Wall clock time and date at job start Fri Apr 10 2020 23:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38357 * 119.85491 * 2 1 4 4 C 1.37959 * 120.14725 * 180.02562 * 3 2 1 5 5 C 1.39569 * 119.85132 * 359.97438 * 4 3 2 6 6 C 1.47844 * 120.14518 * 179.97438 * 5 4 3 7 7 O 1.21549 * 119.99943 * 27.78437 * 6 5 4 8 8 N 1.34774 * 120.00312 * 207.78536 * 6 5 4 9 9 C 1.45736 * 117.76537 * 171.24004 * 8 6 5 10 10 C 1.53051 * 109.54564 * 218.89784 * 9 8 6 11 11 C 1.52947 * 108.49405 * 306.16864 * 10 9 8 12 12 C 1.52932 * 109.79157 * 66.00003 * 11 10 9 13 13 H 1.08999 * 111.26516 * 66.65543 * 12 11 10 14 14 C 1.44194 * 117.75733 * 351.22290 * 8 6 5 15 15 H 1.08995 * 109.22895 * 27.38741 * 14 8 6 16 16 C 1.54064 * 111.76351 * 266.48880 * 14 8 6 17 17 C 1.54064 * 103.74558 * 206.74807 * 16 14 8 18 18 N 1.46887 * 107.70579 * 17.12976 * 17 16 14 19 19 C 1.36943 * 125.58078 * 182.94430 * 18 17 16 20 20 H 1.07998 * 119.99926 * 184.30526 * 19 18 17 21 21 C 1.38805 * 119.99675 * 4.30218 * 19 18 17 22 22 N 1.31616 * 120.00302 * 352.43114 * 21 19 18 23 23 Si 1.86806 * 119.99808 * 172.42853 * 21 19 18 24 24 H 1.48500 * 109.46951 * 94.98675 * 23 21 19 25 25 H 1.48500 * 109.47156 * 214.98714 * 23 21 19 26 26 H 1.48494 * 109.46959 * 334.99073 * 23 21 19 27 27 C 1.39582 * 119.71508 * 0.25057 * 5 4 3 28 28 C 1.37956 * 119.84769 * 359.51866 * 27 5 4 29 29 H 1.08998 * 109.47096 * 89.99500 * 1 2 3 30 30 H 1.08994 * 109.46819 * 209.99837 * 1 2 3 31 31 H 1.08998 * 109.46894 * 329.99685 * 1 2 3 32 32 H 1.08001 * 119.92740 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.07544 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.45491 * 338.92028 * 9 8 6 35 35 H 1.09002 * 109.45178 * 98.88080 * 9 8 6 36 36 H 1.08995 * 109.63125 * 65.88589 * 10 9 8 37 37 H 1.09001 * 109.63342 * 186.47872 * 10 9 8 38 38 H 1.08998 * 109.40726 * 305.90993 * 11 10 9 39 39 H 1.08995 * 109.42601 * 186.10379 * 11 10 9 40 40 H 1.09002 * 110.57515 * 325.31002 * 16 14 8 41 41 H 1.09001 * 110.57317 * 88.18820 * 16 14 8 42 42 H 1.09003 * 109.80739 * 136.67111 * 17 16 14 43 43 H 1.08997 * 109.81414 * 257.57774 * 17 16 14 44 44 H 0.97005 * 120.00087 * 179.97438 * 22 21 19 45 45 H 1.07990 * 120.07713 * 179.72459 * 27 5 4 46 46 H 1.08000 * 119.93085 * 180.22836 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5754 1.2070 -0.0005 5 6 4.2762 0.0000 -0.0005 6 6 5.7547 0.0000 -0.0017 7 8 6.3628 0.9315 0.4881 8 7 6.4282 -1.0328 -0.5458 9 6 7.8713 -0.8977 -0.6977 10 6 8.3070 -1.5213 -2.0258 11 6 7.7848 -2.9578 -2.0817 12 6 6.2565 -2.9515 -2.1356 13 1 5.8957 -2.5233 -3.0708 14 6 5.6715 -2.1961 -0.9375 15 1 4.6519 -1.8964 -1.1795 16 6 5.6352 -3.2566 0.1795 17 6 5.4439 -4.5828 -0.5810 18 7 5.7892 -4.3444 -1.9886 19 6 5.6938 -5.2637 -2.9992 20 1 6.0381 -5.0129 -3.9916 21 6 5.1545 -6.5178 -2.7478 22 7 4.8729 -6.8778 -1.5136 23 14 4.8282 -7.6945 -4.1615 24 1 5.9842 -8.6135 -4.3174 25 1 3.6033 -8.4839 -3.8758 26 1 4.6378 -6.9215 -5.4150 27 6 3.5753 -1.2070 -0.0053 28 6 2.1958 -1.2000 0.0001 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6522 2.1332 -0.0004 33 1 4.1118 2.1444 -0.0001 34 1 8.1401 0.1586 -0.6870 35 1 8.3722 -1.4082 0.1248 36 1 7.8906 -0.9476 -2.8538 37 1 9.3951 -1.5246 -2.0893 38 1 8.1139 -3.4975 -1.1937 39 1 8.1768 -3.4516 -2.9708 40 1 6.5751 -3.2639 0.7315 41 1 4.7963 -3.0763 0.8517 42 1 6.1008 -5.3460 -0.1636 43 1 4.4057 -4.9059 -0.5049 44 1 4.4957 -7.7541 -1.3380 45 1 4.1117 -2.1443 -0.0098 46 1 1.6522 -2.1332 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049863731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:36 Heat of formation + Delta-G solvation = 60.173540 kcal Electronic energy + Delta-G solvation = -27389.214461 eV Core-core repulsion = 23859.934202 eV Total energy + Delta-G solvation = -3529.280259 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.14147 -38.81743 -38.01327 -35.10193 -34.01640 -32.30366 -32.17078 -30.82881 -29.19943 -28.53370 -27.34768 -24.91248 -24.47338 -22.86210 -22.13204 -21.65229 -20.67406 -19.97893 -18.49891 -17.27958 -17.11943 -16.05331 -15.96566 -15.18495 -14.84088 -14.76364 -14.37209 -14.31405 -13.87236 -13.73526 -13.58522 -13.42012 -13.29351 -12.77002 -12.55322 -12.32428 -12.22223 -12.08331 -11.80115 -11.69686 -11.33305 -11.10014 -10.98153 -10.89555 -10.71250 -10.57243 -10.30804 -10.17996 -10.08143 -9.96602 -9.72116 -9.50086 -8.84483 -8.63795 -8.58052 -8.31827 -6.94594 -5.80651 -3.13615 0.95121 1.41035 2.90062 3.18373 3.35431 3.41903 3.43164 3.84240 4.40095 4.57620 4.80666 4.85781 4.98373 5.03050 5.19530 5.22210 5.25507 5.27856 5.39933 5.42472 5.48003 5.48868 5.54865 5.64796 5.67719 5.72277 5.83884 5.97996 6.00621 6.04047 6.10016 6.12525 6.17067 6.27355 6.36646 6.39063 6.42152 6.49085 6.56588 6.71291 6.87832 6.95627 6.97719 7.46183 7.48570 7.56853 7.73173 8.15486 8.31686 9.12667 9.72633 10.36834 11.31007 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.005046 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.656315 B = 5547.693944 C = 7246.437863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.136 4.136 4 C -0.062 4.062 5 C -0.140 4.140 6 C 0.554 3.446 7 O -0.548 6.548 8 N -0.579 5.579 9 C 0.117 3.883 10 C -0.132 4.132 11 C -0.131 4.131 12 C 0.161 3.839 13 H 0.058 0.942 14 C 0.091 3.909 15 H 0.121 0.879 16 C -0.169 4.169 17 C 0.178 3.822 18 N -0.595 5.595 19 C -0.229 4.229 20 H 0.079 0.921 21 C -0.003 4.003 22 N -0.919 5.919 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.280 1.280 27 C -0.126 4.126 28 C -0.127 4.127 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.253 0.747 45 H 0.184 0.816 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 12.909 2.940 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.066 4.066 3 C -0.154 4.154 4 C -0.080 4.080 5 C -0.143 4.143 6 C 0.343 3.657 7 O -0.428 6.428 8 N -0.309 5.309 9 C -0.005 4.005 10 C -0.170 4.170 11 C -0.171 4.171 12 C 0.052 3.948 13 H 0.076 0.924 14 C -0.014 4.014 15 H 0.138 0.862 16 C -0.208 4.208 17 C 0.053 3.947 18 N -0.320 5.320 19 C -0.357 4.357 20 H 0.097 0.903 21 C -0.200 4.200 22 N -0.566 5.566 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.143 4.143 28 C -0.145 4.145 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.200 0.800 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.264 13.106 3.149 13.869 hybrid contribution -0.086 -0.826 -0.699 1.086 sum -3.351 12.280 2.450 12.963 Atomic orbital electron populations 1.20851 0.91125 1.02874 1.02559 1.20166 0.96211 0.93298 0.96970 1.20938 0.93767 0.97633 1.03046 1.21142 0.93857 0.97227 0.95818 1.19898 0.92937 0.94566 1.06902 1.18479 0.87313 0.81901 0.77987 1.90716 1.69942 1.36336 1.45792 1.46943 1.07694 1.15835 1.60440 1.21326 0.79526 1.01857 0.97771 1.21860 1.00600 0.97921 0.96650 1.22115 0.98277 0.94199 1.02516 1.20936 0.92232 0.86877 0.94710 0.92424 1.22415 0.97330 0.85186 0.96432 0.86200 1.23310 1.01533 0.97967 0.98016 1.21095 1.00661 0.90022 0.82916 1.44493 1.76610 1.05912 1.04937 1.19005 1.34794 0.92612 0.89256 0.90336 1.24785 1.01081 0.97548 0.96573 1.69959 1.49012 1.20501 1.17125 0.86151 0.77614 0.80879 0.81434 1.21683 1.21608 1.20596 1.23261 0.95399 1.00353 0.95263 1.21136 0.94114 0.97856 1.01410 0.90867 0.91231 0.91544 0.85740 0.85290 0.89699 0.92092 0.91772 0.91062 0.91933 0.91828 0.91328 0.90863 0.93841 0.92732 0.93659 0.79951 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.07 -0.77 5.89 -104.53 -0.62 -1.39 16 3 C -0.14 -1.58 9.68 -39.64 -0.38 -1.97 16 4 C -0.06 -0.84 9.59 -39.19 -0.38 -1.22 16 5 C -0.14 -2.16 5.60 -104.97 -0.59 -2.75 16 6 C 0.55 9.40 7.39 -12.33 -0.09 9.31 16 7 O -0.55 -10.43 15.98 5.32 0.09 -10.34 16 8 N -0.58 -9.38 2.80 -168.69 -0.47 -9.85 16 9 C 0.12 1.73 6.19 -4.43 -0.03 1.70 16 10 C -0.13 -1.84 6.10 -26.73 -0.16 -2.01 16 11 C -0.13 -2.26 5.31 -26.79 -0.14 -2.41 16 12 C 0.16 3.08 3.29 -67.21 -0.22 2.86 16 13 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 14 C 0.09 1.54 2.17 -68.48 -0.15 1.39 16 15 H 0.12 2.05 3.86 -63.55 -0.25 1.81 16 16 C -0.17 -2.99 5.76 -25.62 -0.15 -3.14 16 17 C 0.18 3.98 5.40 -3.28 -0.02 3.96 16 18 N -0.59 -13.87 2.94 -163.74 -0.48 -14.36 16 19 C -0.23 -5.95 10.26 -15.06 -0.15 -6.11 16 20 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 21 C 0.00 -0.09 5.47 -17.43 -0.10 -0.18 16 22 N -0.92 -25.55 10.34 55.49 0.57 -24.97 16 23 Si 0.91 21.19 29.56 -169.99 -5.02 16.16 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C -0.13 -1.86 7.35 -39.18 -0.29 -2.15 16 28 C -0.13 -1.67 9.68 -39.64 -0.38 -2.06 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.13 1.67 7.89 -52.49 -0.41 1.25 16 34 H 0.08 1.24 7.10 -51.93 -0.37 0.87 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.16 8.02 -51.93 -0.42 0.74 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 1.18 6.27 -51.93 -0.33 0.85 16 42 H 0.04 1.09 7.64 -51.93 -0.40 0.69 16 43 H 0.05 1.34 7.23 -51.93 -0.38 0.96 16 44 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.18 2.86 1.67 -52.52 -0.09 2.77 16 46 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -29.53 353.18 -10.30 -39.83 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.82 Total: 4.99 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -3.48 Total: -6.79 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.38 Total: -49.17 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.53 -10.30 -39.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049863731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.001 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds