Wall clock time and date at job start Fri Apr 10 2020 23:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38349 * 119.85249 * 2 1 4 4 C 1.37963 * 120.14653 * 179.97438 * 3 2 1 5 5 C 1.39575 * 119.84777 * 0.02562 * 4 3 2 6 6 C 1.47850 * 120.14311 * 179.97438 * 5 4 3 7 7 O 1.21555 * 119.99847 * 328.03229 * 6 5 4 8 8 N 1.34776 * 119.99669 * 148.02379 * 6 5 4 9 9 C 1.45092 * 117.58492 * 188.11027 * 8 6 5 10 10 C 1.53053 * 109.56336 * 140.95021 * 9 8 6 11 11 C 1.52944 * 108.49408 * 53.69171 * 10 9 8 12 12 C 1.52926 * 109.79845 * 294.00943 * 11 10 9 13 13 H 1.08998 * 111.26266 * 293.35313 * 12 11 10 14 14 C 1.44188 * 117.76258 * 7.73674 * 8 6 5 15 15 H 1.08996 * 108.69702 * 332.97857 * 14 8 6 16 16 C 1.54066 * 111.76375 * 93.52923 * 14 8 6 17 17 C 1.54063 * 103.74171 * 153.25710 * 16 14 8 18 18 N 1.46883 * 107.70642 * 342.86523 * 17 16 14 19 19 C 1.36932 * 125.58019 * 176.99941 * 18 17 16 20 20 H 1.08006 * 120.00054 * 179.74700 * 19 18 17 21 21 C 1.38808 * 120.00170 * 0.02562 * 19 18 17 22 22 N 1.31618 * 119.99879 * 359.72179 * 21 19 18 23 23 Si 1.86801 * 120.00078 * 179.72405 * 21 19 18 24 24 H 1.48492 * 109.47392 * 59.99938 * 23 21 19 25 25 H 1.48506 * 109.46857 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47123 * 299.99733 * 23 21 19 27 27 C 1.39573 * 119.71251 * 0.25416 * 5 4 3 28 28 C 1.37961 * 119.85527 * 359.47116 * 27 5 4 29 29 H 1.09004 * 109.47060 * 90.00275 * 1 2 3 30 30 H 1.08999 * 109.47569 * 209.99796 * 1 2 3 31 31 H 1.09002 * 109.47164 * 330.00622 * 1 2 3 32 32 H 1.08010 * 119.93204 * 359.97438 * 3 2 1 33 33 H 1.07992 * 120.07567 * 180.02562 * 4 3 2 34 34 H 1.08993 * 109.54873 * 20.86186 * 9 8 6 35 35 H 1.08997 * 109.33739 * 260.90900 * 9 8 6 36 36 H 1.08998 * 109.63729 * 293.99293 * 10 9 8 37 37 H 1.08999 * 109.63019 * 173.38859 * 10 9 8 38 38 H 1.08997 * 109.41853 * 173.90637 * 11 10 9 39 39 H 1.09004 * 109.36061 * 54.07335 * 11 10 9 40 40 H 1.08991 * 110.57505 * 34.69358 * 16 14 8 41 41 H 1.08999 * 110.56919 * 271.81542 * 16 14 8 42 42 H 1.08992 * 109.81059 * 223.31464 * 17 16 14 43 43 H 1.09003 * 109.86460 * 102.44024 * 17 16 14 44 44 H 0.97002 * 119.99944 * 179.97438 * 22 21 19 45 45 H 1.08000 * 120.07308 * 179.72585 * 27 5 4 46 46 H 1.07996 * 119.93298 * 180.27517 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5753 1.2070 0.0005 5 6 4.2762 0.0000 0.0005 6 6 5.7547 -0.0001 0.0005 7 8 6.3624 0.8930 -0.5568 8 7 6.4285 -0.9902 0.6187 9 6 7.8670 -0.8478 0.7436 10 6 8.3157 -1.3613 2.1138 11 6 7.7885 -2.7856 2.2946 12 6 6.2610 -2.7675 2.3650 13 1 5.9127 -2.2613 3.2652 14 6 5.6693 -2.1107 1.1157 15 1 4.6561 -1.7756 1.3374 16 6 5.6092 -3.2596 0.0910 17 6 5.4192 -4.5167 0.9613 18 7 5.7866 -4.1656 2.3394 19 6 5.6981 -4.9968 3.4239 20 1 5.9980 -4.6449 4.4000 21 6 5.2284 -6.2937 3.2679 22 7 4.8629 -6.7226 2.0785 23 14 5.1148 -7.4301 4.7461 24 1 4.2030 -6.8375 5.7573 25 1 4.5874 -8.7501 4.3163 26 1 6.4645 -7.6064 5.3398 27 6 3.5753 -1.2070 -0.0054 28 6 2.1957 -1.2000 -0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 1.6521 2.1333 -0.0004 33 1 4.1117 2.1443 0.0010 34 1 8.1396 0.2026 0.6424 35 1 8.3564 -1.4271 -0.0393 36 1 7.9111 -0.7191 2.8961 37 1 9.4045 -1.3645 2.1651 38 1 8.1888 -3.2058 3.2172 39 1 8.1052 -3.3980 1.4503 40 1 6.5408 -3.3204 -0.4714 41 1 4.7620 -3.1284 -0.5822 42 1 6.0643 -5.3173 0.5995 43 1 4.3780 -4.8371 0.9268 44 1 4.5350 -7.6290 1.9694 45 1 4.1117 -2.1443 -0.0099 46 1 1.6521 -2.1332 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049863730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:34 Heat of formation + Delta-G solvation = 53.360503 kcal Electronic energy + Delta-G solvation = -27380.717453 eV Core-core repulsion = 23851.141758 eV Total energy + Delta-G solvation = -3529.575694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11419 -38.83161 -38.00545 -35.12427 -33.96380 -32.29803 -32.17457 -30.82947 -29.20145 -28.54800 -27.34846 -24.86400 -24.47604 -22.79170 -22.20906 -21.64526 -20.70564 -19.96187 -18.44043 -17.29670 -17.07171 -16.07187 -15.97882 -15.25016 -14.82737 -14.76517 -14.38190 -14.32602 -13.86120 -13.76342 -13.55572 -13.45022 -13.28446 -12.73136 -12.55215 -12.31940 -12.22683 -12.07688 -11.83232 -11.70826 -11.34181 -11.10800 -10.97738 -10.85089 -10.71311 -10.61495 -10.34637 -10.14848 -10.09051 -9.93126 -9.69599 -9.54963 -8.84781 -8.66256 -8.58148 -8.32280 -6.94416 -5.78671 -3.13256 0.97179 1.42220 2.88145 3.19576 3.36485 3.41545 3.42060 3.84037 4.40279 4.57735 4.81047 4.86140 5.00068 5.02038 5.19390 5.23310 5.26102 5.28292 5.39163 5.43298 5.47973 5.49295 5.55691 5.64784 5.68228 5.72411 5.84474 5.97749 6.01513 6.04005 6.10103 6.13703 6.17767 6.27693 6.37179 6.38521 6.44025 6.49444 6.58093 6.72100 6.89220 6.96405 6.98062 7.47339 7.47844 7.56037 7.73318 8.16416 8.31395 9.13595 9.73122 10.37064 11.32410 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.004971 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.101515 B = 5630.944228 C = 7289.023873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.136 4.136 4 C -0.063 4.063 5 C -0.140 4.140 6 C 0.553 3.447 7 O -0.548 6.548 8 N -0.579 5.579 9 C 0.116 3.884 10 C -0.132 4.132 11 C -0.130 4.130 12 C 0.162 3.838 13 H 0.057 0.943 14 C 0.103 3.897 15 H 0.110 0.890 16 C -0.171 4.171 17 C 0.179 3.821 18 N -0.594 5.594 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C -0.121 4.121 28 C -0.127 4.127 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.254 0.746 45 H 0.178 0.822 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.421 12.475 -4.132 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.154 4.154 4 C -0.082 4.082 5 C -0.143 4.143 6 C 0.343 3.657 7 O -0.427 6.427 8 N -0.309 5.309 9 C -0.006 4.006 10 C -0.171 4.171 11 C -0.171 4.171 12 C 0.053 3.947 13 H 0.075 0.925 14 C -0.001 4.001 15 H 0.127 0.873 16 C -0.210 4.210 17 C 0.054 3.946 18 N -0.319 5.319 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.138 4.138 28 C -0.145 4.145 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.194 0.806 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.148 12.642 -4.357 13.737 hybrid contribution -0.008 -0.770 0.759 1.081 sum -3.156 11.872 -3.598 12.800 Atomic orbital electron populations 1.20852 0.91131 1.03009 1.02416 1.20152 0.96204 0.93289 0.97021 1.20930 0.93755 0.97632 1.03062 1.21130 0.93884 0.97163 0.95978 1.19895 0.92933 0.94607 1.06871 1.18509 0.87341 0.81370 0.78497 1.90721 1.69962 1.37557 1.44454 1.46804 1.07513 1.20132 1.56419 1.21216 0.79627 1.02138 0.97626 1.21868 1.00565 0.98363 0.96266 1.22109 0.98197 0.94342 1.02414 1.20870 0.92211 0.87397 0.94213 0.92494 1.22058 0.96599 0.85855 0.95617 0.87298 1.23382 1.01335 0.97609 0.98659 1.21081 1.00607 0.90477 0.82402 1.44471 1.75734 1.06955 1.04740 1.18966 1.37307 0.92343 0.87014 0.90405 1.24773 1.01147 0.97242 0.96908 1.69928 1.49146 1.17287 1.20511 0.86206 0.77806 0.80106 0.81672 1.21129 1.21592 1.21176 1.23155 0.95386 1.00226 0.95065 1.21107 0.94074 0.97843 1.01504 0.90991 0.91153 0.91514 0.85753 0.85381 0.89655 0.92151 0.91791 0.91066 0.91783 0.91923 0.91319 0.90531 0.93856 0.92646 0.93607 0.80601 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.00 36.01 0.36 -0.66 16 2 C -0.07 -0.78 5.89 -104.53 -0.62 -1.39 16 3 C -0.14 -1.59 9.68 -39.64 -0.38 -1.97 16 4 C -0.06 -0.86 9.60 -39.18 -0.38 -1.23 16 5 C -0.14 -2.16 5.45 -104.97 -0.57 -2.73 16 6 C 0.55 9.40 7.34 -12.33 -0.09 9.31 16 7 O -0.55 -10.42 16.04 5.32 0.09 -10.33 16 8 N -0.58 -9.37 2.78 -169.30 -0.47 -9.84 16 9 C 0.12 1.72 6.17 -4.77 -0.03 1.69 16 10 C -0.13 -1.85 6.10 -26.73 -0.16 -2.02 16 11 C -0.13 -2.26 5.31 -26.80 -0.14 -2.40 16 12 C 0.16 3.11 3.29 -67.32 -0.22 2.89 16 13 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 14 C 0.10 1.76 2.21 -68.58 -0.15 1.61 16 15 H 0.11 1.88 4.20 -51.96 -0.22 1.66 16 16 C -0.17 -3.01 5.79 -25.62 -0.15 -3.16 16 17 C 0.18 4.01 5.40 -3.28 -0.02 3.99 16 18 N -0.59 -13.90 2.94 -163.86 -0.48 -14.38 16 19 C -0.23 -5.95 10.27 -15.06 -0.15 -6.11 16 20 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 21 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 22 N -0.92 -25.63 10.29 55.49 0.57 -25.06 16 23 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 C -0.12 -1.79 7.38 -39.19 -0.29 -2.08 16 28 C -0.13 -1.68 9.68 -39.64 -0.38 -2.06 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.13 1.65 7.96 -52.49 -0.42 1.24 16 34 H 0.09 1.25 7.06 -51.93 -0.37 0.89 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.16 8.02 -51.93 -0.42 0.74 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.22 5.88 -51.93 -0.31 0.92 16 42 H 0.04 1.09 7.61 -51.93 -0.40 0.69 16 43 H 0.06 1.36 7.24 -51.93 -0.38 0.98 16 44 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.18 2.73 1.64 -52.49 -0.09 2.64 16 46 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -29.54 352.98 -10.25 -39.79 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.77 Total: 4.84 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.48 Total: -6.56 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.38 Total: -49.29 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.54 -10.25 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049863730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.151 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds