Wall clock time and date at job start Fri Apr 10 2020 23:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38383 * 119.92824 * 2 1 4 4 C 1.38331 * 120.29191 * 179.97438 * 3 2 1 5 5 C 1.37977 * 120.14945 * 0.02626 * 4 3 2 6 6 C 1.39555 * 119.84865 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.14299 * 179.97438 * 6 5 4 8 8 O 1.21556 * 120.00604 * 223.15333 * 7 6 5 9 9 N 1.34785 * 119.99854 * 43.15725 * 7 6 5 10 10 C 1.44502 * 116.63011 * 3.64151 * 9 7 6 11 11 C 1.51624 * 112.65561 * 154.60500 * 10 9 7 12 12 C 1.51330 * 111.97842 * 42.75854 * 11 10 9 13 13 C 1.50712 * 113.54760 * 304.61071 * 12 11 10 14 14 H 1.08994 * 109.33431 * 169.06560 * 13 12 11 15 15 C 1.54180 * 110.50534 * 289.39523 * 13 12 11 16 16 N 1.46932 * 106.26243 * 151.09692 * 15 13 12 17 17 C 1.36933 * 125.38041 * 162.18608 * 16 15 13 18 18 H 1.08005 * 119.99913 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00345 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00027 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00152 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47421 * 89.99515 * 21 19 17 23 23 H 1.48503 * 109.47043 * 209.99533 * 21 19 17 24 24 H 1.48504 * 109.46959 * 329.99245 * 21 19 17 25 25 C 1.46815 * 109.24552 * 342.14534 * 16 15 13 26 26 C 1.44103 * 116.62950 * 183.38895 * 9 7 6 27 27 H 1.09002 * 109.10597 * 73.86577 * 26 9 7 28 28 C 1.37936 * 119.92738 * 179.73722 * 2 1 3 29 29 H 1.08994 * 109.47347 * 89.99618 * 1 2 3 30 30 H 1.09000 * 109.46872 * 329.98945 * 1 2 3 31 31 H 1.09005 * 109.46762 * 209.99783 * 1 2 3 32 32 H 1.08005 * 119.85055 * 0.02562 * 3 2 1 33 33 H 1.08009 * 119.92597 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.07562 * 179.97438 * 5 4 3 35 35 H 1.09003 * 108.84846 * 275.42559 * 10 9 7 36 36 H 1.09006 * 108.84654 * 33.88953 * 10 9 7 37 37 H 1.08999 * 108.98184 * 163.39795 * 11 10 9 38 38 H 1.09001 * 108.98490 * 282.11676 * 11 10 9 39 39 H 1.08998 * 108.67266 * 65.66751 * 12 11 10 40 40 H 1.09002 * 108.66796 * 183.56342 * 12 11 10 41 41 H 1.09001 * 110.09779 * 270.29182 * 15 13 12 42 42 H 1.09001 * 110.10290 * 31.83442 * 15 13 12 43 43 H 0.96993 * 119.99908 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.84382 * 120.40499 * 25 16 15 45 45 H 1.09002 * 109.84217 * 241.41571 * 25 16 15 46 46 H 1.07997 * 120.07251 * 359.96760 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 0.0005 5 6 4.2812 0.0194 0.0005 6 6 3.5911 -1.1936 0.0005 7 6 4.3352 -2.4711 -0.0001 8 8 3.9773 -3.3827 -0.7201 9 7 5.4105 -2.6250 0.7979 10 6 5.7233 -1.5260 1.6824 11 6 6.4914 -1.9671 2.9130 12 6 7.5756 -2.9674 2.5755 13 6 7.0678 -4.1802 1.8388 14 1 7.9143 -4.7540 1.4617 15 6 6.2272 -5.0692 2.7769 16 7 5.2489 -5.7578 1.9238 17 6 4.5443 -6.8793 2.2715 18 1 4.6888 -7.3282 3.2432 19 6 3.6451 -7.4399 1.3749 20 7 3.4694 -6.8932 0.1905 21 14 2.6845 -8.9702 1.8490 22 1 1.4087 -8.5729 2.4969 23 1 2.3935 -9.7690 0.6314 24 1 3.4876 -9.7853 2.7955 25 6 5.1453 -5.0530 0.6401 26 6 6.1258 -3.8708 0.6846 27 1 6.6952 -3.8721 -0.2449 28 6 2.1952 -1.1954 0.0055 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 0.8899 0.5140 31 1 -0.3633 -0.8901 0.5138 32 1 1.6538 2.1326 0.0004 33 1 4.1136 2.1476 0.0009 34 1 5.3612 0.0276 0.0005 35 1 6.3207 -0.7947 1.1379 36 1 4.7935 -1.0540 2.0000 37 1 6.9477 -1.0934 3.3783 38 1 5.7975 -2.4217 3.6201 39 1 8.3264 -2.4735 1.9587 40 1 8.0490 -3.2945 3.5013 41 1 6.8669 -5.7972 3.2758 42 1 5.7137 -4.4539 3.5156 43 1 2.8408 -7.2847 -0.4359 44 1 5.4109 -5.7269 -0.1744 45 1 4.1288 -4.6850 0.5010 46 1 1.6552 -2.1307 0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049963682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:43 Heat of formation + Delta-G solvation = 37.586030 kcal Electronic energy + Delta-G solvation = -27405.856844 eV Core-core repulsion = 23875.597117 eV Total energy + Delta-G solvation = -3530.259727 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80378 -39.03218 -37.37639 -35.47626 -33.36482 -32.62488 -31.99604 -31.03968 -29.52701 -27.32209 -26.86359 -25.57787 -24.38116 -23.25946 -22.09783 -21.63986 -20.65173 -19.35149 -17.95531 -17.16301 -16.43309 -16.21488 -15.89808 -15.31400 -15.13395 -14.56661 -14.34471 -14.04289 -13.96195 -13.74507 -13.68303 -13.50221 -13.17126 -12.81008 -12.48771 -12.27371 -12.22365 -12.06650 -11.62968 -11.48686 -11.29289 -11.05379 -10.96302 -10.90742 -10.71635 -10.55965 -10.27708 -10.21180 -9.97184 -9.86063 -9.56419 -9.05360 -8.80791 -8.64276 -8.33562 -7.89823 -6.61226 -5.51518 -2.88170 1.07229 1.37057 3.12241 3.43187 3.48010 3.52206 3.54976 3.89108 4.61346 4.65085 4.75693 4.82340 4.94065 4.97428 5.06806 5.12986 5.23974 5.27702 5.37120 5.46195 5.55237 5.58748 5.60881 5.71203 5.72738 5.76141 5.87873 5.96352 5.98800 6.02436 6.08663 6.12397 6.26117 6.27433 6.34887 6.44413 6.49651 6.54926 6.65353 6.77095 6.84870 6.92579 7.18332 7.66486 7.83405 7.92232 8.21287 8.47153 8.74298 9.38142 9.99266 10.64151 11.56475 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.005135 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.544771 B = 5451.687531 C = 7102.957679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.109 4.109 4 C -0.126 4.126 5 C -0.102 4.102 6 C -0.111 4.111 7 C 0.534 3.466 8 O -0.489 6.489 9 N -0.583 5.583 10 C 0.116 3.884 11 C -0.129 4.129 12 C -0.101 4.101 13 C -0.102 4.102 14 H 0.080 0.920 15 C 0.142 3.858 16 N -0.607 5.607 17 C -0.235 4.235 18 H 0.075 0.925 19 C -0.006 4.006 20 N -0.907 5.907 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.162 3.838 26 C 0.131 3.869 27 H 0.057 0.943 28 C -0.068 4.068 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.014 0.986 43 H 0.251 0.749 44 H 0.051 0.949 45 H 0.090 0.910 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.841 19.278 1.977 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.127 4.127 4 C -0.144 4.144 5 C -0.120 4.120 6 C -0.114 4.114 7 C 0.321 3.679 8 O -0.363 6.363 9 N -0.317 5.317 10 C -0.007 4.007 11 C -0.167 4.167 12 C -0.139 4.139 13 C -0.122 4.122 14 H 0.098 0.902 15 C 0.016 3.984 16 N -0.334 5.334 17 C -0.363 4.363 18 H 0.093 0.907 19 C -0.203 4.203 20 N -0.553 5.553 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.038 3.962 26 C 0.027 3.973 27 H 0.075 0.925 28 C -0.087 4.087 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.032 0.968 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.556 18.599 1.495 18.834 hybrid contribution -0.395 -0.779 0.292 0.921 sum 2.161 17.820 1.787 18.039 Atomic orbital electron populations 1.20797 0.90914 1.02892 1.02477 1.19871 0.96308 0.92803 1.00313 1.21135 0.94304 0.97375 0.99883 1.21019 0.94193 0.97751 1.01392 1.21478 1.00271 0.91473 0.98788 1.20103 0.94375 0.93643 1.03328 1.18499 0.80582 0.87037 0.81801 1.90913 1.66124 1.39456 1.39803 1.46571 1.29456 1.16658 1.39018 1.21009 0.99900 0.88612 0.91203 1.21149 0.98521 0.99428 0.97583 1.20483 0.97564 0.95454 1.00414 1.21309 0.98020 0.96583 0.96250 0.90204 1.21368 0.90893 0.93198 0.92970 1.44418 1.45997 1.29891 1.13127 1.18965 1.16694 1.01213 0.99427 0.90747 1.24839 0.99876 0.99180 0.96394 1.70027 1.38261 1.40508 1.06507 0.86208 0.80105 0.82894 0.77058 1.21768 1.21729 1.20818 1.21879 0.98666 0.87865 0.87791 1.21128 0.94662 0.84672 0.96838 0.92547 1.21179 0.92680 0.98393 0.96449 0.91068 0.91602 0.91205 0.86058 0.85772 0.85171 0.92800 0.90799 0.90868 0.91183 0.92522 0.91565 0.95087 0.96838 0.93787 0.93131 0.89242 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 2 C -0.09 -1.14 5.87 -104.68 -0.61 -1.75 16 3 C -0.11 -1.14 9.69 -39.49 -0.38 -1.52 16 4 C -0.13 -1.29 10.03 -39.64 -0.40 -1.69 16 5 C -0.10 -1.25 7.74 -39.19 -0.30 -1.56 16 6 C -0.11 -1.77 4.74 -104.97 -0.50 -2.27 16 7 C 0.53 10.58 6.65 -12.33 -0.08 10.50 16 8 O -0.49 -12.03 13.78 5.32 0.07 -11.96 16 9 N -0.58 -10.51 3.09 -171.45 -0.53 -11.04 16 10 C 0.12 1.56 4.69 -5.81 -0.03 1.53 16 11 C -0.13 -1.60 5.83 -28.27 -0.16 -1.77 16 12 C -0.10 -1.34 5.17 -28.72 -0.15 -1.49 16 13 C -0.10 -1.81 3.05 -91.58 -0.28 -2.09 16 14 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 15 C 0.14 3.06 6.65 -3.19 -0.02 3.04 16 16 N -0.61 -16.44 3.39 -171.51 -0.58 -17.02 16 17 C -0.23 -6.88 10.25 -15.06 -0.15 -7.04 16 18 H 0.07 2.10 7.83 -52.48 -0.41 1.69 16 19 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 20 N -0.91 -28.45 10.26 55.49 0.57 -27.88 16 21 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.16 4.29 4.12 -3.53 -0.01 4.28 16 26 C 0.13 2.67 3.17 -69.30 -0.22 2.45 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 C -0.07 -1.05 9.32 -39.19 -0.37 -1.42 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.13 1.40 5.76 -52.49 -0.30 1.09 16 35 H 0.05 0.60 6.33 -51.93 -0.33 0.27 16 36 H 0.07 0.98 6.14 -51.93 -0.32 0.66 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.99 7.00 -51.93 -0.36 0.62 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.01 0.30 6.69 -51.93 -0.35 -0.05 16 43 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.05 1.52 7.36 -51.93 -0.38 1.14 16 45 H 0.09 2.66 4.38 -52.02 -0.23 2.43 16 46 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -35.01 350.98 -10.49 -45.50 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.88 Total: 0.84 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.41 Total: -1.81 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.54 Total: -55.94 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.07 Total: -11.96 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.01 -10.49 -45.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049963682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.088 kcal (2) G-P(sol) polarization free energy of solvation -35.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds