Wall clock time and date at job start Fri Apr 10 2020 23:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37979 * 120.07820 * 2 1 4 4 C 1.38336 * 120.14679 * 179.97438 * 3 2 1 5 5 C 1.38380 * 120.29467 * 0.02609 * 4 3 2 6 6 C 1.37944 * 120.14226 * 359.73889 * 5 4 3 7 7 C 1.39563 * 120.07017 * 179.97438 * 2 1 3 8 8 C 1.47842 * 120.14331 * 0.02562 * 7 2 1 9 9 O 1.21546 * 120.00267 * 39.08532 * 8 7 2 10 10 N 1.34778 * 119.99562 * 219.08075 * 8 7 2 11 11 C 1.47670 * 134.45438 * 184.93275 * 10 8 7 12 12 C 1.53508 * 85.97544 * 204.33551 * 11 10 8 13 13 C 1.47664 * 134.45921 * 4.95930 * 10 8 7 14 14 C 1.52674 * 113.57467 * 91.01726 * 12 11 10 15 15 C 1.53338 * 109.11365 * 73.80976 * 14 12 11 16 16 N 1.46885 * 108.76127 * 52.40443 * 15 14 12 17 17 C 1.36941 * 120.46247 * 124.46896 * 16 15 14 18 18 H 1.07995 * 120.00441 * 326.19915 * 17 16 15 19 19 C 1.38810 * 119.99674 * 146.46975 * 17 16 15 20 20 N 1.31627 * 120.00251 * 344.68011 * 19 17 16 21 21 Si 1.86802 * 120.00106 * 164.67547 * 19 17 16 22 22 H 1.48500 * 109.46672 * 60.00176 * 21 19 17 23 23 H 1.48491 * 109.47281 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46836 * 300.00362 * 21 19 17 25 25 C 1.46880 * 119.06910 * 304.74682 * 16 15 14 26 26 C 1.52676 * 113.56211 * 222.23060 * 12 11 10 27 27 H 1.09000 * 109.47233 * 264.30153 * 1 2 3 28 28 H 1.09005 * 109.47005 * 24.30293 * 1 2 3 29 29 H 1.09000 * 109.47219 * 144.29564 * 1 2 3 30 30 H 1.08001 * 119.92229 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.85205 * 180.02562 * 4 3 2 32 32 H 1.07989 * 119.93037 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.07105 * 180.27391 * 6 5 4 34 34 H 1.09000 * 113.79034 * 90.06663 * 11 10 8 35 35 H 1.09003 * 113.89451 * 318.61387 * 11 10 8 36 36 H 1.09000 * 113.78825 * 41.39308 * 13 10 8 37 37 H 1.08995 * 113.79112 * 269.92865 * 13 10 8 38 38 H 1.08997 * 109.52700 * 313.92243 * 14 12 11 39 39 H 1.08993 * 109.59252 * 193.74231 * 14 12 11 40 40 H 1.08999 * 109.58752 * 292.62718 * 15 14 12 41 41 H 1.08992 * 109.58915 * 172.19233 * 15 14 12 42 42 H 0.96995 * 119.99781 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.58878 * 175.03574 * 25 16 15 44 44 H 1.08999 * 109.59085 * 295.47420 * 25 16 15 45 45 H 1.09004 * 109.52725 * 46.08167 * 26 12 11 46 46 H 1.08996 * 109.52810 * 166.22221 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1956 0.0005 5 6 4.2813 0.0017 0.0005 6 6 3.6022 -1.1990 0.0054 7 6 2.2063 -1.2078 0.0005 8 6 1.4718 -2.4909 0.0005 9 8 0.4611 -2.6126 -0.6635 10 7 1.9232 -3.5256 0.7368 11 6 1.5138 -4.9350 0.9003 12 6 2.1920 -4.8597 2.2753 13 6 3.0250 -3.7042 1.7036 14 6 1.2490 -4.4364 3.3990 15 6 0.3132 -5.6036 3.7354 16 7 1.1243 -6.8018 3.9882 17 6 1.0010 -7.4875 5.1671 18 1 0.7852 -6.9551 6.0816 19 6 1.1590 -8.8664 5.1877 20 7 1.1257 -9.5496 4.0631 21 14 1.4192 -9.7527 6.8114 22 1 0.2532 -9.5119 7.6990 23 1 1.5602 -11.2099 6.5630 24 1 2.6514 -9.2405 7.4629 25 6 2.0739 -7.2505 2.9614 26 6 3.0171 -6.0978 2.6175 27 1 -0.3634 -0.1020 1.0226 28 1 -0.3633 0.9366 -0.4230 29 1 -0.3634 -0.8345 -0.5997 30 1 1.6585 2.1293 -0.0004 31 1 4.1183 2.1330 0.0010 32 1 5.3612 0.0098 0.0014 33 1 4.1492 -2.1301 0.0099 34 1 2.0025 -5.6182 0.2057 35 1 0.4343 -5.0783 0.9496 36 1 3.1464 -2.8674 2.3914 37 1 3.9627 -4.0217 1.2478 38 1 0.6597 -3.5782 3.0762 39 1 1.8294 -4.1686 4.2818 40 1 -0.3581 -5.7872 2.8965 41 1 -0.2680 -5.3612 4.6250 42 1 1.2365 -10.5131 4.0775 43 1 2.6522 -8.0927 3.3415 44 1 1.5292 -7.5524 2.0669 45 1 3.6339 -6.3726 1.7617 46 1 3.6566 -5.8843 3.4739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050414631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:47 Heat of formation + Delta-G solvation = 27.771526 kcal Electronic energy + Delta-G solvation = -26462.075072 eV Core-core repulsion = 22931.389756 eV Total energy + Delta-G solvation = -3530.685316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.02916 -40.51956 -38.90996 -37.49304 -34.33284 -33.62357 -32.69691 -31.92499 -31.30157 -28.79319 -27.83496 -27.27589 -25.96435 -24.30416 -23.93427 -22.57942 -22.37243 -20.49269 -19.56487 -18.51038 -18.04903 -17.40553 -16.94011 -16.80273 -16.58293 -16.08878 -15.66454 -15.39792 -15.36701 -14.98332 -14.86291 -14.57721 -14.43464 -14.15090 -13.88787 -13.86771 -13.35314 -13.17727 -13.03583 -12.99320 -12.93673 -12.75151 -12.59780 -12.55472 -12.31373 -12.03984 -11.98970 -11.84102 -11.33652 -11.27903 -11.23339 -10.66564 -10.49472 -9.95684 -9.71429 -9.62882 -8.56953 -7.85785 -5.37472 -0.03374 0.40992 1.48762 1.50027 1.57156 1.71364 1.78094 2.52446 2.81153 3.25019 3.32609 3.43417 3.70568 3.81594 3.89308 3.90800 4.03679 4.16690 4.21480 4.34866 4.41272 4.46952 4.50658 4.56487 4.59580 4.68724 4.70009 4.71385 4.76050 4.80473 4.91811 4.92030 5.01838 5.04477 5.13258 5.18329 5.28367 5.34628 5.35578 5.39768 5.51540 5.51943 5.58919 5.68146 5.79138 5.98997 6.44271 6.67061 7.04563 7.19056 7.87960 8.42185 9.19434 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.028319 B = 0.002949 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.513578 B = 9491.654593 C = 9670.881614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 C -0.132 4.132 4 C -0.090 4.090 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.153 4.153 8 C 0.573 3.427 9 O -0.582 6.582 10 N -0.632 5.632 11 C 0.113 3.887 12 C -0.074 4.074 13 C 0.120 3.880 14 C -0.093 4.093 15 C 0.145 3.855 16 N -0.606 5.606 17 C -0.269 4.269 18 H 0.061 0.939 19 C -0.043 4.043 20 N -0.932 5.932 21 Si 0.965 3.035 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.274 1.274 25 C 0.180 3.820 26 C -0.110 4.110 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.003 0.997 41 H 0.049 0.951 42 H 0.250 0.750 43 H 0.047 0.953 44 H -0.004 1.004 45 H 0.082 0.918 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.767 21.568 -7.326 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.053 4.053 3 C -0.150 4.150 4 C -0.108 4.108 5 C -0.149 4.149 6 C -0.104 4.104 7 C -0.155 4.155 8 C 0.365 3.635 9 O -0.465 6.465 10 N -0.365 5.365 11 C -0.009 4.009 12 C -0.075 4.075 13 C -0.001 4.001 14 C -0.132 4.132 15 C 0.019 3.981 16 N -0.330 5.330 17 C -0.399 4.399 18 H 0.078 0.922 19 C -0.239 4.239 20 N -0.577 5.577 21 Si 0.793 3.207 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.200 1.200 25 C 0.055 3.945 26 C -0.150 4.150 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.167 0.833 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.154 0.846 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.021 0.979 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.014 0.986 45 H 0.101 0.899 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.161 21.483 -7.804 24.624 hybrid contribution -0.577 -1.280 0.600 1.527 sum 8.584 20.203 -7.204 23.103 Atomic orbital electron populations 1.21094 0.91168 1.04260 1.02685 1.20154 0.96604 0.92352 0.96217 1.21324 0.95169 0.97183 1.01291 1.21752 0.93834 0.99625 0.95566 1.21462 1.01635 0.91444 1.00327 1.21489 0.91680 1.00194 0.97027 1.19735 0.94911 0.91839 1.09056 1.18495 0.83702 0.83793 0.77519 1.90666 1.27183 1.83751 1.44856 1.50084 1.33481 1.10034 1.42928 1.23275 1.00412 0.81237 0.96006 1.21865 0.96224 0.95906 0.93461 1.23560 0.91048 0.97130 0.88358 1.21553 0.97353 0.97073 0.97249 1.20963 0.92424 0.87301 0.97388 1.44188 1.42705 1.29044 1.17049 1.19396 1.44659 0.89004 0.86835 0.92157 1.25911 1.01006 0.97346 0.99634 1.70167 1.54031 1.06259 1.27235 0.85386 0.78482 0.76925 0.79881 1.20391 1.22080 1.19993 1.20433 0.90052 0.94499 0.89560 1.21835 0.97442 0.94196 1.01501 0.91593 0.89497 0.91089 0.83328 0.82407 0.82539 0.84558 0.88686 0.92535 0.88600 0.86617 0.92297 0.91051 0.97855 0.93217 0.94061 0.93421 0.98612 0.89941 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.48 71.23 0.68 -2.53 16 2 C -0.05 -1.20 5.91 -19.61 -0.12 -1.31 16 3 C -0.13 -2.12 9.67 22.23 0.21 -1.91 16 4 C -0.09 -1.12 10.04 22.33 0.22 -0.90 16 5 C -0.13 -1.75 10.03 22.23 0.22 -1.53 16 6 C -0.09 -1.58 8.91 22.53 0.20 -1.38 16 7 C -0.15 -3.82 5.67 -20.09 -0.11 -3.93 16 8 C 0.57 17.99 7.33 86.79 0.64 18.63 16 9 O -0.58 -22.74 15.01 -3.86 -0.06 -22.80 16 10 N -0.63 -17.81 3.41 -846.00 -2.88 -20.69 16 11 C 0.11 3.51 7.63 86.32 0.66 4.17 16 12 C -0.07 -2.14 0.77 -52.03 -0.04 -2.18 16 13 C 0.12 2.60 6.07 86.31 0.52 3.13 16 14 C -0.09 -3.06 5.22 30.60 0.16 -2.90 16 15 C 0.14 6.11 6.38 86.42 0.55 6.66 16 16 N -0.61 -29.89 2.94 -699.69 -2.05 -31.94 16 17 C -0.27 -14.63 9.51 84.03 0.80 -13.83 16 18 H 0.06 3.23 7.87 -2.91 -0.02 3.20 16 19 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16 20 N -0.93 -54.70 11.48 21.65 0.25 -54.45 16 21 Si 0.97 44.25 29.58 68.60 2.03 46.28 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 C 0.18 8.19 5.16 86.26 0.45 8.64 16 26 C -0.11 -3.55 5.24 30.44 0.16 -3.40 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.55 8.05 -2.38 -0.02 1.54 16 29 H 0.07 2.15 5.40 -2.39 -0.01 2.14 16 30 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 31 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 32 H 0.16 1.14 8.06 -2.92 -0.02 1.12 16 33 H 0.14 2.13 6.86 -2.91 -0.02 2.11 16 34 H 0.10 2.73 8.07 -2.39 -0.02 2.71 16 35 H 0.06 2.05 7.41 -2.39 -0.02 2.04 16 36 H 0.10 1.84 8.09 -2.39 -0.02 1.82 16 37 H 0.12 1.85 7.88 -2.39 -0.02 1.83 16 38 H 0.06 1.86 8.01 -2.39 -0.02 1.84 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.00 0.16 7.49 -2.39 -0.02 0.14 16 41 H 0.05 2.10 7.92 -2.39 -0.02 2.08 16 42 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.05 2.47 6.33 -2.38 -0.02 2.45 16 44 H 0.00 -0.21 8.07 -2.39 -0.02 -0.23 16 45 H 0.08 2.20 8.12 -2.38 -0.02 2.18 16 46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -71.09 364.17 3.86 -67.23 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.96 Total: 12.90 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 5.62 Total: 3.48 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -4.69 Total: -107.09 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.06 Total: -22.80 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -71.09 3.86 -67.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050414631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.004 kcal (2) G-P(sol) polarization free energy of solvation -71.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds