Wall clock time and date at job start Fri Apr 10 2020 23:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37980 * 120.07409 * 2 1 4 4 C 1.38339 * 120.14064 * 179.72202 * 3 2 1 5 5 C 1.38372 * 120.29541 * 0.02730 * 4 3 2 6 6 C 1.37930 * 120.14774 * 359.97438 * 5 4 3 7 7 C 1.39555 * 120.07072 * 179.73264 * 2 1 3 8 8 C 1.47848 * 120.14562 * 0.24484 * 7 2 1 9 9 O 1.21553 * 120.00383 * 304.62093 * 8 7 2 10 10 N 1.34778 * 119.99391 * 124.61542 * 8 7 2 11 11 C 1.46803 * 119.61794 * 4.09648 * 10 8 7 12 12 C 1.53454 * 107.65466 * 232.18058 * 11 10 8 13 13 C 1.52748 * 108.48925 * 302.06264 * 12 11 10 14 14 C 1.52947 * 110.77704 * 63.64047 * 13 12 11 15 15 H 1.09004 * 112.26723 * 71.23198 * 14 13 12 16 16 C 1.55532 * 107.01236 * 195.24009 * 14 13 12 17 17 N 1.48541 * 104.59759 * 77.75069 * 16 14 13 18 18 C 1.36938 * 125.78102 * 204.63736 * 17 16 14 19 19 H 1.08000 * 119.99636 * 354.87028 * 18 17 16 20 20 C 1.38806 * 119.99952 * 174.87190 * 18 17 16 21 21 N 1.31621 * 120.00308 * 5.07671 * 20 18 17 22 22 Si 1.86804 * 119.99999 * 185.08040 * 20 18 17 23 23 H 1.48494 * 109.47139 * 94.99463 * 22 20 18 24 24 H 1.48499 * 109.47401 * 214.99926 * 22 20 18 25 25 H 1.48499 * 109.46881 * 334.99619 * 22 20 18 26 26 C 1.47285 * 108.51608 * 24.55708 * 17 16 14 27 27 C 1.45175 * 119.61282 * 183.81431 * 10 8 7 28 28 H 1.08998 * 109.70886 * 12.22633 * 27 10 8 29 29 H 1.09009 * 109.47090 * 85.10376 * 1 2 3 30 30 H 1.08995 * 109.47146 * 205.10050 * 1 2 3 31 31 H 1.08999 * 109.46890 * 325.10624 * 1 2 3 32 32 H 1.07998 * 119.92558 * 359.71126 * 3 2 1 33 33 H 1.08001 * 119.85079 * 180.02562 * 4 3 2 34 34 H 1.08009 * 119.92729 * 179.97438 * 5 4 3 35 35 H 1.08004 * 120.07957 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.82102 * 351.71397 * 11 10 8 37 37 H 1.08995 * 109.82480 * 112.64372 * 11 10 8 38 38 H 1.08997 * 109.63389 * 61.75655 * 12 11 10 39 39 H 1.09002 * 109.63529 * 182.16057 * 12 11 10 40 40 H 1.09003 * 109.22073 * 183.97934 * 13 12 11 41 41 H 1.09004 * 109.21737 * 303.30911 * 13 12 11 42 42 H 1.09004 * 110.39062 * 196.65575 * 16 14 13 43 43 H 1.08996 * 110.39520 * 319.04781 * 16 14 13 44 44 H 0.96996 * 120.00280 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.98652 * 239.69599 * 26 17 16 46 46 H 1.09001 * 109.98896 * 118.38750 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1957 0.0058 5 6 4.2813 0.0017 0.0111 6 6 3.6023 -1.1989 0.0111 7 6 2.2063 -1.2077 0.0056 8 6 1.4719 -2.4909 0.0062 9 8 0.6477 -2.7192 0.8699 10 7 1.7163 -3.4075 -0.9513 11 6 2.7761 -3.1620 -1.9371 12 6 2.1665 -3.3512 -3.3326 13 6 1.5968 -4.7655 -3.4247 14 6 0.4537 -4.9560 -2.4266 15 1 -0.4425 -4.4067 -2.7152 16 6 0.2038 -6.4865 -2.3075 17 7 1.2964 -6.9769 -1.4288 18 6 1.7908 -8.2536 -1.4026 19 1 1.3273 -9.0245 -2.0003 20 6 2.8876 -8.5570 -0.6078 21 7 3.3906 -7.6441 0.1959 22 14 3.6499 -10.2610 -0.6789 23 1 4.7889 -10.2543 -1.6316 24 1 4.1361 -10.6425 0.6713 25 1 2.6305 -11.2407 -1.1330 26 6 1.7607 -5.8581 -0.5909 27 6 0.9325 -4.6288 -0.9920 28 1 0.0725 -4.5359 -0.3287 29 1 -0.3634 0.0877 -1.0240 30 1 -0.3633 -0.9306 0.4359 31 1 -0.3633 0.8429 0.5879 32 1 1.6585 2.1293 -0.0047 33 1 4.1183 2.1330 0.0062 34 1 5.3613 0.0099 0.0152 35 1 4.1493 -2.1301 0.0148 36 1 3.1499 -2.1435 -1.8320 37 1 3.5896 -3.8723 -1.7898 38 1 1.3687 -2.6244 -3.4853 39 1 2.9375 -3.2136 -4.0908 40 1 1.2238 -4.9370 -4.4344 41 1 2.3862 -5.4851 -3.2076 42 1 -0.7679 -6.6784 -1.8525 43 1 0.2650 -6.9587 -3.2879 44 1 4.1573 -7.8560 0.7510 45 1 2.8188 -5.6702 -0.7732 46 1 1.5989 -6.0889 0.4620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049958984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:41 Heat of formation + Delta-G solvation = 22.244307 kcal Electronic energy + Delta-G solvation = -27357.036948 eV Core-core repulsion = 23826.111954 eV Total energy + Delta-G solvation = -3530.924994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.67835 -39.05342 -37.54170 -35.22380 -32.97834 -32.69772 -31.91514 -31.21473 -29.17424 -27.59828 -26.85626 -25.50610 -24.33828 -23.05760 -22.16152 -21.59031 -20.35482 -19.80130 -18.19694 -17.23439 -16.85936 -16.24451 -15.71058 -15.59642 -14.87267 -14.51103 -14.28462 -14.23130 -13.91473 -13.70197 -13.64468 -13.23394 -13.18683 -12.82056 -12.48949 -12.28535 -12.14091 -11.89188 -11.77494 -11.56905 -11.51538 -11.15533 -11.01146 -10.98201 -10.78808 -10.64537 -10.35259 -10.24847 -9.90738 -9.81692 -9.58216 -9.48195 -8.89891 -8.76398 -8.59484 -8.11121 -6.83059 -5.70636 -3.04354 0.99820 1.25516 2.90786 3.28401 3.40179 3.45582 3.47742 3.67389 4.50046 4.57257 4.74057 4.77732 4.91663 5.00381 5.18407 5.20130 5.24264 5.38285 5.38922 5.49417 5.52427 5.57376 5.60261 5.71144 5.72688 5.75366 5.82906 5.94071 6.04443 6.10385 6.15260 6.21090 6.24514 6.29406 6.31672 6.35223 6.46586 6.48520 6.65506 6.75087 6.81423 6.93218 6.95641 7.49571 7.58354 7.80281 7.82911 8.23131 8.46218 9.20698 9.80903 10.47901 11.40647 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.004017 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.802137 B = 6969.110449 C = 7405.612900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 C -0.128 4.128 4 C -0.103 4.103 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.118 4.118 8 C 0.557 3.443 9 O -0.536 6.536 10 N -0.578 5.578 11 C 0.098 3.902 12 C -0.129 4.129 13 C -0.110 4.110 14 C -0.110 4.110 15 H 0.076 0.924 16 C 0.135 3.865 17 N -0.603 5.603 18 C -0.227 4.227 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.178 3.822 27 C 0.117 3.883 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.021 0.979 43 H 0.045 0.955 44 H 0.252 0.748 45 H 0.054 0.946 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 18.216 -5.521 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.040 4.040 3 C -0.146 4.146 4 C -0.121 4.121 5 C -0.149 4.149 6 C -0.104 4.104 7 C -0.121 4.121 8 C 0.344 3.656 9 O -0.415 6.415 10 N -0.308 5.308 11 C -0.024 4.024 12 C -0.167 4.167 13 C -0.147 4.147 14 C -0.130 4.130 15 H 0.095 0.905 16 C 0.009 3.991 17 N -0.331 5.331 18 C -0.355 4.355 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.052 3.948 27 C 0.013 3.987 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.768 17.922 -4.960 18.611 hybrid contribution 0.639 -0.917 0.030 1.118 sum -0.129 17.005 -4.929 17.705 Atomic orbital electron populations 1.21052 0.90746 1.04813 1.02392 1.19887 0.96396 0.91537 0.96208 1.20964 0.94276 0.97250 1.02123 1.21256 0.94197 0.98148 0.98499 1.21071 1.00114 0.92100 1.01623 1.21370 0.92753 0.99021 0.97215 1.19848 0.94001 0.93349 1.04925 1.18350 0.82409 0.83292 0.81500 1.90742 1.35351 1.78863 1.36498 1.47432 1.35526 1.18732 1.29093 1.22057 0.90362 1.01984 0.88025 1.21855 1.00365 0.98320 0.96206 1.21443 0.98900 0.96307 0.98091 1.22649 0.97649 0.98033 0.94670 0.90529 1.21953 0.91971 0.90552 0.94619 1.44678 1.39193 1.07178 1.42023 1.19056 1.08931 0.84667 1.22837 0.90356 1.24802 0.98493 0.97962 0.99032 1.69972 1.26038 1.32658 1.28060 0.86129 0.79323 0.83595 0.76920 1.21691 1.21795 1.20655 1.21247 0.96152 0.82832 0.94561 1.21968 0.95140 0.84840 0.96746 0.89022 0.91209 0.89166 0.91308 0.85687 0.85874 0.85525 0.85054 0.89564 0.90483 0.92120 0.91160 0.92592 0.89947 0.96100 0.93646 0.93793 0.92783 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.69 36.01 0.35 -1.26 16 2 C -0.04 -0.51 5.91 -104.22 -0.62 -1.12 16 3 C -0.13 -1.32 9.71 -39.64 -0.38 -1.71 16 4 C -0.10 -0.97 10.04 -39.50 -0.40 -1.37 16 5 C -0.13 -1.35 10.03 -39.64 -0.40 -1.74 16 6 C -0.09 -1.08 7.44 -39.19 -0.29 -1.37 16 7 C -0.12 -1.73 4.78 -104.97 -0.50 -2.23 16 8 C 0.56 9.97 6.49 -12.33 -0.08 9.89 16 9 O -0.54 -11.35 14.49 5.32 0.08 -11.27 16 10 N -0.58 -10.11 2.71 -166.29 -0.45 -10.56 16 11 C 0.10 1.43 5.25 -3.64 -0.02 1.42 16 12 C -0.13 -1.72 6.10 -26.62 -0.16 -1.88 16 13 C -0.11 -1.75 4.82 -26.89 -0.13 -1.88 16 14 C -0.11 -1.92 3.73 -88.39 -0.33 -2.25 16 15 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 16 C 0.14 2.76 6.58 -1.57 -0.01 2.75 16 17 N -0.60 -15.23 3.02 -169.03 -0.51 -15.74 16 18 C -0.23 -6.26 10.29 -15.06 -0.15 -6.41 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 21 N -0.92 -27.04 10.36 55.49 0.57 -26.46 16 22 Si 0.91 22.07 29.56 -169.99 -5.02 17.04 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 C 0.18 4.37 4.57 -3.33 -0.02 4.35 16 27 C 0.12 2.34 2.91 -67.44 -0.20 2.14 16 28 H 0.09 1.98 6.98 -51.93 -0.36 1.61 16 29 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 30 H 0.09 1.35 5.57 -51.93 -0.29 1.06 16 31 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 35 H 0.13 1.67 7.44 -52.48 -0.39 1.28 16 36 H 0.09 1.08 4.76 -51.93 -0.25 0.84 16 37 H 0.08 1.23 7.52 -51.93 -0.39 0.84 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.59 7.26 -51.93 -0.38 1.21 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.89 7.99 -51.93 -0.41 0.47 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.05 1.44 6.36 -51.93 -0.33 1.11 16 46 H 0.04 1.21 7.66 -51.93 -0.40 0.81 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -32.02 354.12 -10.40 -42.42 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.97 Total: 2.18 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -3.43 Total: -2.95 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.39 Total: -52.76 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.02 -10.40 -42.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049958984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.666 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds