Wall clock time and date at job start Fri Apr 10 2020 23:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37980 * 120.07409 * 2 1 4 4 C 1.38339 * 120.14064 * 179.72202 * 3 2 1 5 5 C 1.38372 * 120.29541 * 0.02730 * 4 3 2 6 6 C 1.37930 * 120.14774 * 359.97438 * 5 4 3 7 7 C 1.39555 * 120.07072 * 179.73264 * 2 1 3 8 8 C 1.47848 * 120.14562 * 0.24484 * 7 2 1 9 9 O 1.21553 * 120.00383 * 304.62093 * 8 7 2 10 10 N 1.34778 * 119.99391 * 124.61542 * 8 7 2 11 11 C 1.46803 * 119.61794 * 4.09648 * 10 8 7 12 12 C 1.53454 * 107.65466 * 232.18058 * 11 10 8 13 13 C 1.52748 * 108.48925 * 302.06264 * 12 11 10 14 14 C 1.52947 * 110.77704 * 63.64047 * 13 12 11 15 15 H 1.09004 * 112.26723 * 71.23198 * 14 13 12 16 16 C 1.55532 * 107.01236 * 195.24009 * 14 13 12 17 17 N 1.48541 * 104.59759 * 77.75069 * 16 14 13 18 18 C 1.36938 * 125.78102 * 204.63736 * 17 16 14 19 19 H 1.08000 * 119.99636 * 354.87028 * 18 17 16 20 20 C 1.38806 * 119.99952 * 174.87190 * 18 17 16 21 21 N 1.31621 * 120.00308 * 5.07671 * 20 18 17 22 22 Si 1.86804 * 119.99999 * 185.08040 * 20 18 17 23 23 H 1.48494 * 109.47139 * 94.99463 * 22 20 18 24 24 H 1.48499 * 109.47401 * 214.99926 * 22 20 18 25 25 H 1.48499 * 109.46881 * 334.99619 * 22 20 18 26 26 C 1.47285 * 108.51608 * 24.55708 * 17 16 14 27 27 C 1.45175 * 119.61282 * 183.81431 * 10 8 7 28 28 H 1.08998 * 109.70886 * 12.22633 * 27 10 8 29 29 H 1.09009 * 109.47090 * 85.10376 * 1 2 3 30 30 H 1.08995 * 109.47146 * 205.10050 * 1 2 3 31 31 H 1.08999 * 109.46890 * 325.10624 * 1 2 3 32 32 H 1.07998 * 119.92558 * 359.71126 * 3 2 1 33 33 H 1.08001 * 119.85079 * 180.02562 * 4 3 2 34 34 H 1.08009 * 119.92729 * 179.97438 * 5 4 3 35 35 H 1.08004 * 120.07957 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.82102 * 351.71397 * 11 10 8 37 37 H 1.08995 * 109.82480 * 112.64372 * 11 10 8 38 38 H 1.08997 * 109.63389 * 61.75655 * 12 11 10 39 39 H 1.09002 * 109.63529 * 182.16057 * 12 11 10 40 40 H 1.09003 * 109.22073 * 183.97934 * 13 12 11 41 41 H 1.09004 * 109.21737 * 303.30911 * 13 12 11 42 42 H 1.09004 * 110.39062 * 196.65575 * 16 14 13 43 43 H 1.08996 * 110.39520 * 319.04781 * 16 14 13 44 44 H 0.96996 * 120.00280 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.98652 * 239.69599 * 26 17 16 46 46 H 1.09001 * 109.98896 * 118.38750 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1957 0.0058 5 6 4.2813 0.0017 0.0111 6 6 3.6023 -1.1989 0.0111 7 6 2.2063 -1.2077 0.0056 8 6 1.4719 -2.4909 0.0062 9 8 0.6477 -2.7192 0.8699 10 7 1.7163 -3.4075 -0.9513 11 6 2.7761 -3.1620 -1.9371 12 6 2.1665 -3.3512 -3.3326 13 6 1.5968 -4.7655 -3.4247 14 6 0.4537 -4.9560 -2.4266 15 1 -0.4425 -4.4067 -2.7152 16 6 0.2038 -6.4865 -2.3075 17 7 1.2964 -6.9769 -1.4288 18 6 1.7908 -8.2536 -1.4026 19 1 1.3273 -9.0245 -2.0003 20 6 2.8876 -8.5570 -0.6078 21 7 3.3906 -7.6441 0.1959 22 14 3.6499 -10.2610 -0.6789 23 1 4.7889 -10.2543 -1.6316 24 1 4.1361 -10.6425 0.6713 25 1 2.6305 -11.2407 -1.1330 26 6 1.7607 -5.8581 -0.5909 27 6 0.9325 -4.6288 -0.9920 28 1 0.0725 -4.5359 -0.3287 29 1 -0.3634 0.0877 -1.0240 30 1 -0.3633 -0.9306 0.4359 31 1 -0.3633 0.8429 0.5879 32 1 1.6585 2.1293 -0.0047 33 1 4.1183 2.1330 0.0062 34 1 5.3613 0.0099 0.0152 35 1 4.1493 -2.1301 0.0148 36 1 3.1499 -2.1435 -1.8320 37 1 3.5896 -3.8723 -1.7898 38 1 1.3687 -2.6244 -3.4853 39 1 2.9375 -3.2136 -4.0908 40 1 1.2238 -4.9370 -4.4344 41 1 2.3862 -5.4851 -3.2076 42 1 -0.7679 -6.6784 -1.8525 43 1 0.2650 -6.9587 -3.2879 44 1 4.1573 -7.8560 0.7510 45 1 2.8188 -5.6702 -0.7732 46 1 1.5989 -6.0889 0.4620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049958984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:40 Heat of formation + Delta-G solvation = 4.059948 kcal Electronic energy + Delta-G solvation = -27357.825481 eV Core-core repulsion = 23826.111954 eV Total energy + Delta-G solvation = -3531.713527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.99596 -40.27196 -38.90865 -36.84303 -34.59216 -33.70123 -33.47601 -32.32864 -30.92089 -29.14957 -27.92166 -27.19464 -25.86105 -24.29969 -23.44443 -22.69691 -21.99435 -21.15673 -19.59782 -18.91597 -18.46078 -17.49623 -16.97434 -16.76887 -16.50623 -16.05882 -15.70402 -15.49053 -15.26735 -14.93194 -14.69740 -14.62312 -14.39669 -14.05422 -14.04487 -13.63248 -13.57843 -13.29967 -13.06357 -13.01921 -12.84862 -12.73859 -12.51890 -12.44091 -12.14685 -12.11278 -11.99361 -11.81293 -11.66248 -11.51464 -11.20158 -10.85583 -10.72343 -9.84480 -9.65584 -9.58072 -8.93472 -7.86528 -5.23193 0.05600 0.40076 1.43873 1.45843 1.54949 1.59618 1.93943 2.48041 2.76419 3.32127 3.37384 3.61824 3.70737 3.89026 3.89724 3.94778 3.97826 4.04195 4.14513 4.18594 4.37770 4.40947 4.49866 4.51143 4.56227 4.73297 4.73981 4.76610 4.80431 4.85621 4.90463 4.92862 5.01197 5.05324 5.17320 5.24164 5.26179 5.36180 5.41217 5.41999 5.52867 5.54692 5.58462 5.58913 5.76507 5.99951 6.12837 6.37984 7.02811 7.08272 7.71905 8.38612 9.23645 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.004017 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.802137 B = 6969.110449 C = 7405.612900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.052 4.052 3 C -0.123 4.123 4 C -0.090 4.090 5 C -0.126 4.126 6 C -0.099 4.099 7 C -0.144 4.144 8 C 0.552 3.448 9 O -0.582 6.582 10 N -0.579 5.579 11 C 0.098 3.902 12 C -0.119 4.119 13 C -0.105 4.105 14 C -0.093 4.093 15 H 0.109 0.891 16 C 0.129 3.871 17 N -0.622 5.622 18 C -0.239 4.239 19 H 0.087 0.913 20 C -0.065 4.065 21 N -0.953 5.953 22 Si 0.979 3.021 23 H -0.283 1.283 24 H -0.299 1.299 25 H -0.266 1.266 26 C 0.198 3.802 27 C 0.128 3.872 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.156 0.844 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.022 0.978 43 H 0.061 0.939 44 H 0.245 0.755 45 H 0.026 0.974 46 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 21.147 -7.986 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.053 4.053 3 C -0.140 4.140 4 C -0.107 4.107 5 C -0.144 4.144 6 C -0.117 4.117 7 C -0.147 4.147 8 C 0.342 3.658 9 O -0.463 6.463 10 N -0.309 5.309 11 C -0.024 4.024 12 C -0.157 4.157 13 C -0.143 4.143 14 C -0.112 4.112 15 H 0.127 0.873 16 C 0.004 3.996 17 N -0.349 5.349 18 C -0.368 4.368 19 H 0.105 0.895 20 C -0.258 4.258 21 N -0.602 5.602 22 Si 0.807 3.193 23 H -0.210 1.210 24 H -0.226 1.226 25 H -0.191 1.191 26 C 0.072 3.928 27 C 0.022 3.978 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.174 0.826 33 H 0.179 0.821 34 H 0.171 0.829 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.045 0.955 46 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges -0.294 20.862 -7.476 22.163 hybrid contribution 0.477 -1.783 0.854 2.033 sum 0.183 19.079 -6.622 20.196 Atomic orbital electron populations 1.21012 0.90705 1.03732 1.03271 1.20087 0.96725 0.91797 0.96680 1.21321 0.94928 0.97215 1.00564 1.21726 0.93996 0.99216 0.95807 1.21391 1.01482 0.91322 1.00222 1.21367 0.92001 0.99941 0.98418 1.19666 0.94622 0.92010 1.08426 1.19048 0.81872 0.84462 0.80407 1.90703 1.37540 1.79999 1.38076 1.47507 1.35853 1.17622 1.29874 1.22226 0.89053 1.02761 0.88349 1.21839 1.01554 0.96743 0.95563 1.21388 0.97050 0.97158 0.98720 1.22651 0.99562 0.95867 0.93145 0.87268 1.22177 0.90334 0.92777 0.94283 1.44945 1.40230 1.06801 1.42911 1.19494 1.08928 0.85985 1.22348 0.89513 1.25672 0.99284 1.01865 0.99001 1.70225 1.26286 1.34704 1.29017 0.85051 0.78579 0.79313 0.76354 1.21024 1.22606 1.19094 1.20805 0.95506 0.85088 0.91425 1.21532 0.93768 0.84196 0.98260 0.91323 0.89889 0.92826 0.89141 0.82612 0.82061 0.82915 0.86303 0.87028 0.92775 0.90274 0.88222 0.89779 0.93842 0.95980 0.92075 0.94609 0.95547 0.99909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.69 71.24 0.69 -2.33 16 2 C -0.05 -1.25 5.91 -19.61 -0.12 -1.37 16 3 C -0.12 -2.05 9.71 22.23 0.22 -1.83 16 4 C -0.09 -1.28 10.04 22.33 0.22 -1.05 16 5 C -0.13 -2.21 10.03 22.23 0.22 -1.99 16 6 C -0.10 -2.45 7.44 22.53 0.17 -2.28 16 7 C -0.14 -4.23 4.78 -20.09 -0.10 -4.32 16 8 C 0.55 20.87 6.49 86.79 0.56 21.44 16 9 O -0.58 -26.62 14.49 -3.88 -0.06 -26.68 16 10 N -0.58 -21.22 2.71 -798.30 -2.17 -23.39 16 11 C 0.10 2.86 5.25 86.47 0.45 3.31 16 12 C -0.12 -2.89 6.10 30.66 0.19 -2.70 16 13 C -0.11 -3.20 4.82 30.49 0.15 -3.06 16 14 C -0.09 -3.20 3.73 -9.35 -0.03 -3.23 16 15 H 0.11 3.14 8.14 -2.39 -0.02 3.13 16 16 C 0.13 5.32 6.58 86.86 0.57 5.89 16 17 N -0.62 -32.87 3.02 -688.70 -2.08 -34.95 16 18 C -0.24 -13.62 10.29 84.03 0.86 -12.75 16 19 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 20 C -0.07 -3.81 5.48 84.86 0.47 -3.35 16 21 N -0.95 -59.57 10.36 21.65 0.22 -59.34 16 22 Si 0.98 46.68 29.56 68.60 2.03 48.71 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 C 0.20 10.56 4.57 86.42 0.40 10.95 16 27 C 0.13 5.41 2.91 46.02 0.13 5.54 16 28 H 0.07 3.20 6.98 -2.39 -0.02 3.19 16 29 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.05 1.66 5.57 -2.39 -0.01 1.65 16 31 H 0.09 1.62 8.12 -2.39 -0.02 1.60 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.12 3.15 7.44 -2.91 -0.02 3.13 16 36 H 0.11 2.71 4.76 -2.39 -0.01 2.70 16 37 H 0.05 1.83 7.52 -2.39 -0.02 1.81 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.04 1.68 7.26 -2.38 -0.02 1.66 16 42 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.06 2.32 7.99 -2.39 -0.02 2.31 16 44 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.03 1.53 6.36 -2.38 -0.02 1.52 16 46 H -0.02 -1.10 7.66 -2.39 -0.02 -1.12 16 Total: -1.00 -77.17 354.12 3.97 -73.19 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.97 Total: 15.61 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 5.06 Total: 6.86 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -4.03 Total: -117.69 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.06 Total: -26.68 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -77.17 3.97 -73.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049958984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.255 kcal (2) G-P(sol) polarization free energy of solvation -77.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds