Wall clock time and date at job start Fri Apr 10 2020 23:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38384 * 119.93007 * 2 1 4 4 C 1.38337 * 120.29449 * 180.02562 * 3 2 1 5 5 C 1.37981 * 120.14416 * 359.97438 * 4 3 2 6 6 C 1.39553 * 119.85135 * 0.02562 * 5 4 3 7 7 C 1.47847 * 120.14015 * 179.97438 * 6 5 4 8 8 O 1.21560 * 119.99926 * 147.65131 * 7 6 5 9 9 N 1.34779 * 120.00434 * 327.65351 * 7 6 5 10 10 C 1.45731 * 117.76102 * 187.70437 * 9 7 6 11 11 C 1.53053 * 109.55872 * 141.13287 * 10 9 7 12 12 C 1.53275 * 109.31243 * 53.45370 * 11 10 9 13 13 C 1.52931 * 109.61544 * 295.37699 * 12 11 10 14 14 H 1.09002 * 110.50290 * 291.93858 * 13 12 11 15 15 C 1.44192 * 117.75838 * 7.72806 * 9 7 6 16 16 H 1.08996 * 108.69697 * 332.96222 * 15 9 7 17 17 C 1.54064 * 111.76701 * 93.51320 * 15 9 7 18 18 C 1.54061 * 103.73952 * 153.26060 * 17 15 9 19 19 N 1.46880 * 107.70522 * 342.86731 * 18 17 15 20 20 C 1.36947 * 125.57966 * 176.99430 * 19 18 17 21 21 H 1.07997 * 119.99789 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99871 * 0.04086 * 20 19 18 23 23 N 1.31615 * 120.00087 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99845 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47222 * 60.00101 * 24 22 20 26 26 H 1.48495 * 109.47063 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47203 * 299.99975 * 24 22 20 28 28 C 1.37943 * 119.92986 * 180.28456 * 2 1 3 29 29 H 1.09004 * 109.47462 * 89.99589 * 1 2 3 30 30 H 1.09004 * 109.47390 * 210.00057 * 1 2 3 31 31 H 1.09003 * 109.47560 * 329.99566 * 1 2 3 32 32 H 1.08004 * 119.85030 * 0.02562 * 3 2 1 33 33 H 1.07995 * 119.92787 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.07462 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.45974 * 261.15854 * 10 9 7 36 36 H 1.09001 * 109.45916 * 21.12748 * 10 9 7 37 37 H 1.08998 * 109.63344 * 173.49943 * 11 10 9 38 38 H 1.09004 * 109.63252 * 293.90122 * 11 10 9 39 39 H 1.09001 * 110.28941 * 174.84070 * 12 11 10 40 40 H 1.09001 * 108.72146 * 54.93820 * 12 11 10 41 41 H 1.09001 * 110.57535 * 34.69864 * 17 15 9 42 42 H 1.08998 * 110.70116 * 271.88517 * 17 15 9 43 43 H 1.09001 * 109.81002 * 223.31750 * 18 17 15 44 44 H 1.09004 * 109.80738 * 102.41533 * 18 17 15 45 45 H 0.97000 * 120.00313 * 179.97438 * 23 22 20 46 46 H 1.08006 * 120.06765 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.2812 0.0193 -0.0005 6 6 3.5910 -1.1936 -0.0005 7 6 4.3352 -2.4712 -0.0011 8 8 3.8728 -3.4441 0.5621 9 7 5.5262 -2.5571 -0.6261 10 6 6.1367 -3.8750 -0.7453 11 6 6.8016 -4.0095 -2.1173 12 6 7.7627 -2.8350 -2.3321 13 6 6.9717 -1.5271 -2.3831 14 1 6.3552 -1.4886 -3.2812 15 6 6.1094 -1.3387 -1.1305 16 1 5.3085 -0.6327 -1.3499 17 6 7.0777 -0.7050 -0.1135 18 6 8.0631 0.0891 -0.9921 19 7 7.9366 -0.4097 -2.3679 20 6 8.6039 0.0818 -3.4581 21 1 8.4417 -0.3548 -4.4325 22 6 9.4890 1.1410 -3.3106 23 7 9.6865 1.6731 -2.1232 24 14 10.3998 1.8109 -4.7976 25 1 9.4191 2.2998 -5.7999 26 1 11.2773 2.9324 -4.3766 27 1 11.2264 0.7336 -5.3985 28 6 2.1952 -1.1955 -0.0059 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6538 2.1325 0.0004 33 1 4.1135 2.1474 -0.0001 34 1 5.3612 0.0275 -0.0014 35 1 6.8870 -3.9996 0.0355 36 1 5.3695 -4.6417 -0.6372 37 1 7.3558 -4.9469 -2.1653 38 1 6.0396 -3.9942 -2.8966 39 1 8.3128 -2.9625 -3.2645 40 1 8.4654 -2.8012 -1.4996 41 1 7.6026 -1.4775 0.4485 42 1 6.5437 -0.0373 0.5625 43 1 9.0817 -0.0640 -0.6358 44 1 7.8148 1.1500 -0.9595 45 1 10.3053 2.4130 -2.0201 46 1 1.6551 -2.1308 -0.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049313734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:25 Heat of formation + Delta-G solvation = 38.330936 kcal Electronic energy + Delta-G solvation = -27357.302752 eV Core-core repulsion = 23827.075326 eV Total energy + Delta-G solvation = -3530.227425 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.39502 -40.00063 -39.35568 -36.65838 -35.25988 -33.99652 -33.23122 -32.09035 -30.92981 -29.95664 -27.93115 -26.62020 -26.22553 -24.39251 -23.19122 -22.78877 -22.21091 -21.38495 -19.62943 -18.96735 -18.23529 -17.65748 -17.26517 -16.70906 -16.48022 -15.93973 -15.85228 -15.61912 -15.19008 -15.01746 -14.75823 -14.59622 -14.55344 -14.09650 -14.03499 -13.67650 -13.50590 -13.11482 -12.98686 -12.95791 -12.73464 -12.67995 -12.42035 -12.40324 -12.24296 -12.09588 -11.98523 -11.64847 -11.55170 -11.50870 -11.40071 -10.88596 -10.63124 -9.99599 -9.67703 -9.54306 -8.87702 -7.81658 -5.17199 -0.08439 0.37333 1.49463 1.51033 1.57184 1.64524 1.89343 2.51553 2.77176 3.27992 3.35693 3.61393 3.70505 3.75665 3.88873 3.95391 3.97520 4.05153 4.09504 4.15424 4.31320 4.37335 4.40904 4.52016 4.55788 4.61906 4.66064 4.76108 4.82123 4.86838 4.88871 4.97561 5.00289 5.00852 5.09400 5.27630 5.29099 5.33713 5.43463 5.46356 5.53916 5.56723 5.58440 5.63168 5.76984 5.97529 6.17869 6.25926 6.98782 7.12781 7.78365 8.41690 9.27787 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.004602 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.684229 B = 6083.422441 C = 7391.998218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.094 4.094 4 C -0.129 4.129 5 C -0.145 4.145 6 C -0.150 4.150 7 C 0.553 3.447 8 O -0.571 6.571 9 N -0.579 5.579 10 C 0.114 3.886 11 C -0.118 4.118 12 C -0.122 4.122 13 C 0.156 3.844 14 H 0.052 0.948 15 C 0.122 3.878 16 H 0.113 0.887 17 C -0.155 4.155 18 C 0.192 3.808 19 N -0.612 5.612 20 C -0.236 4.236 21 H 0.081 0.919 22 C -0.058 4.058 23 N -0.948 5.948 24 Si 0.972 3.028 25 H -0.278 1.278 26 H -0.296 1.296 27 H -0.280 1.280 28 C -0.079 4.079 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.164 0.836 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.008 0.992 44 H 0.027 0.973 45 H 0.247 0.753 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.963 -4.454 3.845 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.112 4.112 4 C -0.147 4.147 5 C -0.162 4.162 6 C -0.152 4.152 7 C 0.344 3.656 8 O -0.452 6.452 9 N -0.308 5.308 10 C -0.008 4.008 11 C -0.157 4.157 12 C -0.162 4.162 13 C 0.048 3.952 14 H 0.070 0.930 15 C 0.017 3.983 16 H 0.130 0.870 17 C -0.194 4.194 18 C 0.067 3.933 19 N -0.336 5.336 20 C -0.365 4.365 21 H 0.099 0.901 22 C -0.251 4.251 23 N -0.596 5.596 24 Si 0.801 3.199 25 H -0.204 1.204 26 H -0.223 1.223 27 H -0.207 1.207 28 C -0.098 4.098 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.181 0.819 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.026 0.974 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.995 -4.814 4.057 16.263 hybrid contribution 1.262 0.540 -0.668 1.527 sum -13.732 -4.273 3.389 14.776 Atomic orbital electron populations 1.20841 0.88436 1.03996 1.03399 1.20214 0.97980 0.92113 0.99566 1.21621 0.93980 0.98745 0.96857 1.21444 0.95076 0.98251 0.99901 1.22994 1.03604 0.92165 0.97450 1.19890 0.94949 0.92642 1.07765 1.18771 0.80669 0.88269 0.77928 1.90701 1.69498 1.39610 1.45409 1.46979 1.19769 1.08278 1.55776 1.21456 0.97955 0.83223 0.98120 1.21818 0.98800 0.99148 0.95898 1.21987 0.98076 0.94841 1.01263 1.21084 0.90287 0.88672 0.95129 0.92980 1.21804 0.96639 0.85832 0.94063 0.86985 1.23217 0.97790 1.00132 0.98252 1.20756 0.94508 0.95123 0.82933 1.44678 1.48147 1.36340 1.04472 1.19308 1.17636 1.11718 0.87800 0.90070 1.25510 1.01053 0.99301 0.99263 1.70131 1.39899 1.27310 1.22306 0.85245 0.78234 0.77445 0.78952 1.20384 1.22258 1.20661 1.21182 0.91908 0.99103 0.97576 0.90075 0.91000 0.89648 0.82767 0.84015 0.81938 0.91599 0.89005 0.88293 0.91298 0.92507 0.93538 0.90999 0.88517 0.97425 0.95459 0.94404 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.23 0.71 -0.81 16 2 C -0.10 -2.08 5.87 -19.90 -0.12 -2.19 16 3 C -0.09 -1.91 9.69 22.33 0.22 -1.70 16 4 C -0.13 -3.14 10.03 22.23 0.22 -2.92 16 5 C -0.14 -4.17 7.38 22.53 0.17 -4.01 16 6 C -0.15 -4.51 5.45 -20.09 -0.11 -4.62 16 7 C 0.55 18.41 7.35 86.79 0.64 19.05 16 8 O -0.57 -21.33 16.07 -3.91 -0.06 -21.40 16 9 N -0.58 -18.27 2.80 -805.85 -2.26 -20.53 16 10 C 0.11 3.19 6.23 86.54 0.54 3.73 16 11 C -0.12 -3.09 6.06 30.70 0.19 -2.91 16 12 C -0.12 -4.16 5.40 30.66 0.17 -4.00 16 13 C 0.16 6.00 3.24 44.83 0.15 6.14 16 14 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 15 C 0.12 4.13 2.23 45.86 0.10 4.23 16 16 H 0.11 3.85 4.21 -2.41 -0.01 3.84 16 17 C -0.16 -5.54 5.84 31.31 0.18 -5.35 16 18 C 0.19 8.94 5.39 86.67 0.47 9.40 16 19 N -0.61 -29.33 2.94 -671.97 -1.97 -31.31 16 20 C -0.24 -12.52 10.27 84.03 0.86 -11.65 16 21 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 22 C -0.06 -3.15 5.49 84.86 0.47 -2.69 16 23 N -0.95 -54.48 10.29 21.65 0.22 -54.26 16 24 Si 0.97 44.26 29.55 68.60 2.03 46.29 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 26 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 C -0.08 -2.07 9.25 22.53 0.21 -1.86 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 31 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 32 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.16 5.00 1.65 -2.91 0.00 5.00 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 2.52 7.08 -2.39 -0.02 2.50 16 37 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.05 1.72 8.09 -2.39 -0.02 1.70 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 42 H 0.10 3.09 5.88 -2.39 -0.01 3.08 16 43 H 0.01 0.40 7.60 -2.39 -0.02 0.38 16 44 H 0.03 1.40 7.25 -2.39 -0.02 1.39 16 45 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.13 3.26 7.97 -2.91 -0.02 3.24 16 Total: -1.00 -65.09 353.30 4.00 -61.09 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.98 Total: 22.25 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 5.06 Total: -2.14 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -4.01 Total: -106.09 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.06 Total: -21.40 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -65.09 4.00 -61.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049313734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.425 kcal (2) G-P(sol) polarization free energy of solvation -65.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds