Wall clock time and date at job start Fri Apr 10 2020 23:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38383 * 119.92824 * 2 1 4 4 C 1.38331 * 120.29191 * 179.97438 * 3 2 1 5 5 C 1.37977 * 120.14945 * 0.02626 * 4 3 2 6 6 C 1.39555 * 119.84865 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.14299 * 179.97438 * 6 5 4 8 8 O 1.21556 * 120.00604 * 223.15333 * 7 6 5 9 9 N 1.34785 * 119.99854 * 43.15725 * 7 6 5 10 10 C 1.44502 * 116.63011 * 3.64151 * 9 7 6 11 11 C 1.51624 * 112.65561 * 154.60500 * 10 9 7 12 12 C 1.51330 * 111.97842 * 42.75854 * 11 10 9 13 13 C 1.50712 * 113.54760 * 304.61071 * 12 11 10 14 14 H 1.08994 * 109.33431 * 169.06560 * 13 12 11 15 15 C 1.54180 * 110.50534 * 289.39523 * 13 12 11 16 16 N 1.46932 * 106.26243 * 151.09692 * 15 13 12 17 17 C 1.36933 * 125.38041 * 162.18608 * 16 15 13 18 18 H 1.08005 * 119.99913 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00345 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00027 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00152 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47421 * 89.99515 * 21 19 17 23 23 H 1.48503 * 109.47043 * 209.99533 * 21 19 17 24 24 H 1.48504 * 109.46959 * 329.99245 * 21 19 17 25 25 C 1.46815 * 109.24552 * 342.14534 * 16 15 13 26 26 C 1.44103 * 116.62950 * 183.38895 * 9 7 6 27 27 H 1.09002 * 109.10597 * 73.86577 * 26 9 7 28 28 C 1.37936 * 119.92738 * 179.73722 * 2 1 3 29 29 H 1.08994 * 109.47347 * 89.99618 * 1 2 3 30 30 H 1.09000 * 109.46872 * 329.98945 * 1 2 3 31 31 H 1.09005 * 109.46762 * 209.99783 * 1 2 3 32 32 H 1.08005 * 119.85055 * 0.02562 * 3 2 1 33 33 H 1.08009 * 119.92597 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.07562 * 179.97438 * 5 4 3 35 35 H 1.09003 * 108.84846 * 275.42559 * 10 9 7 36 36 H 1.09006 * 108.84654 * 33.88953 * 10 9 7 37 37 H 1.08999 * 108.98184 * 163.39795 * 11 10 9 38 38 H 1.09001 * 108.98490 * 282.11676 * 11 10 9 39 39 H 1.08998 * 108.67266 * 65.66751 * 12 11 10 40 40 H 1.09002 * 108.66796 * 183.56342 * 12 11 10 41 41 H 1.09001 * 110.09779 * 270.29182 * 15 13 12 42 42 H 1.09001 * 110.10290 * 31.83442 * 15 13 12 43 43 H 0.96993 * 119.99908 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.84382 * 120.40499 * 25 16 15 45 45 H 1.09002 * 109.84217 * 241.41571 * 25 16 15 46 46 H 1.07997 * 120.07251 * 359.96760 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 0.0005 5 6 4.2812 0.0194 0.0005 6 6 3.5911 -1.1936 0.0005 7 6 4.3352 -2.4711 -0.0001 8 8 3.9773 -3.3827 -0.7201 9 7 5.4105 -2.6250 0.7979 10 6 5.7233 -1.5260 1.6824 11 6 6.4914 -1.9671 2.9130 12 6 7.5756 -2.9674 2.5755 13 6 7.0678 -4.1802 1.8388 14 1 7.9143 -4.7540 1.4617 15 6 6.2272 -5.0692 2.7769 16 7 5.2489 -5.7578 1.9238 17 6 4.5443 -6.8793 2.2715 18 1 4.6888 -7.3282 3.2432 19 6 3.6451 -7.4399 1.3749 20 7 3.4694 -6.8932 0.1905 21 14 2.6845 -8.9702 1.8490 22 1 1.4087 -8.5729 2.4969 23 1 2.3935 -9.7690 0.6314 24 1 3.4876 -9.7853 2.7955 25 6 5.1453 -5.0530 0.6401 26 6 6.1258 -3.8708 0.6846 27 1 6.6952 -3.8721 -0.2449 28 6 2.1952 -1.1954 0.0055 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 0.8899 0.5140 31 1 -0.3633 -0.8901 0.5138 32 1 1.6538 2.1326 0.0004 33 1 4.1136 2.1476 0.0009 34 1 5.3612 0.0276 0.0005 35 1 6.3207 -0.7947 1.1379 36 1 4.7935 -1.0540 2.0000 37 1 6.9477 -1.0934 3.3783 38 1 5.7975 -2.4217 3.6201 39 1 8.3264 -2.4735 1.9587 40 1 8.0490 -3.2945 3.5013 41 1 6.8669 -5.7972 3.2758 42 1 5.7137 -4.4539 3.5156 43 1 2.8408 -7.2847 -0.4359 44 1 5.4109 -5.7269 -0.1744 45 1 4.1288 -4.6850 0.5010 46 1 1.6552 -2.1307 0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049963682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:42 Heat of formation + Delta-G solvation = 14.853159 kcal Electronic energy + Delta-G solvation = -27406.842615 eV Core-core repulsion = 23875.597117 eV Total energy + Delta-G solvation = -3531.245498 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.22313 -40.18713 -38.86341 -37.12697 -34.88465 -33.83697 -33.59972 -32.18482 -31.29545 -28.91086 -27.88439 -27.29667 -25.97068 -24.53533 -23.45718 -22.64103 -22.48375 -20.75444 -19.36870 -18.93399 -17.93577 -17.44282 -17.18311 -17.05276 -16.30312 -16.29263 -15.76430 -15.47637 -15.30786 -15.12954 -14.76174 -14.60663 -14.41559 -14.12221 -13.94785 -13.75144 -13.69708 -13.09142 -13.08101 -12.95694 -12.86356 -12.68248 -12.52917 -12.28945 -12.14267 -12.10997 -11.87057 -11.74734 -11.62775 -11.46549 -11.33982 -10.81341 -10.39356 -9.86307 -9.58147 -9.44965 -8.82971 -7.79717 -5.20379 0.03052 0.41212 1.38211 1.42352 1.51305 1.72896 2.10771 2.47152 2.82315 3.32721 3.41714 3.66670 3.74136 3.83542 3.88192 3.99676 4.00825 4.02325 4.06432 4.18734 4.40125 4.42147 4.51534 4.60098 4.66329 4.69055 4.75623 4.80145 4.82842 4.89797 4.93202 4.97523 4.99138 5.13965 5.18511 5.25998 5.35981 5.41065 5.43653 5.44153 5.47530 5.53165 5.61112 5.81019 6.01409 6.05721 6.25184 6.46839 7.07718 7.25864 7.80745 8.43355 9.26054 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.005135 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.544771 B = 5451.687531 C = 7102.957679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.097 4.097 4 C -0.111 4.111 5 C -0.095 4.095 6 C -0.136 4.136 7 C 0.524 3.476 8 O -0.559 6.559 9 N -0.580 5.580 10 C 0.105 3.895 11 C -0.127 4.127 12 C -0.097 4.097 13 C -0.088 4.088 14 H 0.086 0.914 15 C 0.136 3.864 16 N -0.632 5.632 17 C -0.249 4.249 18 H 0.084 0.916 19 C -0.071 4.071 20 N -0.942 5.942 21 Si 0.979 3.021 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.262 1.262 25 C 0.175 3.825 26 C 0.141 3.859 27 H 0.052 0.948 28 C -0.101 4.101 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.161 0.839 33 H 0.170 0.830 34 H 0.151 0.849 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.039 0.961 42 H 0.019 0.981 43 H 0.241 0.759 44 H -0.007 1.007 45 H 0.052 0.948 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.560 23.703 4.125 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.115 4.115 4 C -0.128 4.128 5 C -0.113 4.113 6 C -0.139 4.139 7 C 0.313 3.687 8 O -0.438 6.438 9 N -0.312 5.312 10 C -0.016 4.016 11 C -0.164 4.164 12 C -0.135 4.135 13 C -0.107 4.107 14 H 0.104 0.896 15 C 0.011 3.989 16 N -0.359 5.359 17 C -0.378 4.378 18 H 0.102 0.898 19 C -0.264 4.264 20 N -0.591 5.591 21 Si 0.807 3.193 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.187 1.187 25 C 0.050 3.950 26 C 0.036 3.964 27 H 0.070 0.930 28 C -0.120 4.120 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.179 0.821 33 H 0.187 0.813 34 H 0.169 0.831 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.140 0.860 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.057 0.943 42 H 0.037 0.963 43 H 0.050 0.950 44 H 0.011 0.989 45 H 0.070 0.930 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.323 23.073 3.716 23.767 hybrid contribution -0.957 -2.082 -0.361 2.319 sum 3.366 20.991 3.355 21.523 Atomic orbital electron populations 1.20854 0.89478 1.03600 1.03136 1.20127 0.97514 0.92315 0.99705 1.21625 0.94849 0.97720 0.97257 1.21525 0.94222 0.98432 0.98625 1.21677 1.01274 0.90482 0.97883 1.19873 0.94212 0.93080 1.06726 1.19334 0.80717 0.87867 0.80806 1.90875 1.67870 1.42261 1.42801 1.46667 1.28612 1.16683 1.39216 1.21442 1.01083 0.87545 0.91519 1.21224 0.97810 1.00932 0.96436 1.20517 0.98306 0.93467 1.01199 1.21324 0.96640 0.98389 0.94394 0.89553 1.21620 0.90354 0.93700 0.93253 1.44769 1.47000 1.29910 1.14177 1.19446 1.16676 1.02010 0.99658 0.89846 1.25806 1.01406 1.02770 0.96399 1.70363 1.38859 1.42091 1.07742 0.85072 0.78573 0.78920 0.76736 1.21368 1.22217 1.18666 1.21422 0.98513 0.88974 0.86128 1.20728 0.93502 0.83830 0.98309 0.92994 1.21064 0.93010 0.98420 0.99525 0.90399 0.88669 0.92701 0.82098 0.81270 0.83113 0.88831 0.90498 0.86040 0.93462 0.89519 0.89385 0.94275 0.96288 0.94971 0.98880 0.92990 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 10.01 71.24 0.71 -1.43 16 2 C -0.10 -2.29 5.87 -19.90 -0.12 -2.41 16 3 C -0.10 -1.62 9.69 22.33 0.22 -1.40 16 4 C -0.11 -1.72 10.03 22.23 0.22 -1.50 16 5 C -0.10 -2.07 7.74 22.53 0.17 -1.90 16 6 C -0.14 -4.47 4.74 -20.09 -0.10 -4.56 16 7 C 0.52 22.31 6.65 86.78 0.58 22.89 16 8 O -0.56 -30.91 13.78 -3.89 -0.05 -30.96 16 9 N -0.58 -21.28 3.09 -814.60 -2.52 -23.80 16 10 C 0.11 2.53 4.69 86.30 0.40 2.94 16 11 C -0.13 -2.62 5.83 29.60 0.17 -2.44 16 12 C -0.10 -2.17 5.17 29.31 0.15 -2.02 16 13 C -0.09 -3.04 3.05 -11.42 -0.03 -3.07 16 14 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 15 C 0.14 5.88 6.65 86.70 0.58 6.46 16 16 N -0.63 -36.10 3.39 -696.54 -2.36 -38.46 16 17 C -0.25 -15.30 10.25 84.03 0.86 -14.44 16 18 H 0.08 4.82 7.83 -2.91 -0.02 4.80 16 19 C -0.07 -4.44 5.48 84.86 0.47 -3.97 16 20 N -0.94 -64.26 10.26 21.65 0.22 -64.03 16 21 Si 0.98 49.85 29.55 68.60 2.03 51.88 16 22 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 23 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 24 H -0.26 -12.35 7.11 99.48 0.71 -11.65 16 25 C 0.17 10.08 4.12 86.54 0.36 10.44 16 26 C 0.14 6.02 3.17 45.38 0.14 6.17 16 27 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 28 C -0.10 -3.37 9.32 22.53 0.21 -3.16 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.21 8.08 -2.39 -0.02 1.19 16 31 H 0.05 1.17 8.08 -2.38 -0.02 1.15 16 32 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.15 2.58 5.76 -2.91 -0.02 2.56 16 35 H 0.09 1.58 6.33 -2.39 -0.02 1.56 16 36 H 0.08 1.85 6.14 -2.38 -0.01 1.84 16 37 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.20 7.00 -2.39 -0.02 1.19 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.68 8.11 -2.39 -0.02 1.66 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.02 0.82 6.69 -2.39 -0.02 0.81 16 43 H 0.24 16.13 8.31 -92.71 -0.77 15.36 16 44 H -0.01 -0.47 7.36 -2.39 -0.02 -0.49 16 45 H 0.05 3.43 4.38 -3.82 -0.02 3.42 16 46 H 0.09 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -89.47 350.98 3.28 -86.19 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.97 Total: 12.59 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 5.00 Total: 6.60 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -4.66 Total: -126.30 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.05 Total: -30.96 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.03 Total: 51.88 kcal Total: -89.47 3.28 -86.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049963682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.039 kcal (2) G-P(sol) polarization free energy of solvation -89.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds