Wall clock time and date at job start Fri Apr 10 2020 23:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38365 * 119.85315 * 2 1 4 4 C 1.37954 * 120.14780 * 180.02562 * 3 2 1 5 5 C 1.39573 * 119.85094 * 359.97438 * 4 3 2 6 6 C 1.47854 * 120.14580 * 179.97438 * 5 4 3 7 7 O 1.21546 * 119.99423 * 318.18149 * 6 5 4 8 8 N 1.34774 * 119.99853 * 138.18037 * 6 5 4 9 9 C 1.46792 * 119.52506 * 354.16207 * 8 6 5 10 10 C 1.53483 * 107.53425 * 231.97025 * 9 8 6 11 11 C 1.52725 * 108.38796 * 301.72643 * 10 9 8 12 12 C 1.53710 * 110.68581 * 64.12915 * 11 10 9 13 13 H 1.09007 * 112.31674 * 69.81810 * 12 11 10 14 14 C 1.55028 * 107.04781 * 193.95930 * 12 11 10 15 15 N 1.47095 * 107.12956 * 92.24267 * 14 12 11 16 16 C 1.36937 * 125.64804 * 180.14772 * 15 14 12 17 17 H 1.08001 * 119.99772 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00296 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99884 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00273 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47231 * 60.00111 * 20 18 16 22 22 H 1.48497 * 109.46946 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46751 * 299.99689 * 20 18 16 24 24 C 1.48757 * 108.83612 * 0.19294 * 15 14 12 25 25 C 1.45021 * 119.51666 * 174.13520 * 8 6 5 26 26 H 1.09000 * 109.86757 * 12.11449 * 25 8 6 27 27 C 1.39582 * 119.71249 * 0.25182 * 5 4 3 28 28 C 1.37956 * 119.84930 * 359.51646 * 27 5 4 29 29 H 1.09007 * 109.47635 * 89.99552 * 1 2 3 30 30 H 1.09005 * 109.46905 * 209.99475 * 1 2 3 31 31 H 1.09001 * 109.47475 * 329.99085 * 1 2 3 32 32 H 1.08002 * 119.92423 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.07405 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.84252 * 351.47170 * 9 8 6 35 35 H 1.09001 * 109.84901 * 112.39099 * 9 8 6 36 36 H 1.09001 * 109.68403 * 61.45070 * 10 9 8 37 37 H 1.08999 * 109.67735 * 181.96890 * 10 9 8 38 38 H 1.09006 * 109.19066 * 184.20398 * 11 10 9 39 39 H 1.09005 * 109.19881 * 303.52358 * 11 10 9 40 40 H 1.09003 * 109.90508 * 211.62166 * 14 12 11 41 41 H 1.08993 * 109.90324 * 332.86805 * 14 12 11 42 42 H 0.96995 * 120.00553 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.47307 * 264.91387 * 24 15 14 44 44 H 1.08995 * 110.92245 * 142.02805 * 24 15 14 45 45 H 1.08002 * 120.07231 * 179.72448 * 27 5 4 46 46 H 1.08002 * 119.92224 * 180.23137 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2071 -0.0005 5 6 4.2761 0.0002 -0.0005 6 6 5.7547 0.0002 -0.0017 7 8 6.3617 0.7844 -0.7044 8 7 6.4291 -0.8693 0.7765 9 6 5.6911 -1.7226 1.7156 10 6 6.3360 -1.5544 3.0981 11 6 7.8091 -1.9436 2.9931 12 6 8.5589 -0.9836 2.0556 13 1 8.6669 0.0130 2.4839 14 6 9.9228 -1.6427 1.7263 15 7 9.7412 -2.4200 0.4907 16 6 10.7088 -3.1578 -0.1375 17 1 11.7062 -3.2024 0.2742 18 6 10.4076 -3.8485 -1.3033 19 7 9.1921 -3.7937 -1.8053 20 14 11.7272 -4.8556 -2.1598 21 1 12.2233 -5.9083 -1.2373 22 1 11.1551 -5.4905 -3.3742 23 1 12.8524 -3.9682 -2.5491 24 6 8.3334 -2.2728 0.0332 25 6 7.8735 -0.9487 0.6734 26 1 8.2503 -0.1061 0.0937 27 6 3.5752 -1.2069 -0.0053 28 6 2.1957 -1.1999 0.0001 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 1.6520 2.1333 -0.0004 33 1 4.1116 2.1445 -0.0001 34 1 4.6466 -1.4130 1.7544 35 1 5.7568 -2.7638 1.3997 36 1 6.2527 -0.5157 3.4182 37 1 5.8352 -2.2016 3.8180 38 1 8.2625 -1.9007 3.9835 39 1 7.8846 -2.9606 2.6083 40 1 10.6795 -0.8733 1.5729 41 1 10.2216 -2.3036 2.5398 42 1 8.9814 -4.2766 -2.6197 43 1 7.7261 -3.1022 0.3956 44 1 8.2820 -2.2084 -1.0536 45 1 4.1117 -2.1442 -0.0098 46 1 1.6522 -2.1332 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050190403.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:45 Heat of formation + Delta-G solvation = 2.975071 kcal Electronic energy + Delta-G solvation = -26886.060668 eV Core-core repulsion = 23354.300097 eV Total energy + Delta-G solvation = -3531.760571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94846 -40.23340 -39.04136 -36.90111 -34.72760 -33.65546 -33.48227 -32.01577 -31.09177 -29.36467 -28.03840 -27.19376 -25.61818 -23.88690 -23.35496 -23.13242 -22.01285 -21.30918 -19.67913 -18.94032 -18.50874 -17.49316 -16.96386 -16.55897 -16.35548 -16.03081 -15.72892 -15.58075 -15.18350 -14.81544 -14.69215 -14.62099 -14.47102 -14.37519 -13.98723 -13.80247 -13.57592 -13.26505 -13.11377 -12.95748 -12.82888 -12.74392 -12.53030 -12.36195 -12.20628 -12.12254 -11.93997 -11.75779 -11.69006 -11.51968 -11.19039 -10.91985 -10.76244 -9.91872 -9.73603 -9.51837 -8.91554 -7.80395 -5.25260 -0.05459 0.40371 1.43527 1.47826 1.53991 1.65979 1.92619 2.47991 2.75590 3.30131 3.39334 3.66088 3.67581 3.86718 3.90484 3.97566 4.00169 4.02436 4.03939 4.16426 4.37340 4.42002 4.46209 4.51732 4.52788 4.67296 4.78683 4.79803 4.82542 4.87894 4.91598 4.93014 5.03958 5.10016 5.14884 5.22754 5.27521 5.33468 5.37657 5.39833 5.46677 5.49592 5.60953 5.61830 5.76149 5.97349 6.20267 6.38045 7.01965 7.07900 7.71673 8.36827 9.21938 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.003703 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.888246 B = 7559.450750 C = 8221.585244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.062 4.062 3 C -0.125 4.125 4 C -0.077 4.077 5 C -0.150 4.150 6 C 0.546 3.454 7 O -0.590 6.590 8 N -0.581 5.581 9 C 0.094 3.906 10 C -0.122 4.122 11 C -0.105 4.105 12 C -0.094 4.094 13 H 0.100 0.900 14 C 0.135 3.865 15 N -0.626 5.626 16 C -0.240 4.240 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.950 5.950 20 Si 0.983 3.017 21 H -0.273 1.273 22 H -0.294 1.294 23 H -0.279 1.279 24 C 0.174 3.826 25 C 0.126 3.874 26 H 0.061 0.939 27 C -0.089 4.089 28 C -0.125 4.125 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.021 0.979 41 H 0.041 0.959 42 H 0.245 0.755 43 H 0.003 0.997 44 H 0.055 0.945 45 H 0.128 0.872 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.720 6.292 11.283 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.062 4.062 3 C -0.143 4.143 4 C -0.096 4.096 5 C -0.153 4.153 6 C 0.337 3.663 7 O -0.472 6.472 8 N -0.310 5.310 9 C -0.027 4.027 10 C -0.160 4.160 11 C -0.143 4.143 12 C -0.113 4.113 13 H 0.118 0.882 14 C 0.010 3.990 15 N -0.353 5.353 16 C -0.369 4.369 17 H 0.102 0.898 18 C -0.261 4.261 19 N -0.600 5.600 20 Si 0.811 3.189 21 H -0.199 1.199 22 H -0.221 1.221 23 H -0.205 1.205 24 C 0.048 3.952 25 C 0.020 3.980 26 H 0.079 0.921 27 C -0.107 4.107 28 C -0.142 4.142 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.171 0.829 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.073 0.927 45 H 0.146 0.854 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -19.343 6.539 10.789 23.094 hybrid contribution 1.456 -0.620 -1.120 1.939 sum -17.887 5.919 9.670 21.178 Atomic orbital electron populations 1.20921 0.88348 1.04403 1.03495 1.20529 0.98068 0.92465 0.95180 1.21275 0.92546 0.99449 1.00995 1.21244 0.95200 0.96365 0.96750 1.19751 0.90684 0.96234 1.08596 1.19140 0.88693 0.79590 0.78912 1.90722 1.71105 1.41608 1.43785 1.47389 1.06212 1.38332 1.39055 1.22412 0.97149 0.94251 0.88872 1.21886 0.94996 1.03200 0.95887 1.21589 0.95789 0.97752 0.99134 1.22563 0.94530 0.99878 0.94362 0.88186 1.21698 0.95451 0.93381 0.88453 1.44962 1.07834 1.56319 1.26156 1.19452 0.91547 1.21133 1.04749 0.89757 1.25687 0.99020 1.02291 0.99101 1.70097 1.19955 1.47108 1.22812 0.85083 0.77930 0.78392 0.77507 1.19909 1.22060 1.20504 1.21717 0.83807 0.91115 0.98535 1.21574 0.79763 0.99010 0.97614 0.92104 1.21477 0.95498 0.96439 0.97306 1.21300 0.92689 0.99428 1.00804 0.90031 0.89916 0.89974 0.82851 0.86027 0.86795 0.91663 0.90722 0.87493 0.89560 0.93476 0.96090 0.94147 0.94498 0.97946 0.92657 0.85381 0.82768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.00 71.23 0.71 -0.28 16 2 C -0.06 -0.98 5.89 -19.81 -0.12 -1.09 16 3 C -0.12 -2.25 9.68 22.23 0.22 -2.03 16 4 C -0.08 -1.93 9.66 22.52 0.22 -1.71 16 5 C -0.15 -4.42 5.00 -20.09 -0.10 -4.52 16 6 C 0.55 21.14 7.26 86.79 0.63 21.77 16 7 O -0.59 -28.23 16.26 -3.86 -0.06 -28.29 16 8 N -0.58 -21.15 2.73 -798.37 -2.18 -23.34 16 9 C 0.09 2.54 4.63 86.49 0.40 2.94 16 10 C -0.12 -2.74 6.10 30.66 0.19 -2.56 16 11 C -0.11 -3.02 4.66 30.74 0.14 -2.87 16 12 C -0.09 -3.34 3.64 -9.41 -0.03 -3.37 16 13 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 14 C 0.14 5.77 6.62 86.96 0.58 6.35 16 15 N -0.63 -33.70 3.43 -688.56 -2.36 -36.06 16 16 C -0.24 -13.93 10.28 84.03 0.86 -13.07 16 17 H 0.08 4.64 7.83 -2.91 -0.02 4.62 16 18 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 19 N -0.95 -59.23 10.10 21.65 0.22 -59.01 16 20 Si 0.98 47.18 29.55 68.60 2.03 49.20 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 C 0.17 9.17 5.09 86.31 0.44 9.61 16 25 C 0.13 5.46 3.02 46.09 0.14 5.60 16 26 H 0.06 3.06 6.92 -2.39 -0.02 3.04 16 27 C -0.09 -2.14 7.39 22.53 0.17 -1.97 16 28 C -0.12 -2.20 9.68 22.23 0.22 -1.99 16 29 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.08 0.52 8.08 -2.38 -0.02 0.51 16 31 H 0.08 0.51 8.08 -2.39 -0.02 0.50 16 32 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.11 2.51 4.85 -2.38 -0.01 2.50 16 35 H 0.07 1.88 7.54 -2.39 -0.02 1.86 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.05 1.62 7.22 -2.38 -0.02 1.61 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.04 1.63 7.75 -2.39 -0.02 1.61 16 42 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 43 H 0.00 0.14 6.91 -2.38 -0.02 0.13 16 44 H 0.06 3.47 5.97 -2.39 -0.01 3.46 16 45 H 0.13 3.16 6.71 -2.91 -0.02 3.14 16 46 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -77.69 356.67 3.73 -73.96 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.97 Total: 16.30 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 5.12 Total: 7.23 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -4.32 Total: -118.41 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.06 Total: -28.29 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.20 kcal Total: -77.69 3.73 -73.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050190403.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.938 kcal (2) G-P(sol) polarization free energy of solvation -77.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds