Wall clock time and date at job start Fri Apr 10 2020 23:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38349 * 119.85249 * 2 1 4 4 C 1.37963 * 120.14653 * 179.97438 * 3 2 1 5 5 C 1.39575 * 119.84777 * 0.02562 * 4 3 2 6 6 C 1.47850 * 120.14311 * 179.97438 * 5 4 3 7 7 O 1.21555 * 119.99847 * 328.03229 * 6 5 4 8 8 N 1.34776 * 119.99669 * 148.02379 * 6 5 4 9 9 C 1.45092 * 117.58492 * 188.11027 * 8 6 5 10 10 C 1.53053 * 109.56336 * 140.95021 * 9 8 6 11 11 C 1.52944 * 108.49408 * 53.69171 * 10 9 8 12 12 C 1.52926 * 109.79845 * 294.00943 * 11 10 9 13 13 H 1.08998 * 111.26266 * 293.35313 * 12 11 10 14 14 C 1.44188 * 117.76258 * 7.73674 * 8 6 5 15 15 H 1.08996 * 108.69702 * 332.97857 * 14 8 6 16 16 C 1.54066 * 111.76375 * 93.52923 * 14 8 6 17 17 C 1.54063 * 103.74171 * 153.25710 * 16 14 8 18 18 N 1.46883 * 107.70642 * 342.86523 * 17 16 14 19 19 C 1.36932 * 125.58019 * 176.99941 * 18 17 16 20 20 H 1.08006 * 120.00054 * 179.74700 * 19 18 17 21 21 C 1.38808 * 120.00170 * 0.02562 * 19 18 17 22 22 N 1.31618 * 119.99879 * 359.72179 * 21 19 18 23 23 Si 1.86801 * 120.00078 * 179.72405 * 21 19 18 24 24 H 1.48492 * 109.47392 * 59.99938 * 23 21 19 25 25 H 1.48506 * 109.46857 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47123 * 299.99733 * 23 21 19 27 27 C 1.39573 * 119.71251 * 0.25416 * 5 4 3 28 28 C 1.37961 * 119.85527 * 359.47116 * 27 5 4 29 29 H 1.09004 * 109.47060 * 90.00275 * 1 2 3 30 30 H 1.08999 * 109.47569 * 209.99796 * 1 2 3 31 31 H 1.09002 * 109.47164 * 330.00622 * 1 2 3 32 32 H 1.08010 * 119.93204 * 359.97438 * 3 2 1 33 33 H 1.07992 * 120.07567 * 180.02562 * 4 3 2 34 34 H 1.08993 * 109.54873 * 20.86186 * 9 8 6 35 35 H 1.08997 * 109.33739 * 260.90900 * 9 8 6 36 36 H 1.08998 * 109.63729 * 293.99293 * 10 9 8 37 37 H 1.08999 * 109.63019 * 173.38859 * 10 9 8 38 38 H 1.08997 * 109.41853 * 173.90637 * 11 10 9 39 39 H 1.09004 * 109.36061 * 54.07335 * 11 10 9 40 40 H 1.08991 * 110.57505 * 34.69358 * 16 14 8 41 41 H 1.08999 * 110.56919 * 271.81542 * 16 14 8 42 42 H 1.08992 * 109.81059 * 223.31464 * 17 16 14 43 43 H 1.09003 * 109.86460 * 102.44024 * 17 16 14 44 44 H 0.97002 * 119.99944 * 179.97438 * 22 21 19 45 45 H 1.08000 * 120.07308 * 179.72585 * 27 5 4 46 46 H 1.07996 * 119.93298 * 180.27517 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5753 1.2070 0.0005 5 6 4.2762 0.0000 0.0005 6 6 5.7547 -0.0001 0.0005 7 8 6.3624 0.8930 -0.5568 8 7 6.4285 -0.9902 0.6187 9 6 7.8670 -0.8478 0.7436 10 6 8.3157 -1.3613 2.1138 11 6 7.7885 -2.7856 2.2946 12 6 6.2610 -2.7675 2.3650 13 1 5.9127 -2.2613 3.2652 14 6 5.6693 -2.1107 1.1157 15 1 4.6561 -1.7756 1.3374 16 6 5.6092 -3.2596 0.0910 17 6 5.4192 -4.5167 0.9613 18 7 5.7866 -4.1656 2.3394 19 6 5.6981 -4.9968 3.4239 20 1 5.9980 -4.6449 4.4000 21 6 5.2284 -6.2937 3.2679 22 7 4.8629 -6.7226 2.0785 23 14 5.1148 -7.4301 4.7461 24 1 4.2030 -6.8375 5.7573 25 1 4.5874 -8.7501 4.3163 26 1 6.4645 -7.6064 5.3398 27 6 3.5753 -1.2070 -0.0054 28 6 2.1957 -1.2000 -0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 1.6521 2.1333 -0.0004 33 1 4.1117 2.1443 0.0010 34 1 8.1396 0.2026 0.6424 35 1 8.3564 -1.4271 -0.0393 36 1 7.9111 -0.7191 2.8961 37 1 9.4045 -1.3645 2.1651 38 1 8.1888 -3.2058 3.2172 39 1 8.1052 -3.3980 1.4503 40 1 6.5408 -3.3204 -0.4714 41 1 4.7620 -3.1284 -0.5822 42 1 6.0643 -5.3173 0.5995 43 1 4.3780 -4.8371 0.9268 44 1 4.5350 -7.6290 1.9694 45 1 4.1117 -2.1443 -0.0099 46 1 1.6521 -2.1332 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049863730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:33 Heat of formation + Delta-G solvation = 38.683152 kcal Electronic energy + Delta-G solvation = -27381.353910 eV Core-core repulsion = 23851.141758 eV Total energy + Delta-G solvation = -3530.212152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.42842 -40.00707 -39.38415 -36.68657 -35.20912 -34.00821 -33.34681 -31.92755 -30.87554 -30.05299 -28.35502 -26.61706 -25.87310 -23.97446 -23.36135 -22.94183 -22.19054 -21.45857 -19.75358 -18.97941 -18.40321 -17.44277 -17.26484 -16.70292 -16.45284 -15.95615 -15.76171 -15.58172 -15.19537 -15.01251 -14.80063 -14.57782 -14.53846 -14.13892 -14.06520 -13.69778 -13.52333 -13.13855 -12.99252 -12.93000 -12.73037 -12.69523 -12.42739 -12.39589 -12.25535 -12.09319 -11.99493 -11.65423 -11.53086 -11.49921 -11.39666 -10.88758 -10.63325 -9.92966 -9.69655 -9.56864 -8.88020 -7.81880 -5.17408 -0.09815 0.40191 1.49293 1.50917 1.57055 1.64670 1.91509 2.51478 2.77567 3.29540 3.35422 3.61783 3.70815 3.75545 3.88752 3.96383 3.98152 4.02616 4.08210 4.11164 4.31825 4.39673 4.42358 4.52029 4.56121 4.62397 4.67599 4.76507 4.82654 4.85168 4.87734 4.96708 5.00090 5.09550 5.10901 5.23915 5.28887 5.35895 5.36803 5.44570 5.54115 5.58544 5.61945 5.63549 5.76917 5.97530 6.18067 6.26363 7.00375 7.12601 7.78161 8.41513 9.27674 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.004971 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.101515 B = 5630.944228 C = 7289.023873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.061 4.061 3 C -0.130 4.130 4 C -0.069 4.069 5 C -0.163 4.163 6 C 0.553 3.447 7 O -0.571 6.571 8 N -0.578 5.578 9 C 0.113 3.887 10 C -0.118 4.118 11 C -0.122 4.122 12 C 0.155 3.845 13 H 0.055 0.945 14 C 0.121 3.879 15 H 0.112 0.888 16 C -0.155 4.155 17 C 0.192 3.808 18 N -0.611 5.611 19 C -0.235 4.235 20 H 0.082 0.918 21 C -0.059 4.059 22 N -0.949 5.949 23 Si 0.973 3.027 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.280 1.280 27 C -0.132 4.132 28 C -0.139 4.139 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.007 0.993 43 H 0.027 0.973 44 H 0.247 0.753 45 H 0.164 0.836 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.226 14.427 -3.781 15.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.088 4.088 5 C -0.166 4.166 6 C 0.344 3.656 7 O -0.453 6.453 8 N -0.307 5.307 9 C -0.009 4.009 10 C -0.156 4.156 11 C -0.162 4.162 12 C 0.048 3.952 13 H 0.073 0.927 14 C 0.016 3.984 15 H 0.129 0.871 16 C -0.194 4.194 17 C 0.067 3.933 18 N -0.336 5.336 19 C -0.364 4.364 20 H 0.100 0.900 21 C -0.252 4.252 22 N -0.598 5.598 23 Si 0.801 3.199 24 H -0.204 1.204 25 H -0.223 1.223 26 H -0.207 1.207 27 C -0.149 4.149 28 C -0.157 4.157 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.026 0.974 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.181 0.819 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.932 14.627 -3.992 15.663 hybrid contribution 0.194 -1.318 0.644 1.480 sum -3.738 13.309 -3.348 14.223 Atomic orbital electron populations 1.20932 0.88673 1.04086 1.03626 1.20538 0.97987 0.92616 0.95000 1.21295 0.93041 0.99022 1.01436 1.21316 0.94917 0.96676 0.95899 1.19888 0.92075 0.95585 1.09027 1.18772 0.88081 0.80873 0.77857 1.90699 1.70631 1.38381 1.45542 1.46805 1.08090 1.19632 1.56172 1.21352 0.78814 1.02616 0.98139 1.21790 1.02172 0.95695 0.95983 1.21936 0.96538 0.96449 1.01289 1.21061 0.93517 0.85424 0.95178 0.92748 1.21767 0.96697 0.85766 0.94202 0.87090 1.23214 1.02420 0.95481 0.98249 1.20754 0.97909 0.91696 0.82958 1.44668 1.75917 1.08476 1.04500 1.19309 1.36219 0.92876 0.87982 0.90046 1.25514 1.01704 0.98731 0.99235 1.70134 1.50382 1.17052 1.22186 0.85244 0.77826 0.77889 0.78913 1.20361 1.22257 1.20655 1.22985 0.96179 0.99440 0.96318 1.21315 0.93587 0.99128 1.01643 0.89552 0.90873 0.89721 0.82557 0.84934 0.89065 0.91744 0.91170 0.88304 0.92730 0.93375 0.90952 0.88586 0.97441 0.95477 0.94387 0.81924 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 10.00 71.24 0.71 -0.92 16 2 C -0.06 -1.27 5.89 -19.81 -0.12 -1.39 16 3 C -0.13 -2.67 9.68 22.23 0.22 -2.45 16 4 C -0.07 -1.77 9.60 22.53 0.22 -1.56 16 5 C -0.16 -4.88 5.45 -20.09 -0.11 -4.99 16 6 C 0.55 18.37 7.34 86.79 0.64 19.00 16 7 O -0.57 -21.26 16.04 -3.89 -0.06 -21.33 16 8 N -0.58 -18.24 2.78 -807.81 -2.25 -20.48 16 9 C 0.11 3.16 6.17 86.66 0.53 3.69 16 10 C -0.12 -3.09 6.10 30.59 0.19 -2.90 16 11 C -0.12 -4.18 5.31 30.55 0.16 -4.02 16 12 C 0.16 5.99 3.29 44.76 0.15 6.14 16 13 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 14 C 0.12 4.10 2.21 45.80 0.10 4.20 16 15 H 0.11 3.83 4.20 -2.42 -0.01 3.82 16 16 C -0.16 -5.54 5.79 31.31 0.18 -5.36 16 17 C 0.19 8.95 5.40 86.67 0.47 9.42 16 18 N -0.61 -29.29 2.94 -672.34 -1.97 -31.27 16 19 C -0.24 -12.48 10.27 84.03 0.86 -11.61 16 20 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 21 C -0.06 -3.19 5.49 84.86 0.47 -2.72 16 22 N -0.95 -54.65 10.29 21.65 0.22 -54.43 16 23 Si 0.97 44.29 29.55 68.60 2.03 46.31 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 C -0.13 -3.83 7.38 22.53 0.17 -3.66 16 28 C -0.14 -3.48 9.68 22.23 0.22 -3.26 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 31 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.13 3.21 7.96 -2.91 -0.02 3.19 16 34 H 0.09 2.51 7.06 -2.39 -0.02 2.50 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.05 1.78 8.02 -2.38 -0.02 1.76 16 40 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.10 3.09 5.88 -2.39 -0.01 3.07 16 42 H 0.01 0.39 7.61 -2.39 -0.02 0.37 16 43 H 0.03 1.40 7.24 -2.39 -0.02 1.38 16 44 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 45 H 0.16 5.04 1.64 -2.91 0.00 5.04 16 46 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -65.03 352.98 3.99 -61.04 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.98 Total: 22.55 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 5.05 Total: -2.40 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -4.00 Total: -106.18 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.06 Total: -21.33 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -65.03 3.99 -61.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049863730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.721 kcal (2) G-P(sol) polarization free energy of solvation -65.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds