1.09004 * 109.63252 * 293.90122 * 11 10 9 39 39 H 1.09001 * 110.28941 * 174.84070 * 12 11 10 40 40 H 1.09001 * 108.72146 * 54.93820 * 12 11 10 41 41 H 1.09001 * 110.57535 * 34.69864 * 17 15 9 42 42 H 1.08998 * 110.70116 * 271.88517 * 17 15 9 43 43 H 1.09001 * 109.81002 * 223.31750 * 18 17 15 44 44 H 1.09004 * 109.80738 * 102.41533 * 18 17 15 45 45 H 0.97000 * 120.00313 * 179.97438 * 23 22 20 46 46 H 1.08006 * 120.06765 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.2812 0.0193 -0.0005 6 6 3.5910 -1.1936 -0.0005 7 6 4.3352 -2.4712 -0.0011 8 8 3.8728 -3.4441 0.5621 9 7 5.5262 -2.5571 -0.6261 10 6 6.1367 -3.8750 -0.7453 11 6 6.8016 -4.0095 -2.1173 12 6 7.7627 -2.8350 -2.3321 13 6 6.9717 -1.5271 -2.3831 14 1 6.3552 -1.4886 -3.2812 15 6 6.1094 -1.3387 -1.1305 16 1 5.3085 -0.6327 -1.3499 17 6 7.0777 -0.7050 -0.1135 18 6 8.0631 0.0891 -0.9921 19 7 7.9366 -0.4097 -2.3679 20 6 8.6039 0.0818 -3.4581 21 1 8.4417 -0.3548 -4.4325 22 6 9.4890 1.1410 -3.3106 23 7 9.6865 1.6731 -2.1232 24 14 10.3998 1.8109 -4.7976 25 1 9.4191 2.2998 -5.7999 26 1 11.2773 2.9324 -4.3766 27 1 11.2264 0.7336 -5.3985 28 6 2.1952 -1.1955 -0.0059 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6538 2.1325 0.0004 33 1 4.1135 2.1474 -0.0001 34 1 5.3612 0.0275 -0.0014 35 1 6.8870 -3.9996 0.0355 36 1 5.3695 -4.6417 -0.6372 37 1 7.3558 -4.9469 -2.1653 38 1 6.0396 -3.9942 -2.8966 39 1 8.3128 -2.9625 -3.2645 40 1 8.4654 -2.8012 -1.4996 41 1 7.6026 -1.4775 0.4485 42 1 6.5437 -0.0373 0.5625 43 1 9.0817 -0.0640 -0.6358 44 1 7.8148 1.1500 -0.9595 45 1 10.3053 2.4130 -2.0201 46 1 1.6551 -2.1308 -0.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049313734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:25 Heat of formation + Delta-G solvation = 53.028057 kcal Electronic energy + Delta-G solvation = -27356.665437 eV Core-core repulsion = 23827.075326 eV Total energy + Delta-G solvation = -3529.590110 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.08391 -38.81781 -37.97922 -35.09028 -34.04338 -32.19142 -32.13619 -31.00645 -29.23478 -28.44055 -26.98444 -25.17320 -24.54237 -23.17408 -21.83786 -21.71044 -20.67903 -19.89678 -18.29609 -17.25686 -17.00562 -16.34232 -15.95449 -15.26501 -14.86474 -14.71382 -14.46167 -14.30612 -13.87182 -13.76633 -13.60739 -13.38643 -13.27265 -12.64799 -12.54562 -12.36183 -12.22410 -12.07298 -11.83926 -11.71110 -11.32980 -11.11500 -10.97658 -10.85895 -10.70051 -10.61785 -10.36525 -10.14440 -10.10198 -9.92310 -9.69290 -9.54659 -8.91947 -8.66185 -8.52709 -8.33575 -6.94203 -5.78558 -3.13159 0.99198 1.38628 2.88295 3.17158 3.36558 3.41600 3.42164 3.83192 4.39958 4.56088 4.77289 4.89859 5.01472 5.07653 5.18649 5.23007 5.23601 5.27908 5.36761 5.42119 5.47386 5.49448 5.55895 5.60666 5.68154 5.71354 5.83272 5.93208 6.00545 6.05254 6.10230 6.13560 6.17460 6.28267 6.36094 6.43054 6.45244 6.49926 6.54255 6.71951 6.87564 6.95798 6.97608 7.47654 7.47665 7.55483 7.73321 8.16443 8.30073 9.13672 9.73238 10.37161 11.32494 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.004602 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.684229 B = 6083.422441 C = 7391.998218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.100 4.100 4 C -0.122 4.122 5 C -0.131 4.131 6 C -0.129 4.129 7 C 0.553 3.447 8 O -0.547 6.547 9 N -0.580 5.580 10 C 0.118 3.882 11 C -0.132 4.132 12 C -0.130 4.130 13 C 0.161 3.839 14 H 0.055 0.945 15 C 0.104 3.896 16 H 0.111 0.889 17 C -0.172 4.172 18 C 0.180 3.820 19 N -0.595 5.595 20 C -0.229 4.229 21 H 0.078 0.922 22 C -0.004 4.004 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C -0.068 4.068 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.177 0.823 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.055 0.945 45 H 0.254 0.746 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.913 -4.215 4.184 14.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.118 4.118 4 C -0.140 4.140 5 C -0.148 4.148 6 C -0.132 4.132 7 C 0.343 3.657 8 O -0.426 6.426 9 N -0.310 5.310 10 C -0.004 4.004 11 C -0.171 4.171 12 C -0.170 4.170 13 C 0.053 3.947 14 H 0.073 0.927 15 C 0.000 4.000 16 H 0.128 0.872 17 C -0.210 4.210 18 C 0.055 3.945 19 N -0.320 5.320 20 C -0.357 4.357 21 H 0.096 0.904 22 C -0.200 4.200 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.086 4.086 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.194 0.806 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.926 -4.538 4.408 14.392 hybrid contribution 0.701 0.463 -0.776 1.144 sum -12.226 -4.075 3.632 13.389 Atomic orbital electron populations 1.20762 0.90973 1.02735 1.02319 1.19821 0.96166 0.92878 1.01430 1.21243 0.94483 0.97431 0.98631 1.21210 0.94084 0.98449 1.00257 1.23153 1.04193 0.91534 0.95949 1.19894 0.94195 0.93279 1.05873 1.18503 0.80763 0.87919 0.78552 1.90724 1.68998 1.38605 1.44319 1.46975 1.19790 1.08172 1.56051 1.21313 0.97689 0.83824 0.97599 1.21899 0.99408 0.99590 0.96190 1.22159 0.98014 0.94459 1.02366 1.20892 0.90588 0.89057 0.94171 0.92677 1.22087 0.97139 0.85313 0.95466 0.87218 1.23384 0.98666 1.00279 0.98694 1.21079 0.95239 0.95864 0.82365 1.44477 1.47614 1.35154 1.04707 1.18968 1.17888 1.11996 0.86822 0.90410 1.24773 0.99787 0.98574 0.96913 1.69926 1.39267 1.26982 1.20647 0.86206 0.79465 0.78381 0.81738 1.21134 1.21595 1.21177 1.21015 0.92443 0.98019 0.97166 0.91211 0.91532 0.91540 0.85918 0.85181 0.80649 0.92061 0.89610 0.91076 0.91893 0.91569 0.92076 0.91357 0.90511 0.93843 0.92669 0.93614 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 2 C -0.10 -1.22 5.87 -104.68 -0.61 -1.83 16 3 C -0.10 -1.16 9.69 -39.49 -0.38 -1.54 16 4 C -0.12 -1.59 10.03 -39.64 -0.40 -1.98 16 5 C -0.13 -1.94 7.38 -39.19 -0.29 -2.23 16 6 C -0.13 -2.00 5.45 -104.97 -0.57 -2.57 16 7 C 0.55 9.39 7.35 -12.33 -0.09 9.30 16 8 O -0.55 -10.40 16.07 5.31 0.09 -10.32 16 9 N -0.58 -9.38 2.80 -168.68 -0.47 -9.85 16 10 C 0.12 1.73 6.23 -4.43 -0.03 1.71 16 11 C -0.13 -1.85 6.06 -26.56 -0.16 -2.01 16 12 C -0.13 -2.25 5.40 -26.62 -0.14 -2.39 16 13 C 0.16 3.11 3.24 -67.22 -0.22 2.89 16 14 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 15 C 0.10 1.78 2.23 -68.48 -0.15 1.63 16 16 H 0.11 1.89 4.21 -51.95 -0.22 1.68 16 17 C -0.17 -3.02 5.84 -25.62 -0.15 -3.17 16 18 C 0.18 4.01 5.39 -3.28 -0.02 4.00 16 19 N -0.59 -13.93 2.94 -163.74 -0.48 -14.41 16 20 C -0.23 -5.97 10.27 -15.05 -0.15 -6.12 16 21 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 22 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 23 N -0.92 -25.61 10.29 55.49 0.57 -25.03 16 24 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 C -0.07 -0.93 9.25 -39.19 -0.36 -1.30 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.18 2.71 1.65 -52.49 -0.09 2.63 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.25 7.08 -51.93 -0.37 0.88 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.13 8.09 -51.93 -0.42 0.71 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.08 1.22 5.88 -51.93 -0.31 0.92 16 43 H 0.04 1.09 7.60 -51.93 -0.39 0.70 16 44 H 0.06 1.36 7.25 -51.93 -0.38 0.98 16 45 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.13 1.68 7.97 -52.48 -0.42 1.27 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -29.55 353.30 -10.24 -39.80 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.78 Total: 4.69 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -3.47 Total: -6.43 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.38 Total: -49.30 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.55 -10.24 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049313734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.823 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds