Wall clock time and date at job start Fri Apr 10 2020 23:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38379 * 119.92456 * 2 1 4 4 C 1.38341 * 120.28799 * 180.02562 * 3 2 1 5 5 C 1.37980 * 120.14441 * 359.97438 * 4 3 2 6 6 C 1.39545 * 119.85474 * 0.02562 * 5 4 3 7 7 C 1.47849 * 120.14627 * 179.97438 * 6 5 4 8 8 O 1.21547 * 120.00391 * 211.71323 * 7 6 5 9 9 N 1.34782 * 119.99491 * 31.71743 * 7 6 5 10 10 C 1.45736 * 117.75359 * 172.19433 * 9 7 6 11 11 C 1.52731 * 109.73125 * 218.79017 * 10 9 7 12 12 C 1.52944 * 108.59116 * 306.46677 * 11 10 9 13 13 C 1.52924 * 109.79381 * 65.86063 * 12 11 10 14 14 H 1.08995 * 111.26830 * 66.64759 * 13 12 11 15 15 C 1.44188 * 117.75933 * 352.45007 * 9 7 6 16 16 H 1.08995 * 109.22290 * 27.38071 * 15 9 7 17 17 C 1.54057 * 111.76648 * 266.47680 * 15 9 7 18 18 C 1.54052 * 103.74660 * 206.75439 * 17 15 9 19 19 N 1.46881 * 107.71033 * 17.12691 * 18 17 15 20 20 C 1.36934 * 125.58566 * 182.96146 * 19 18 17 21 21 H 1.08004 * 120.00576 * 179.97438 * 20 19 18 22 22 C 1.38820 * 119.99835 * 359.97438 * 20 19 18 23 23 N 1.31614 * 119.99899 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99829 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47347 * 89.99760 * 24 22 20 26 26 H 1.48500 * 109.46837 * 210.00153 * 24 22 20 27 27 H 1.48503 * 109.46996 * 329.99651 * 24 22 20 28 28 C 1.37932 * 119.92570 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46910 * 270.00365 * 1 2 3 30 30 H 1.08997 * 109.46833 * 29.99966 * 1 2 3 31 31 H 1.08989 * 109.47172 * 150.00536 * 1 2 3 32 32 H 1.07995 * 119.85983 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.92532 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.06767 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.46044 * 338.92961 * 10 9 7 36 36 H 1.09001 * 109.45935 * 98.88274 * 10 9 7 37 37 H 1.08995 * 109.69571 * 186.67043 * 11 10 9 38 38 H 1.08999 * 109.63518 * 66.23113 * 11 10 9 39 39 H 1.09005 * 109.41836 * 305.75906 * 12 11 10 40 40 H 1.08997 * 109.41755 * 185.95739 * 12 11 10 41 41 H 1.09006 * 110.57518 * 325.32168 * 17 15 9 42 42 H 1.09000 * 110.57177 * 88.04144 * 17 15 9 43 43 H 1.09007 * 109.81204 * 136.67809 * 18 17 15 44 44 H 1.08996 * 109.81424 * 257.57300 * 18 17 15 45 45 H 0.97001 * 120.00103 * 180.02562 * 23 22 20 46 46 H 1.08001 * 120.07670 * 0.27944 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0005 5 6 4.2812 0.0193 -0.0005 6 6 3.5912 -1.1936 -0.0005 7 6 4.3352 -2.4712 -0.0011 8 8 3.8671 -3.4469 -0.5545 9 7 5.5326 -2.5539 0.6121 10 6 6.1433 -3.8715 0.7337 11 6 6.8237 -4.0008 2.0950 12 6 7.7844 -2.8242 2.2736 13 6 6.9938 -1.5175 2.3523 14 1 6.3861 -1.4770 3.2562 15 6 6.1190 -1.3334 1.1077 16 1 5.3258 -0.6236 1.3422 17 6 7.0762 -0.7009 0.0797 18 6 8.0694 0.0965 0.9464 19 7 7.9575 -0.3990 2.3246 20 6 8.6356 0.0954 3.4066 21 1 8.4837 -0.3389 4.3837 22 6 9.5185 1.1548 3.2476 23 7 9.7040 1.6837 2.0568 24 14 10.4441 1.8287 4.7235 25 1 11.7310 1.1032 4.8742 26 1 10.7120 3.2753 4.5214 27 1 9.6251 1.6434 5.9483 28 6 2.1952 -1.1954 0.0005 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5137 32 1 1.6539 2.1325 -0.0004 33 1 4.1136 2.1475 -0.0001 34 1 5.3612 0.0276 -0.0014 35 1 5.3745 -4.6383 0.6378 36 1 6.8859 -4.0017 -0.0535 37 1 7.3794 -4.9374 2.1404 38 1 6.0716 -3.9825 2.8836 39 1 8.4688 -2.7832 1.4261 40 1 8.3549 -2.9585 3.1926 41 1 7.5964 -1.4741 -0.4858 42 1 6.5323 -0.0371 -0.5923 43 1 9.0847 -0.0563 0.5802 44 1 7.8197 1.1569 0.9136 45 1 10.3211 2.4238 1.9456 46 1 1.6552 -2.1308 -0.0036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049313737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:27 Heat of formation + Delta-G solvation = 53.683847 kcal Electronic energy + Delta-G solvation = -27361.940245 eV Core-core repulsion = 23832.378572 eV Total energy + Delta-G solvation = -3529.561673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09699 -38.82925 -37.98882 -35.10722 -34.06172 -32.19351 -32.14073 -31.00179 -29.24304 -28.44034 -26.98405 -25.17049 -24.54440 -23.17209 -21.83566 -21.70095 -20.68709 -19.90823 -18.31013 -17.25480 -17.00354 -16.33833 -15.95760 -15.25901 -14.87118 -14.71841 -14.46502 -14.30266 -13.87577 -13.76436 -13.61103 -13.39280 -13.26854 -12.64719 -12.55330 -12.35893 -12.22082 -12.08281 -11.83822 -11.71534 -11.32900 -11.10739 -10.98226 -10.86724 -10.71742 -10.62341 -10.33798 -10.14491 -10.08049 -9.92854 -9.70077 -9.53611 -8.91787 -8.66736 -8.52527 -8.33688 -6.94559 -5.78972 -3.13461 0.99107 1.38871 2.88736 3.17121 3.35852 3.41646 3.42880 3.83643 4.39702 4.56035 4.77354 4.90047 5.00539 5.08051 5.19295 5.23114 5.24292 5.27549 5.37023 5.42761 5.47348 5.49332 5.56203 5.60744 5.68291 5.71425 5.83554 5.93397 6.00471 6.05397 6.09587 6.13640 6.17311 6.27474 6.36013 6.43177 6.45498 6.50022 6.54329 6.71565 6.87474 6.96006 6.97742 7.47461 7.47693 7.55703 7.73343 8.16013 8.30280 9.13380 9.72914 10.36823 11.32169 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.004600 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.948684 B = 6084.858632 C = 7396.814628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.100 4.100 4 C -0.122 4.122 5 C -0.132 4.132 6 C -0.130 4.130 7 C 0.554 3.446 8 O -0.547 6.547 9 N -0.579 5.579 10 C 0.117 3.883 11 C -0.132 4.132 12 C -0.130 4.130 13 C 0.161 3.839 14 H 0.057 0.943 15 C 0.102 3.898 16 H 0.111 0.889 17 C -0.171 4.171 18 C 0.179 3.821 19 N -0.595 5.595 20 C -0.228 4.228 21 H 0.079 0.921 22 C -0.004 4.004 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C -0.067 4.067 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.178 0.822 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.055 0.945 45 H 0.253 0.747 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.974 -4.248 -4.050 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.118 4.118 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.133 4.133 7 C 0.343 3.657 8 O -0.427 6.427 9 N -0.309 5.309 10 C -0.005 4.005 11 C -0.171 4.171 12 C -0.171 4.171 13 C 0.053 3.947 14 H 0.075 0.925 15 C -0.002 4.002 16 H 0.128 0.872 17 C -0.210 4.210 18 C 0.054 3.946 19 N -0.320 5.320 20 C -0.356 4.356 21 H 0.096 0.904 22 C -0.201 4.201 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.086 4.086 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.194 0.806 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.998 -4.573 -4.268 14.424 hybrid contribution 0.718 0.465 0.758 1.143 sum -12.280 -4.107 -3.510 13.416 Atomic orbital electron populations 1.20763 0.90976 1.02729 1.02317 1.19820 0.96166 0.92880 1.01455 1.21243 0.94488 0.97427 0.98622 1.21216 0.94081 0.98457 1.00270 1.23187 1.04252 0.91536 0.95914 1.19897 0.94190 0.93280 1.05897 1.18496 0.80780 0.87948 0.78496 1.90719 1.68975 1.38415 1.44542 1.46951 1.19319 1.08057 1.56588 1.21257 0.97681 0.83805 0.97723 1.21803 0.99328 0.99595 0.96345 1.22107 0.98046 0.94474 1.02434 1.20923 0.90506 0.89025 0.94273 0.92494 1.22086 0.97182 0.85332 0.95613 0.87207 1.23381 0.98680 1.00299 0.98631 1.21076 0.95186 0.95860 0.82439 1.44486 1.47478 1.35107 1.04881 1.19015 1.17617 1.11894 0.87074 0.90351 1.24777 0.99811 0.98590 0.96909 1.69938 1.39397 1.27075 1.20396 0.86129 0.79854 0.78156 0.81671 1.21615 1.21661 1.20666 1.21018 0.92455 0.98019 0.97138 0.91215 0.91544 0.91535 0.85924 0.85183 0.80559 0.89663 0.92083 0.91030 0.91806 0.91914 0.91775 0.91349 0.90507 0.93827 0.92667 0.93667 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 2 C -0.10 -1.22 5.87 -104.68 -0.61 -1.84 16 3 C -0.10 -1.16 9.69 -39.49 -0.38 -1.54 16 4 C -0.12 -1.59 10.03 -39.64 -0.40 -1.99 16 5 C -0.13 -1.95 7.39 -39.19 -0.29 -2.24 16 6 C -0.13 -2.01 5.47 -104.97 -0.57 -2.58 16 7 C 0.55 9.40 7.35 -12.33 -0.09 9.31 16 8 O -0.55 -10.40 16.05 5.32 0.09 -10.31 16 9 N -0.58 -9.36 2.80 -168.88 -0.47 -9.84 16 10 C 0.12 1.73 6.18 -4.59 -0.03 1.70 16 11 C -0.13 -1.85 6.09 -26.90 -0.16 -2.01 16 12 C -0.13 -2.26 5.31 -26.80 -0.14 -2.40 16 13 C 0.16 3.10 3.29 -67.21 -0.22 2.87 16 14 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 15 C 0.10 1.75 2.19 -68.49 -0.15 1.60 16 16 H 0.11 1.90 4.25 -51.94 -0.22 1.67 16 17 C -0.17 -3.01 5.77 -25.63 -0.15 -3.16 16 18 C 0.18 4.01 5.39 -3.29 -0.02 3.99 16 19 N -0.59 -13.91 2.94 -163.74 -0.48 -14.39 16 20 C -0.23 -5.94 10.27 -15.06 -0.15 -6.10 16 21 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 22 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 23 N -0.92 -25.60 10.29 55.49 0.57 -25.02 16 24 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C -0.07 -0.93 9.25 -39.19 -0.36 -1.30 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.18 2.73 1.60 -52.48 -0.08 2.64 16 35 H 0.09 1.24 7.08 -51.93 -0.37 0.88 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.16 8.02 -51.93 -0.42 0.74 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.08 1.22 5.90 -51.93 -0.31 0.92 16 43 H 0.04 1.09 7.60 -51.93 -0.39 0.70 16 44 H 0.06 1.35 7.25 -51.93 -0.38 0.98 16 45 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.13 1.69 7.95 -52.49 -0.42 1.27 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -29.55 353.06 -10.25 -39.80 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.77 Total: 4.70 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.47 Total: -6.49 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.38 Total: -49.25 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.55 -10.25 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049313737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.483 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds