Wall clock time and date at job start Fri Apr 10 2020 23:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38379 * 119.92456 * 2 1 4 4 C 1.38341 * 120.28799 * 180.02562 * 3 2 1 5 5 C 1.37980 * 120.14441 * 359.97438 * 4 3 2 6 6 C 1.39545 * 119.85474 * 0.02562 * 5 4 3 7 7 C 1.47849 * 120.14627 * 179.97438 * 6 5 4 8 8 O 1.21547 * 120.00391 * 211.71323 * 7 6 5 9 9 N 1.34782 * 119.99491 * 31.71743 * 7 6 5 10 10 C 1.45736 * 117.75359 * 172.19433 * 9 7 6 11 11 C 1.52731 * 109.73125 * 218.79017 * 10 9 7 12 12 C 1.52944 * 108.59116 * 306.46677 * 11 10 9 13 13 C 1.52924 * 109.79381 * 65.86063 * 12 11 10 14 14 H 1.08995 * 111.26830 * 66.64759 * 13 12 11 15 15 C 1.44188 * 117.75933 * 352.45007 * 9 7 6 16 16 H 1.08995 * 109.22290 * 27.38071 * 15 9 7 17 17 C 1.54057 * 111.76648 * 266.47680 * 15 9 7 18 18 C 1.54052 * 103.74660 * 206.75439 * 17 15 9 19 19 N 1.46881 * 107.71033 * 17.12691 * 18 17 15 20 20 C 1.36934 * 125.58566 * 182.96146 * 19 18 17 21 21 H 1.08004 * 120.00576 * 179.97438 * 20 19 18 22 22 C 1.38820 * 119.99835 * 359.97438 * 20 19 18 23 23 N 1.31614 * 119.99899 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99829 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47347 * 89.99760 * 24 22 20 26 26 H 1.48500 * 109.46837 * 210.00153 * 24 22 20 27 27 H 1.48503 * 109.46996 * 329.99651 * 24 22 20 28 28 C 1.37932 * 119.92570 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46910 * 270.00365 * 1 2 3 30 30 H 1.08997 * 109.46833 * 29.99966 * 1 2 3 31 31 H 1.08989 * 109.47172 * 150.00536 * 1 2 3 32 32 H 1.07995 * 119.85983 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.92532 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.06767 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.46044 * 338.92961 * 10 9 7 36 36 H 1.09001 * 109.45935 * 98.88274 * 10 9 7 37 37 H 1.08995 * 109.69571 * 186.67043 * 11 10 9 38 38 H 1.08999 * 109.63518 * 66.23113 * 11 10 9 39 39 H 1.09005 * 109.41836 * 305.75906 * 12 11 10 40 40 H 1.08997 * 109.41755 * 185.95739 * 12 11 10 41 41 H 1.09006 * 110.57518 * 325.32168 * 17 15 9 42 42 H 1.09000 * 110.57177 * 88.04144 * 17 15 9 43 43 H 1.09007 * 109.81204 * 136.67809 * 18 17 15 44 44 H 1.08996 * 109.81424 * 257.57300 * 18 17 15 45 45 H 0.97001 * 120.00103 * 180.02562 * 23 22 20 46 46 H 1.08001 * 120.07670 * 0.27944 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0005 5 6 4.2812 0.0193 -0.0005 6 6 3.5912 -1.1936 -0.0005 7 6 4.3352 -2.4712 -0.0011 8 8 3.8671 -3.4469 -0.5545 9 7 5.5326 -2.5539 0.6121 10 6 6.1433 -3.8715 0.7337 11 6 6.8237 -4.0008 2.0950 12 6 7.7844 -2.8242 2.2736 13 6 6.9938 -1.5175 2.3523 14 1 6.3861 -1.4770 3.2562 15 6 6.1190 -1.3334 1.1077 16 1 5.3258 -0.6236 1.3422 17 6 7.0762 -0.7009 0.0797 18 6 8.0694 0.0965 0.9464 19 7 7.9575 -0.3990 2.3246 20 6 8.6356 0.0954 3.4066 21 1 8.4837 -0.3389 4.3837 22 6 9.5185 1.1548 3.2476 23 7 9.7040 1.6837 2.0568 24 14 10.4441 1.8287 4.7235 25 1 11.7310 1.1032 4.8742 26 1 10.7120 3.2753 4.5214 27 1 9.6251 1.6434 5.9483 28 6 2.1952 -1.1954 0.0005 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5137 32 1 1.6539 2.1325 -0.0004 33 1 4.1136 2.1475 -0.0001 34 1 5.3612 0.0276 -0.0014 35 1 5.3745 -4.6383 0.6378 36 1 6.8859 -4.0017 -0.0535 37 1 7.3794 -4.9374 2.1404 38 1 6.0716 -3.9825 2.8836 39 1 8.4688 -2.7832 1.4261 40 1 8.3549 -2.9585 3.1926 41 1 7.5964 -1.4741 -0.4858 42 1 6.5323 -0.0371 -0.5923 43 1 9.0847 -0.0563 0.5802 44 1 7.8197 1.1569 0.9136 45 1 10.3211 2.4238 1.9456 46 1 1.6552 -2.1308 -0.0036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049313737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:27 Heat of formation + Delta-G solvation = 38.976854 kcal Electronic energy + Delta-G solvation = -27362.577988 eV Core-core repulsion = 23832.378572 eV Total energy + Delta-G solvation = -3530.199416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.40916 -40.01329 -39.35990 -36.67234 -35.28160 -33.99908 -33.22998 -32.08505 -30.93821 -29.95737 -27.93187 -26.61825 -26.22280 -24.39029 -23.18340 -22.78347 -22.21555 -21.39800 -19.64309 -18.96439 -18.23112 -17.65447 -17.26743 -16.71121 -16.47820 -15.94150 -15.85239 -15.61685 -15.18931 -15.02166 -14.76363 -14.58943 -14.55338 -14.10141 -14.04125 -13.68249 -13.50249 -13.11473 -12.98911 -12.95154 -12.76094 -12.68509 -12.42988 -12.39617 -12.24245 -12.04750 -11.98853 -11.66523 -11.53442 -11.50424 -11.40042 -10.87759 -10.63848 -9.99552 -9.67540 -9.54318 -8.87935 -7.81983 -5.17382 -0.08585 0.37534 1.49506 1.49613 1.58257 1.65060 1.89428 2.51282 2.77507 3.27976 3.35465 3.61116 3.70277 3.76102 3.89068 3.95700 3.97835 4.06813 4.09685 4.15783 4.30842 4.37455 4.41114 4.52700 4.55943 4.61534 4.66180 4.76116 4.82213 4.86838 4.88955 4.97464 4.99984 5.00738 5.10089 5.27656 5.29073 5.33808 5.43747 5.46490 5.54151 5.56977 5.58597 5.63170 5.77042 5.97662 6.17884 6.26076 6.99066 7.12681 7.78135 8.41472 9.27702 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.004600 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.948684 B = 6084.858632 C = 7396.814628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.094 4.094 4 C -0.129 4.129 5 C -0.145 4.145 6 C -0.150 4.150 7 C 0.553 3.447 8 O -0.571 6.571 9 N -0.578 5.578 10 C 0.114 3.886 11 C -0.118 4.118 12 C -0.122 4.122 13 C 0.155 3.845 14 H 0.054 0.946 15 C 0.120 3.880 16 H 0.113 0.887 17 C -0.155 4.155 18 C 0.192 3.808 19 N -0.612 5.612 20 C -0.234 4.234 21 H 0.082 0.918 22 C -0.058 4.058 23 N -0.948 5.948 24 Si 0.972 3.028 25 H -0.290 1.290 26 H -0.296 1.296 27 H -0.270 1.270 28 C -0.079 4.079 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.165 0.835 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.008 0.992 44 H 0.027 0.973 45 H 0.246 0.754 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.038 -4.494 -3.687 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.112 4.112 4 C -0.147 4.147 5 C -0.163 4.163 6 C -0.153 4.153 7 C 0.344 3.656 8 O -0.452 6.452 9 N -0.307 5.307 10 C -0.008 4.008 11 C -0.157 4.157 12 C -0.162 4.162 13 C 0.048 3.952 14 H 0.072 0.928 15 C 0.015 3.985 16 H 0.130 0.870 17 C -0.194 4.194 18 C 0.067 3.933 19 N -0.336 5.336 20 C -0.363 4.363 21 H 0.100 0.900 22 C -0.252 4.252 23 N -0.597 5.597 24 Si 0.801 3.199 25 H -0.217 1.217 26 H -0.222 1.222 27 H -0.195 1.195 28 C -0.098 4.098 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.181 0.819 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.026 0.974 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.080 -4.855 -3.892 16.313 hybrid contribution 1.286 0.544 0.641 1.536 sum -13.795 -4.311 -3.251 14.814 Atomic orbital electron populations 1.20841 0.88438 1.03989 1.03399 1.20213 0.97981 0.92115 0.99591 1.21620 0.93983 0.98741 0.96845 1.21448 0.95074 0.98255 0.99920 1.23026 1.03659 0.92166 0.97411 1.19892 0.94942 0.92644 1.07783 1.18765 0.80695 0.88298 0.77874 1.90697 1.69471 1.39418 1.45641 1.46957 1.19295 1.08166 1.56313 1.21399 0.97942 0.83196 0.98258 1.21725 0.98709 0.99154 0.96066 1.21934 0.98121 0.94854 1.01310 1.21113 0.90229 0.88635 0.95225 0.92765 1.21801 0.96659 0.85840 0.94210 0.86992 1.23212 0.97788 1.00134 0.98227 1.20751 0.94479 0.95126 0.82965 1.44685 1.47994 1.36297 1.04652 1.19345 1.17354 1.11595 0.88023 0.90042 1.25510 1.01113 0.99336 0.99211 1.70138 1.40061 1.27421 1.22051 0.85172 0.78546 0.76894 0.79274 1.21708 1.22221 1.19481 1.21184 0.91921 0.99097 0.97552 0.90075 0.89653 0.91005 0.82774 0.84027 0.81855 0.89075 0.91628 0.88241 0.91195 0.93365 0.92716 0.90995 0.88527 0.97416 0.95458 0.94414 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.24 0.71 -0.81 16 2 C -0.10 -2.08 5.87 -19.90 -0.12 -2.20 16 3 C -0.09 -1.91 9.69 22.33 0.22 -1.69 16 4 C -0.13 -3.15 10.03 22.23 0.22 -2.92 16 5 C -0.15 -4.19 7.39 22.52 0.17 -4.02 16 6 C -0.15 -4.51 5.47 -20.09 -0.11 -4.62 16 7 C 0.55 18.41 7.35 86.79 0.64 19.05 16 8 O -0.57 -21.33 16.05 -3.86 -0.06 -21.39 16 9 N -0.58 -18.23 2.80 -806.48 -2.26 -20.49 16 10 C 0.11 3.17 6.18 86.43 0.53 3.71 16 11 C -0.12 -3.08 6.09 30.49 0.19 -2.89 16 12 C -0.12 -4.17 5.31 30.55 0.16 -4.01 16 13 C 0.16 5.97 3.29 44.82 0.15 6.12 16 14 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 15 C 0.12 4.07 2.19 45.86 0.10 4.17 16 16 H 0.11 3.85 4.25 -2.40 -0.01 3.84 16 17 C -0.16 -5.52 5.77 31.31 0.18 -5.34 16 18 C 0.19 8.92 5.39 86.66 0.47 9.39 16 19 N -0.61 -29.28 2.94 -671.96 -1.97 -31.25 16 20 C -0.23 -12.42 10.27 84.04 0.86 -11.56 16 21 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 22 C -0.06 -3.18 5.49 84.86 0.47 -2.71 16 23 N -0.95 -54.48 10.29 21.65 0.22 -54.26 16 24 Si 0.97 44.28 29.55 68.60 2.03 46.31 16 25 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 26 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C -0.08 -2.07 9.25 22.53 0.21 -1.86 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 31 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 32 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.17 5.03 1.60 -2.91 0.00 5.03 16 35 H 0.09 2.50 7.08 -2.39 -0.02 2.48 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 1.78 8.02 -2.38 -0.02 1.76 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 41 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 42 H 0.10 3.09 5.90 -2.39 -0.01 3.07 16 43 H 0.01 0.40 7.60 -2.38 -0.02 0.39 16 44 H 0.03 1.40 7.25 -2.39 -0.02 1.39 16 45 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 46 H 0.13 3.27 7.95 -2.91 -0.02 3.25 16 Total: -1.00 -65.09 353.06 3.98 -61.11 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.98 Total: 22.19 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 5.04 Total: -2.21 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -4.01 Total: -106.00 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.06 Total: -21.39 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -65.09 3.98 -61.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049313737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.083 kcal (2) G-P(sol) polarization free energy of solvation -65.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds