Wall clock time and date at job start Fri Apr 10 2020 23:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37979 * 120.07820 * 2 1 4 4 C 1.38336 * 120.14679 * 179.97438 * 3 2 1 5 5 C 1.38380 * 120.29467 * 0.02609 * 4 3 2 6 6 C 1.37944 * 120.14226 * 359.73889 * 5 4 3 7 7 C 1.39563 * 120.07017 * 179.97438 * 2 1 3 8 8 C 1.47842 * 120.14331 * 0.02562 * 7 2 1 9 9 O 1.21546 * 120.00267 * 39.08532 * 8 7 2 10 10 N 1.34778 * 119.99562 * 219.08075 * 8 7 2 11 11 C 1.47670 * 134.45438 * 184.93275 * 10 8 7 12 12 C 1.53508 * 85.97544 * 204.33551 * 11 10 8 13 13 C 1.47664 * 134.45921 * 4.95930 * 10 8 7 14 14 C 1.52674 * 113.57467 * 91.01726 * 12 11 10 15 15 C 1.53338 * 109.11365 * 73.80976 * 14 12 11 16 16 N 1.46885 * 108.76127 * 52.40443 * 15 14 12 17 17 C 1.36941 * 120.46247 * 124.46896 * 16 15 14 18 18 H 1.07995 * 120.00441 * 326.19915 * 17 16 15 19 19 C 1.38810 * 119.99674 * 146.46975 * 17 16 15 20 20 N 1.31627 * 120.00251 * 344.68011 * 19 17 16 21 21 Si 1.86802 * 120.00106 * 164.67547 * 19 17 16 22 22 H 1.48500 * 109.46672 * 60.00176 * 21 19 17 23 23 H 1.48491 * 109.47281 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46836 * 300.00362 * 21 19 17 25 25 C 1.46880 * 119.06910 * 304.74682 * 16 15 14 26 26 C 1.52676 * 113.56211 * 222.23060 * 12 11 10 27 27 H 1.09000 * 109.47233 * 264.30153 * 1 2 3 28 28 H 1.09005 * 109.47005 * 24.30293 * 1 2 3 29 29 H 1.09000 * 109.47219 * 144.29564 * 1 2 3 30 30 H 1.08001 * 119.92229 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.85205 * 180.02562 * 4 3 2 32 32 H 1.07989 * 119.93037 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.07105 * 180.27391 * 6 5 4 34 34 H 1.09000 * 113.79034 * 90.06663 * 11 10 8 35 35 H 1.09003 * 113.89451 * 318.61387 * 11 10 8 36 36 H 1.09000 * 113.78825 * 41.39308 * 13 10 8 37 37 H 1.08995 * 113.79112 * 269.92865 * 13 10 8 38 38 H 1.08997 * 109.52700 * 313.92243 * 14 12 11 39 39 H 1.08993 * 109.59252 * 193.74231 * 14 12 11 40 40 H 1.08999 * 109.58752 * 292.62718 * 15 14 12 41 41 H 1.08992 * 109.58915 * 172.19233 * 15 14 12 42 42 H 0.96995 * 119.99781 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.58878 * 175.03574 * 25 16 15 44 44 H 1.08999 * 109.59085 * 295.47420 * 25 16 15 45 45 H 1.09004 * 109.52725 * 46.08167 * 26 12 11 46 46 H 1.08996 * 109.52810 * 166.22221 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1956 0.0005 5 6 4.2813 0.0017 0.0005 6 6 3.6022 -1.1990 0.0054 7 6 2.2063 -1.2078 0.0005 8 6 1.4718 -2.4909 0.0005 9 8 0.4611 -2.6126 -0.6635 10 7 1.9232 -3.5256 0.7368 11 6 1.5138 -4.9350 0.9003 12 6 2.1920 -4.8597 2.2753 13 6 3.0250 -3.7042 1.7036 14 6 1.2490 -4.4364 3.3990 15 6 0.3132 -5.6036 3.7354 16 7 1.1243 -6.8018 3.9882 17 6 1.0010 -7.4875 5.1671 18 1 0.7852 -6.9551 6.0816 19 6 1.1590 -8.8664 5.1877 20 7 1.1257 -9.5496 4.0631 21 14 1.4192 -9.7527 6.8114 22 1 0.2532 -9.5119 7.6990 23 1 1.5602 -11.2099 6.5630 24 1 2.6514 -9.2405 7.4629 25 6 2.0739 -7.2505 2.9614 26 6 3.0171 -6.0978 2.6175 27 1 -0.3634 -0.1020 1.0226 28 1 -0.3633 0.9366 -0.4230 29 1 -0.3634 -0.8345 -0.5997 30 1 1.6585 2.1293 -0.0004 31 1 4.1183 2.1330 0.0010 32 1 5.3612 0.0098 0.0014 33 1 4.1492 -2.1301 0.0099 34 1 2.0025 -5.6182 0.2057 35 1 0.4343 -5.0783 0.9496 36 1 3.1464 -2.8674 2.3914 37 1 3.9627 -4.0217 1.2478 38 1 0.6597 -3.5782 3.0762 39 1 1.8294 -4.1686 4.2818 40 1 -0.3581 -5.7872 2.8965 41 1 -0.2680 -5.3612 4.6250 42 1 1.2365 -10.5131 4.0775 43 1 2.6522 -8.0927 3.3415 44 1 1.5292 -7.5524 2.0669 45 1 3.6339 -6.3726 1.7617 46 1 3.6566 -5.8843 3.4739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050414631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:48 Heat of formation + Delta-G solvation = 44.376513 kcal Electronic energy + Delta-G solvation = -26461.355026 eV Core-core repulsion = 22931.389756 eV Total energy + Delta-G solvation = -3529.965270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.86654 -39.53348 -37.78440 -35.85643 -32.92365 -32.52739 -31.54910 -30.49491 -29.73249 -27.58452 -26.69618 -26.17028 -24.27532 -23.33109 -22.37937 -21.65678 -20.86925 -19.39998 -18.05684 -17.34649 -16.54482 -16.23138 -15.87576 -15.75197 -15.07842 -14.83909 -14.51675 -14.12276 -13.82791 -13.66509 -13.49223 -13.43326 -13.35408 -13.03237 -12.70161 -12.35519 -12.26112 -12.03260 -11.89246 -11.80582 -11.60462 -11.42152 -11.28155 -11.03582 -10.74397 -10.51973 -10.31342 -10.17885 -9.89566 -9.76768 -9.65287 -9.31537 -9.17174 -8.87921 -8.54011 -8.47115 -6.59543 -5.80886 -3.29028 0.78034 1.13421 2.76803 2.88400 3.37019 3.42849 3.43822 3.60133 4.33425 4.47931 4.58703 4.61278 4.65494 4.77121 5.05587 5.08558 5.20453 5.21082 5.37696 5.42800 5.46732 5.49197 5.55696 5.58783 5.63688 5.66010 5.70425 5.87614 5.93587 6.05813 6.07748 6.10170 6.17744 6.20596 6.26646 6.39858 6.44003 6.56357 6.60409 6.65099 6.69273 6.82069 6.96595 7.28757 7.58289 7.79539 7.80138 8.19957 8.47906 9.21030 9.82582 10.42392 11.27299 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.028319 B = 0.002949 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.513578 B = 9491.654593 C = 9670.881614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.030 4.030 3 C -0.131 4.131 4 C -0.097 4.097 5 C -0.135 4.135 6 C -0.081 4.081 7 C -0.126 4.126 8 C 0.578 3.422 9 O -0.539 6.539 10 N -0.632 5.632 11 C 0.118 3.882 12 C -0.073 4.073 13 C 0.102 3.898 14 C -0.108 4.108 15 C 0.147 3.853 16 N -0.589 5.589 17 C -0.259 4.259 18 H 0.061 0.939 19 C 0.009 3.991 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.175 3.825 26 C -0.127 4.127 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.019 0.981 41 H 0.055 0.945 42 H 0.255 0.745 43 H 0.081 0.919 44 H 0.020 0.980 45 H 0.053 0.947 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.841 18.707 -7.674 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.149 4.149 4 C -0.116 4.116 5 C -0.153 4.153 6 C -0.100 4.100 7 C -0.129 4.129 8 C 0.369 3.631 9 O -0.418 6.418 10 N -0.366 5.366 11 C -0.003 4.003 12 C -0.074 4.074 13 C -0.021 4.021 14 C -0.147 4.147 15 C 0.021 3.979 16 N -0.311 5.311 17 C -0.388 4.388 18 H 0.079 0.921 19 C -0.191 4.191 20 N -0.543 5.543 21 Si 0.731 3.269 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.049 3.951 26 C -0.167 4.167 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.038 0.962 45 H 0.072 0.928 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.213 18.591 -8.168 21.236 hybrid contribution 0.391 -0.441 0.736 0.943 sum 6.604 18.151 -7.432 20.695 Atomic orbital electron populations 1.21184 0.90457 1.04479 1.03428 1.19996 0.96693 0.91520 0.94905 1.21036 0.94288 0.97383 1.02156 1.21303 0.94244 0.98224 0.97788 1.21071 1.00087 0.92179 1.01924 1.21318 0.92794 0.98708 0.97158 1.19795 0.93822 0.93107 1.06193 1.17948 0.84103 0.82836 0.78244 1.90688 1.25165 1.82939 1.42981 1.50052 1.32959 1.10802 1.42807 1.23309 1.01833 0.79888 0.95296 1.21973 0.95952 0.95103 0.94359 1.23516 0.91100 0.98387 0.89105 1.21765 0.97778 0.98888 0.96288 1.20894 0.91911 0.86918 0.98203 1.43922 1.41525 1.28362 1.17340 1.19076 1.45469 0.88511 0.85781 0.92098 1.25179 1.00639 0.96634 0.96614 1.70012 1.52519 1.06455 1.25289 0.86402 0.78369 0.78545 0.83598 1.20824 1.21639 1.20954 1.20587 0.90018 0.93248 0.91251 1.22066 0.98454 0.95986 1.00192 0.91136 0.91687 0.87950 0.85523 0.85741 0.85558 0.85577 0.89739 0.89783 0.90269 0.89838 0.93003 0.91777 0.96361 0.92631 0.93543 0.90102 0.96235 0.92826 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.48 36.00 0.34 -1.29 16 2 C -0.03 -0.37 5.91 -104.22 -0.62 -0.98 16 3 C -0.13 -1.26 9.67 -39.64 -0.38 -1.64 16 4 C -0.10 -0.83 10.04 -39.49 -0.40 -1.23 16 5 C -0.13 -1.20 10.03 -39.64 -0.40 -1.60 16 6 C -0.08 -0.88 8.91 -39.18 -0.35 -1.23 16 7 C -0.13 -1.66 5.67 -104.97 -0.60 -2.26 16 8 C 0.58 9.07 7.33 -12.33 -0.09 8.98 16 9 O -0.54 -10.04 15.01 5.32 0.08 -9.96 16 10 N -0.63 -9.21 3.41 -181.37 -0.62 -9.83 16 11 C 0.12 1.83 7.63 -3.15 -0.02 1.81 16 12 C -0.07 -1.11 0.77 -154.42 -0.12 -1.23 16 13 C 0.10 1.26 6.07 -3.16 -0.02 1.24 16 14 C -0.11 -1.80 5.22 -26.72 -0.14 -1.94 16 15 C 0.15 3.02 6.38 -3.66 -0.02 2.99 16 16 N -0.59 -14.16 2.94 -172.51 -0.51 -14.67 16 17 C -0.26 -6.91 9.51 -15.06 -0.14 -7.06 16 18 H 0.06 1.61 7.87 -52.49 -0.41 1.20 16 19 C 0.01 0.24 4.91 -17.43 -0.09 0.16 16 20 N -0.90 -25.56 11.48 55.49 0.64 -24.92 16 21 Si 0.90 21.23 29.58 -169.99 -5.03 16.20 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.17 3.88 5.16 -3.91 -0.02 3.86 16 26 C -0.13 -2.14 5.24 -26.97 -0.14 -2.28 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.60 8.05 -51.93 -0.42 0.19 16 29 H 0.10 1.46 5.40 -51.93 -0.28 1.18 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.13 1.22 6.86 -52.49 -0.36 0.86 16 34 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 35 H 0.08 1.44 7.41 -51.93 -0.38 1.06 16 36 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 38 H 0.05 0.83 8.01 -51.93 -0.42 0.41 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.39 7.49 -51.93 -0.39 0.00 16 41 H 0.06 1.14 7.92 -51.93 -0.41 0.73 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 43 H 0.08 2.03 6.33 -51.93 -0.33 1.70 16 44 H 0.02 0.46 8.07 -51.93 -0.42 0.04 16 45 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -30.86 364.17 -10.31 -41.18 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.16 Total: 0.20 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -3.20 Total: -3.69 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.49 Total: -49.42 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.86 -10.31 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050414631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.555 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds